Query         gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 281
No_of_seqs    216 out of 3631
Neff          7.0 
Searched_HMMs 39220
Date          Sun May 29 15:29:41 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780341.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK10952 glycine betaine trans 100.0       0       0  515.6  28.8  279    1-280    54-332 (354)
  2 COG4176 ProW ABC-type proline/ 100.0       0       0  510.1  22.1  275    5-280     7-281 (290)
  3 TIGR03416 ABC_choXWV_perm chol 100.0       0       0  484.6  28.1  267    6-272     1-267 (267)
  4 COG0600 TauC ABC-type nitrate/ 100.0 1.4E-45       0  293.1  23.3  192   88-279    58-250 (258)
  5 PRK11365 ssuC alkanesulfonate  100.0 1.4E-45       0  292.8  23.6  196   84-279    53-249 (263)
  6 PRK10160 taurine transporter s 100.0 2.8E-45       0  291.5  20.0  194   86-279    73-267 (275)
  7 COG1174 OpuBB ABC-type proline 100.0   1E-42       0  275.5  18.4  195   86-280    21-215 (221)
  8 PRK10782 DL-methionine transpo 100.0   1E-31 2.6E-36  209.4  19.6  189   90-278    10-213 (217)
  9 COG2011 AbcD ABC-type metal io 100.0 8.8E-29 2.3E-33  191.7  15.9  192   87-278    12-222 (222)
 10 TIGR01183 ntrB nitrate ABC tra  99.9 8.4E-27 2.1E-31  179.8  14.7  188   87-274    13-202 (203)
 11 pfam00528 BPD_transp_1 Binding  99.9 4.6E-26 1.2E-30  175.4  16.1  170  111-280     1-182 (183)
 12 COG3639 ABC-type phosphate/pho  99.9 6.9E-23 1.8E-27  156.3  17.1  194   86-279    84-281 (283)
 13 PRK10971 sulfate/thiosulfate t  99.9 2.5E-21 6.3E-26  146.9  18.8  197   84-280    51-275 (277)
 14 TIGR03226 PhnU 2-aminoethylpho  99.9 1.1E-20 2.7E-25  143.1  20.9  198   83-280    84-309 (312)
 15 PRK11602 cysW sulfate/thiosulf  99.9 1.5E-20 3.8E-25  142.2  19.7  177   83-259    56-256 (291)
 16 PRK11268 pstA phosphate transp  99.9 3.5E-20 8.9E-25  140.0  21.2  194   85-278    75-292 (292)
 17 PRK11275 pstC phosphate transp  99.9 5.4E-20 1.4E-24  138.8  21.9  195   86-280    68-313 (319)
 18 COG0573 PstC ABC-type phosphat  99.9 4.6E-20 1.2E-24  139.3  21.3  195   86-280    74-307 (310)
 19 COG0581 PstA ABC-type phosphat  99.9 8.4E-20 2.1E-24  137.7  22.1  139   87-225    67-214 (292)
 20 PRK09421 modB molybdate ABC tr  99.9 2.2E-20 5.5E-25  141.2  19.0  166   85-250     3-193 (229)
 21 PRK09500 potC spermidine/putre  99.9 3.1E-20   8E-25  140.3  18.3  197   84-280    51-256 (257)
 22 COG1177 PotC ABC-type spermidi  99.9 4.8E-20 1.2E-24  139.1  18.0  194   85-278    59-265 (267)
 23 PRK09497 potB spermidine/putre  99.9 5.1E-20 1.3E-24  139.0  17.2  196   86-281    58-284 (285)
 24 PRK10683 putrescine transporte  99.9 1.2E-19   3E-24  136.8  17.9  196   84-279    90-312 (317)
 25 cd06261 TM_PBP2 Transmembrane   99.9   1E-19 2.6E-24  137.2  17.2  160   94-253     2-177 (190)
 26 PRK10592 putrescine transporte  99.9 1.1E-19 2.9E-24  136.9  17.3  196   84-279    56-271 (281)
 27 COG4149 ModC ABC-type molybdat  99.8 7.9E-20   2E-24  137.8  14.0  189   87-280     3-221 (225)
 28 TIGR02138 phosphate_pstC phosp  99.8 2.8E-19 7.1E-24  134.6  15.9  188   93-280    73-317 (317)
 29 TIGR03255 PhnV 2-aminoethylpho  99.8 3.1E-18 7.8E-23  128.3  20.3  193   87-279    64-270 (272)
 30 TIGR00974 3a0107s02c phosphate  99.8 5.4E-20 1.4E-24  138.8  10.9  194   87-280    57-301 (302)
 31 TIGR03262 PhnU2 putative 2-ami  99.8 7.1E-18 1.8E-22  126.1  19.9  194   87-280   328-541 (546)
 32 COG1178 ThiP ABC-type Fe3+ tra  99.8 3.1E-17 7.8E-22  122.3  22.5  179   84-263    49-249 (540)
 33 PRK09433 thiP thiamine transpo  99.8 3.6E-17 9.3E-22  121.8  20.7  181   88-268   326-521 (536)
 34 COG1176 PotB ABC-type spermidi  99.8 3.8E-17 9.7E-22  121.7  20.3  168   88-259    63-261 (287)
 35 PRK09494 glnP glutamine ABC tr  99.8 1.4E-17 3.5E-22  124.3  18.0  193   89-281    15-218 (219)
 36 TIGR02141 modB_ABC molybdate A  99.8 1.1E-17 2.9E-22  124.9  16.8  179   95-278     2-212 (212)
 37 TIGR01097 3A0109s02M phosphona  99.8 5.3E-18 1.3E-22  126.9  13.3  187   90-276     2-192 (192)
 38 CHL00187 cysT sulfate transpor  99.8 3.2E-17 8.2E-22  122.2  16.4  154   83-236    45-216 (235)
 39 TIGR03262 PhnU2 putative 2-ami  99.8 2.6E-16 6.7E-21  116.7  19.5  190   83-272    46-256 (546)
 40 PRK10352 nickel transporter pe  99.8 1.2E-16 3.1E-21  118.7  16.0  193   89-281    94-308 (314)
 41 COG0555 CysU ABC-type sulfate   99.8 1.3E-16 3.4E-21  118.4  16.1  189   85-278    51-271 (274)
 42 PRK09471 oppB oligopeptide tra  99.7 1.5E-16 3.8E-21  118.2  16.0  191   90-280    91-305 (306)
 43 COG1173 DppC ABC-type dipeptid  99.7 4.5E-16 1.1E-20  115.3  18.0  188   93-280    85-287 (289)
 44 COG4986 ABC-type anion transpo  99.7 5.5E-17 1.4E-21  120.8  13.2  187   94-280   320-522 (523)
 45 PRK11123 arginine transporter   99.7 8.3E-16 2.1E-20  113.7  18.7  187   91-279     9-230 (238)
 46 PRK11122 artM arginine transpo  99.7 7.9E-16   2E-20  113.8  18.6  185   91-280    10-216 (222)
 47 PRK10914 dipeptide transporter  99.7   5E-16 1.3E-20  115.0  17.0  190   92-281    95-337 (339)
 48 COG0601 DppB ABC-type dipeptid  99.7 8.9E-16 2.3E-20  113.5  17.4  193   89-281    91-315 (317)
 49 COG4986 ABC-type anion transpo  99.7 1.4E-17 3.7E-22  124.2   8.2  175   92-270    10-204 (523)
 50 COG1178 ThiP ABC-type Fe3+ tra  99.7 9.2E-16 2.3E-20  113.4  17.5  187   88-274   330-534 (540)
 51 COG0765 HisM ABC-type amino ac  99.7 1.3E-15 3.3E-20  112.5  18.2  193   88-280    17-219 (222)
 52 PRK09881 ATP-dependent peptide  99.7 1.1E-15 2.8E-20  113.0  17.7  188   93-280    93-294 (296)
 53 TIGR00969 3a0106s02 sulfate AB  99.7 3.1E-18 7.8E-23  128.3   4.2  184   95-278    73-280 (280)
 54 TIGR01581 Mo_ABC_porter NifC-l  99.7 5.4E-16 1.4E-20  114.7  15.5  175   91-265    21-220 (226)
 55 PRK10913 dipeptide transporter  99.7 1.8E-15 4.7E-20  111.6  17.8  188   93-280    98-299 (300)
 56 PRK09433 thiP thiamine transpo  99.7 8.2E-15 2.1E-19  107.7  20.4  192   85-278    48-267 (536)
 57 PRK10417 nikC nickel transport  99.7   5E-15 1.3E-19  108.9  18.3  189   92-280    65-267 (272)
 58 PRK10561 glycerol-3-phosphate   99.7 9.1E-15 2.3E-19  107.4  18.4  196   84-279    48-276 (280)
 59 PRK10998 malG maltose transpor  99.6   1E-13 2.7E-18  101.0  17.8  182   89-270    81-283 (296)
 60 TIGR02139 permease_CysT sulfat  99.6 3.7E-16 9.3E-21  115.8   4.5  179   95-278    54-264 (265)
 61 PRK10973 glycerol-3-phosphate   99.6 1.4E-13 3.7E-18  100.2  15.3  175   87-262    71-258 (281)
 62 COG0395 UgpE ABC-type sugar tr  99.6 3.9E-13 9.9E-18   97.6  17.3  184   88-271    70-270 (281)
 63 COG1175 UgpA ABC-type sugar tr  99.6 1.7E-12 4.5E-17   93.6  18.3  195   84-278    61-293 (295)
 64 TIGR02790 nickel_nikC nickel A  99.5   2E-12   5E-17   93.3  15.5  173   93-269    61-247 (258)
 65 TIGR03004 ectoine_ehuC ectoine  99.4 1.1E-11 2.8E-16   88.9  14.4  192   89-280     7-209 (216)
 66 COG4215 ArtQ ABC-type arginine  99.4 8.8E-12 2.2E-16   89.4  13.8  189   87-280     4-224 (230)
 67 PRK10999 malF maltose transpor  99.4 9.2E-11 2.4E-15   83.3  16.8  149   89-237   283-457 (520)
 68 COG4662 TupA ABC-type tungstat  99.3 1.9E-10 4.8E-15   81.4  16.5  200   78-278    10-227 (227)
 69 COG4168 SapB ABC-type antimicr  99.2 1.4E-11 3.5E-16   88.3   6.4  178   95-275    76-305 (321)
 70 COG3833 MalG ABC-type maltose   99.2 3.9E-09 9.8E-14   73.5  18.1  182   87-270    69-269 (282)
 71 TIGR02789 nickel_nikB nickel A  99.2   5E-11 1.3E-15   84.9   8.3  209   72-280    73-308 (315)
 72 COG4160 ArtM ABC-type arginine  99.2 8.7E-11 2.2E-15   83.4   8.7  183   93-279    17-222 (228)
 73 COG4208 CysW ABC-type sulfate   99.1 3.6E-10 9.1E-15   79.7   8.9  197   82-278    56-276 (287)
 74 TIGR03003 ectoine_ehuD ectoine  99.1 2.7E-09 6.9E-14   74.4  12.6  184   91-279    21-218 (218)
 75 TIGR02140 permease_CysW sulfat  99.1 6.8E-10 1.7E-14   78.1   9.4  197   84-280    40-274 (275)
 76 COG4171 SapC ABC-type antimicr  98.9 2.7E-08 6.9E-13   68.4  12.0  184   95-278    97-294 (296)
 77 COG4209 LplB ABC-type polysacc  98.9 1.9E-08 4.9E-13   69.3   9.9  188   84-279    72-303 (309)
 78 COG4239 ABC-type uncharacteriz  98.9 3.2E-07 8.1E-12   62.0  16.1  174  104-279   151-339 (341)
 79 COG4590 ABC-type uncharacteriz  98.8 2.2E-09 5.7E-14   75.0   2.9  110  167-280   596-727 (733)
 80 COG4132 ABC-type uncharacteriz  98.5 6.5E-05 1.7E-09   48.1  19.5  189   91-279    56-277 (282)
 81 COG4174 ABC-type uncharacteriz  98.5 2.4E-07 6.1E-12   62.7   6.5  182   97-278   136-357 (364)
 82 COG4135 ABC-type uncharacteriz  98.4 3.6E-05 9.2E-10   49.6  15.0  141  103-245   360-505 (551)
 83 TIGR01253 thiP thiamine/thiami  98.0 0.00087 2.2E-08   41.3  16.2  188   89-277    45-263 (519)
 84 COG4597 BatB ABC-type amino ac  98.0 2.6E-05 6.5E-10   50.5   6.9  121  157-280   268-393 (397)
 85 TIGR01253 thiP thiamine/thiami  97.9 0.00059 1.5E-08   42.3  12.2  186   84-269   316-517 (519)
 86 TIGR01726 HEQRo_perm_3TM amino  96.2    0.02 5.2E-07   33.1   6.6   80   88-167     4-90  (99)
 87 PRK13875 conjugal transfer pro  70.4     6.9 0.00018   17.8   9.9   92   27-119   120-219 (443)
 88 pfam10767 DUF2593 Protein of u  60.9      11 0.00027   16.7   7.2   13   52-64      4-16  (144)
 89 TIGR01495 ETRAMP early transcr  57.6       8  0.0002   17.4   2.3   25  220-244    65-91  (99)
 90 COG2177 FtsX Cell division pro  53.5      14 0.00036   16.0  13.7   57  161-225   175-231 (297)
 91 TIGR00840 b_cpa1 sodium/hydrog  42.6      21 0.00054   14.9   4.2   37   99-135   213-254 (627)
 92 COG0390 ABC-type uncharacteriz  37.1      26 0.00066   14.4   7.2   48  172-219   143-190 (256)
 93 PRK11026 ftsX cell division pr  36.7      26 0.00066   14.4  11.4   51  162-216   188-238 (309)
 94 pfam02954 HTH_8 Bacterial regu  33.9      29 0.00074   14.1   2.2   31  174-204    10-40  (42)
 95 PRK10132 hypothetical protein;  33.6      24 0.00062   14.6   1.6   19  103-121    89-107 (108)
 96 TIGR02230 ATPase_gene1 F0F1-AT  33.5      27 0.00068   14.3   1.8   40   70-109    49-90  (100)
 97 TIGR01948 rnfE electron transp  32.3      31 0.00078   13.9   4.2   31  208-238   120-153 (204)
 98 pfam06553 BNIP3 BNIP3. This fa  28.9      35  0.0009   13.6   2.0   28   95-122   162-189 (197)
 99 PRK12405 electron transport co  27.8      37 0.00094   13.5   5.2   31  208-238   124-157 (224)
100 pfam03649 UPF0014 Uncharacteri  27.8      37 0.00094   13.5   6.9   47  171-218   145-191 (250)
101 TIGR01939 nqrD NADH:ubiquinone  25.8      40   0.001   13.2   2.8   60  209-268   127-199 (211)
102 PRK06558 V-type ATP synthase s  25.3      41   0.001   13.2   7.5   20  193-212    43-62  (155)
103 PRK09699 D-allose transporter   25.1      41  0.0011   13.2  17.0  268    5-274    12-325 (325)
104 COG3763 Uncharacterized protei  24.6      42  0.0011   13.1   2.4   24   97-120     3-26  (71)
105 TIGR01666 YCCS hypothetical me  24.5      42  0.0011   13.1   4.1   46   72-117   392-454 (713)
106 TIGR01817 nifA Nif-specific re  22.8      41   0.001   13.2   1.2   20  185-204   546-565 (574)
107 pfam06295 DUF1043 Protein of u  22.7      40   0.001   13.2   1.1   15  106-120     4-18  (128)
108 pfam05957 DUF883 Bacterial pro  21.2      49  0.0013   12.7   1.8   18  103-120    76-93  (94)
109 COG4575 ElaB Uncharacterized c  20.9      50  0.0013   12.6   1.8   17  104-120    87-103 (104)
110 PRK11677 cytochrome d ubiquino  20.5      49  0.0013   12.7   1.2   15  106-120     8-22  (134)

No 1  
>PRK10952 glycine betaine transporter membrane protein; Provisional
Probab=100.00  E-value=0  Score=515.62  Aligned_cols=279  Identities=39%  Similarity=0.622  Sum_probs=276.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             98200066777999999999999645999999999999999999999720776899999999999984113302888877
Q gi|254780341|r    1 MSPIIQAPIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMG   80 (281)
Q Consensus         1 ~~~~~~~~ip~~~~i~~~~~wl~~~~~~~~~~i~~~l~~~l~~~~~~l~~~p~~~~i~~v~~l~~~~~~~~~~~~~~~~~   80 (281)
                      ||||+++.||+++|+|+++||+.+|++++|+.+++++++.++.+++.++.+||++++.++++++|+.. |+|.++++..+
T Consensus        54 ~~~~~~~~iPl~~Wv~~~vdWl~~~f~p~F~~I~~~i~~~l~~~~~~L~~~P~~~~i~~~~~law~~~-g~~la~~t~~~  132 (354)
T PRK10952         54 LDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGIRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQIS-GVGMGVATLIS  132 (354)
T ss_pred             CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_conf             26564277167999999999999985999999999999999999999802988999999999999980-47999999999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf             54221348449999999999999978876667764210121123202350345442012021011000000210178899
Q gi|254780341|r   81 LLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIV  160 (281)
Q Consensus        81 ~~~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~  160 (281)
                      +.+++..|+|+++|+|++++.+++.+|+++|+|+|++++||++++++++|++|.+||+|+|+||+|++++||+|..++++
T Consensus       133 l~~I~~~G~W~~aM~TLalvlvav~~~~iiGiplGI~~ars~r~~~il~PiLD~mQT~P~FVYLiP~vmlFGiG~vpavi  212 (354)
T PRK10952        133 LIAIGAIGAWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVV  212 (354)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             99999966329999999999999999999999999999746999999999998731130799999999992797145999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             99998878999995887412998999999960788201012236886267999999999999999999999970588049
Q gi|254780341|r  161 ATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGV  240 (281)
Q Consensus       161 a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~  240 (281)
                      ++++|++||++|+|..|+|+||+|++|+++++|+|+||+++||++|.|+|.|++|+||++|++++|+++|++||++|||+
T Consensus       213 AtviyAlpP~iR~T~lGir~Vp~~viEAa~~~G~T~~Q~L~kVeLPlA~P~ImaGvNQtimlaLsMvVIAa~IGagGLG~  292 (354)
T PRK10952        213 VTIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQ  292 (354)
T ss_pred             HHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             99999735899999999960888899999984999888989833602499999999999999999999999957886618


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999997407898999999999999999999998742105
Q gi|254780341|r  241 PVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR  280 (281)
Q Consensus       241 ~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~  280 (281)
                      +++++.++.|.+++++++++|+++|+++||++|...|++|
T Consensus       293 ~Vl~gi~~~d~G~gl~aGl~IVlLAIiLDRiTqa~g~~~r  332 (354)
T PRK10952        293 MVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSR  332 (354)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999986224368999999999999999998898562000


No 2  
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=100.00  E-value=0  Score=510.09  Aligned_cols=275  Identities=49%  Similarity=0.780  Sum_probs=270.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             00667779999999999996459999999999999999999997207768999999999999841133028888775422
Q gi|254780341|r    5 IQAPIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLI   84 (281)
Q Consensus         5 ~~~~ip~~~~i~~~~~wl~~~~~~~~~~i~~~l~~~l~~~~~~l~~~p~~~~i~~v~~l~~~~~~~~~~~~~~~~~~~~i   84 (281)
                      .+.++|+++|+|+++||+.+|++++||.+++.++..+++.++.+...||+..++++++++|+.. +++.++++..++.++
T Consensus         7 ~~~~~p~~~~v~~~vdwl~~n~~~~f~~i~~~l~~~~~~~~~~L~~~pp~l~i~i~~~la~~~~-~~~~~i~t~~~l~~I   85 (290)
T COG4176           7 DDAKIPIGSWVDEAVDWLTTNFGPLFDAISNPLEFLLDGLENLLLAVPPLLLILIVALLAWFAS-GLGLAIFTLLGLLLI   85 (290)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf             2222787889999999999806689999999999999999999863589999999999999997-515999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             13484499999999999999788766677642101211232023503454420120210110000002101788999999
Q gi|254780341|r   85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIV  164 (281)
Q Consensus        85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i  164 (281)
                      ++.|+|+++|+|++++..++.+|+++|+|+||+++||++++++++|++|+|||+|+|+||+|++++||+|.+|+++++++
T Consensus        86 ~~~GlW~~tM~TLaLVl~a~~isivIGiPlGI~~ar~~~~~~i~~PiLDlMQTmP~FVYLIPav~lFGlG~VPg~iAtvI  165 (290)
T COG4176          86 GNLGLWDQTMQTLALVLTATLISIVIGIPLGIWAARSPRVYRIVRPILDLMQTMPTFVYLIPAVMLFGLGNVPGLIATVI  165 (290)
T ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf             98150899999999999999999998004899985368899999689999860542799999999907888763413656


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             88789999958874129989999999607882010122368862679999999999999999999999705880499999
Q gi|254780341|r  165 FSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLR  244 (281)
Q Consensus       165 ~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~  244 (281)
                      |+.||.+|.|..|+|+||+|++|+++++|+|+||+++||++|.|+|+|++|+||++|++++|+|+|+|+|++|||+.+.+
T Consensus       166 fA~PP~IRlT~LGIrqVp~eliEA~~AFG~t~~Q~L~kVqLPlA~PtIMaGiNQtIMlALsMVVIAsMIGa~GLG~~Vl~  245 (290)
T COG4176         166 FAMPPMIRLTNLGIRQVPAELIEAADAFGATPRQKLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIGAGGLGQEVLR  245 (290)
T ss_pred             EECCCHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             53681587763241017899999999708988889787207430778998667999999999999998757877689999


Q ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             997407898999999999999999999998742105
Q gi|254780341|r  245 ALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR  280 (281)
Q Consensus       245 a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~  280 (281)
                      +.++.|.+.++.++++||++|+++||++|...+|.|
T Consensus       246 ~i~~ldig~g~~aGlaIVilAIiLDRitq~~~~~~~  281 (290)
T COG4176         246 GIQRLDIGLGFEAGLAIVILAIILDRLTQAFGRKAK  281 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             988721377776308999999999999888454531


No 3  
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=100.00  E-value=0  Score=484.64  Aligned_cols=267  Identities=58%  Similarity=0.963  Sum_probs=263.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf             06677799999999999964599999999999999999999972077689999999999998411330288887754221
Q gi|254780341|r    6 QAPIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLII   85 (281)
Q Consensus         6 ~~~ip~~~~i~~~~~wl~~~~~~~~~~i~~~l~~~l~~~~~~l~~~p~~~~i~~v~~l~~~~~~~~~~~~~~~~~~~~i~   85 (281)
                      |+++|+++|+|+++||+++|++++||.+++.+++.++..++.++..|||..+..+..+.|+..+|||.+.++..++.+++
T Consensus         1 ~~~iP~~~wid~~vdwl~~~~~~~f~~i~~~i~~~l~~~~~~l~~~ppw~~i~~~~~l~~~~~~g~rla~~~~~~l~~i~   80 (267)
T TIGR03416         1 DHKIPIGAWAKSFVDWLTDNGAFFFDALAFVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQRSWSLALFVALGLLLII   80 (267)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             99778899999999999997799999999999999999999984276899999999999999645899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             34844999999999999997887666776421012112320235034544201202101100000021017889999998
Q gi|254780341|r   86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVF  165 (281)
Q Consensus        86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~  165 (281)
                      ..|+|+++|+|++++.+++.+|+++|+|+|++++|||++++.++|++|.+||+|+|+|++|++++||+|+.|+++++++|
T Consensus        81 ~~G~W~~am~Tlalv~~av~la~~iGiPlGI~~~~s~~~~~~l~pild~mQTiP~fvyLip~i~lfGiG~~~aiia~~iy  160 (267)
T TIGR03416        81 NQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHRPWLYAIMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLISTVIF  160 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             87158999999999999999999999999999981699999999999874315467999999999488705699999999


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             87899999588741299899999996078820101223688626799999999999999999999997058804999999
Q gi|254780341|r  166 SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRA  245 (281)
Q Consensus       166 ~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~a  245 (281)
                      +.||++|+|++|+|+||+|++|+++++|+|+||+++||++|+|+|+|++|+||+++++++|+++|+++|++|||+++.++
T Consensus       161 a~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IGa~GLG~~v~~~  240 (267)
T TIGR03416       161 AIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRA  240 (267)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             98899999999998567689999998399898897994184158999999999999999999999996788536999999


Q ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             974078989999999999999999999
Q gi|254780341|r  246 LNTVDIGRGFESGLCIVILAIILDRLF  272 (281)
Q Consensus       246 ~~~~~~~~~~~~~l~Iv~lai~lDri~  272 (281)
                      .++.|.+++++++++|+++|+++||++
T Consensus       241 l~~~~~g~~l~~gi~iv~lAiilDRlf  267 (267)
T TIGR03416       241 LNTVNIALGFEAGLAIVVLAIVLDRIF  267 (267)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             863356889999999999999997049


No 4  
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=100.00  E-value=1.4e-45  Score=293.10  Aligned_cols=192  Identities=30%  Similarity=0.440  Sum_probs=186.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             84499999999999999788766677642101211232023503454420120210110000002101788999999887
Q gi|254780341|r   88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSI  167 (281)
Q Consensus        88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~  167 (281)
                      ++|+|...|+.++..|+.++.++|+++|+++++|+..++.++|+++++|++|+++++|..++|||+|+.+++...++.++
T Consensus        58 ~L~~~~~~Sl~rv~~Gf~la~~~gi~lgil~g~~~~~~~~l~P~i~~l~~iP~lA~~Pl~ilwfG~g~~s~i~i~~~~~f  137 (258)
T COG0600          58 ELFQHLLASLLRVLLGFALAAVLGIPLGILMGLSRLLERLLDPLVQVLRPIPPLALAPLAILWFGIGETSKIVIAVLGAF  137 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             59999999999999999999999999999998579999999699999931777999999999990796119999999999


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Q ss_conf             899999588741299899999996078820101223688626799999999999999999999997058-8049999999
Q gi|254780341|r  168 PTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPVLRAL  246 (281)
Q Consensus       168 ~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-GLG~~i~~a~  246 (281)
                      +|++.||.+|+|++|++++|++|++|+|+||+++||++|+|+|+|++|+|++...++..++++|++|++ ||||++.++.
T Consensus       138 fpi~int~~Gvr~v~~~~~~~ar~lgas~~~~l~~v~lP~AlP~i~tgLRia~g~aw~~~VvaE~l~a~~GLG~~i~~a~  217 (258)
T COG0600         138 FPILINTLDGVRSVDPDLLELARTLGASRWQILRKVILPAALPYIFTGLRIAIGLAWIGLVVAELLGASSGLGYLILDAR  217 (258)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999999998718999999999809897778776205300789999999999999999999999705666879999999


Q ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             740789899999999999999999999874210
Q gi|254780341|r  247 NTVDIGRGFESGLCIVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       247 ~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~  279 (281)
                      +++|+++++++.+.+.+++.++|+..+..|||-
T Consensus       218 ~~~~~~~v~a~i~~i~~lgll~d~~v~~~er~~  250 (258)
T COG0600         218 NNLQTDLVFAAILVIALLGLLLDRLVRLLERRL  250 (258)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             851678999999999999999999999999998


No 5  
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional
Probab=100.00  E-value=1.4e-45  Score=292.75  Aligned_cols=196  Identities=17%  Similarity=0.200  Sum_probs=189.9

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             21348449999999999999978876667764210121123202350345442012021011000000210178899999
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATI  163 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~  163 (281)
                      ..+..+|+|...|+.++..|+.++.++|+++|++++++++.++.++|+++++|++|++++.|.++.|||.|+.++++.++
T Consensus        53 ~~~g~l~~~~~~Tl~r~~~Gf~l~~~~Gi~lGil~g~~~~~~~~~~P~~~~l~~iP~ia~~Pl~ilwfG~g~~~~i~~i~  132 (263)
T PRK11365         53 SASGELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVA  132 (263)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             54845999999999999999999999999999999986999987585999997657999999999997157420447886


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHH
Q ss_conf             9887899999588741299899999996078820101223688626799999999999999999999997058-804999
Q gi|254780341|r  164 VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPV  242 (281)
Q Consensus       164 i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-GLG~~i  242 (281)
                      +.++||++.||.+|+|++|++++|++|++|+|+||+++||++|+++|++++|+|++...++.+++++|++|++ |||+++
T Consensus       133 ~~~~~pi~~nt~~Gv~~v~~~~~~~ar~~g~s~~~~l~~V~lP~alP~i~~glria~~~a~~~~v~aE~i~~~~GLG~~i  212 (263)
T PRK11365        133 LGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLA  212 (263)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             51042889999888754999999999872999999999989800688999999999999999999999984469888999


Q ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999740789899999999999999999999874210
Q gi|254780341|r  243 LRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       243 ~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~  279 (281)
                      .++.+++|++.++++.+.+.++++++|++.+..|||.
T Consensus       213 ~~a~~~~~~~~v~a~ii~i~llg~~l~~~~~~lerrl  249 (263)
T PRK11365        213 MNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLW  249 (263)
T ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999870688999999999999999999999999993


No 6  
>PRK10160 taurine transporter subunit; Provisional
Probab=100.00  E-value=2.8e-45  Score=291.48  Aligned_cols=194  Identities=23%  Similarity=0.361  Sum_probs=188.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             34844999999999999997887666776421012112320235034544201202101100000021017889999998
Q gi|254780341|r   86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVF  165 (281)
Q Consensus        86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~  165 (281)
                      +..+|+|...|+.++..|+.+|.++|+++|+++++|+++++.++|+++.+|++|++++.|.+++|||+|+.++++.+++.
T Consensus        73 ~g~l~~~~~~Tl~r~~~Gf~la~~~Gv~lGil~g~~~~~~~~l~P~l~~l~~iP~ial~Pl~ilwfG~g~~~~i~vv~l~  152 (275)
T PRK10160         73 DATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLA  152 (275)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHEEEHHH
T ss_conf             75499999999999999999999999999999998799999999999999858899999999985357840061010287


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHH
Q ss_conf             87899999588741299899999996078820101223688626799999999999999999999997058-80499999
Q gi|254780341|r  166 SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPVLR  244 (281)
Q Consensus       166 ~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-GLG~~i~~  244 (281)
                      ++||+..||.+|+|++|++++|++|++|+|+||+++||++|+++|++++|+|++...++..++++|++|++ |||+++.+
T Consensus       153 ~~fpi~~nt~~Gvr~vd~~l~e~ar~~gas~~q~~~~V~lP~alP~i~~GlRi~~~~a~~~~v~aE~l~~~~GLG~~I~~  232 (275)
T PRK10160        153 IFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQS  232 (275)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             54089999999997189999999998299999999998888789999999999999999999999998347987899999


Q ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99740789899999999999999999999874210
Q gi|254780341|r  245 ALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       245 a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~  279 (281)
                      +.+++|++.++++.+.+.++++++|.+.+..|||.
T Consensus       233 a~~~~~~~~~~a~ii~i~llg~~l~~~~~~lerrl  267 (275)
T PRK10160        233 AGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRL  267 (275)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99863789999999999999999999999999891


No 7  
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
Probab=100.00  E-value=1e-42  Score=275.55  Aligned_cols=195  Identities=31%  Similarity=0.537  Sum_probs=189.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             34844999999999999997887666776421012112320235034544201202101100000021017889999998
Q gi|254780341|r   86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVF  165 (281)
Q Consensus        86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~  165 (281)
                      ...+|+.+.+++.++..+..++.++|+|+|+++.|+++.+..+..+.++.||+||++.+..++..+|+|..|++++.++|
T Consensus        21 ~~~~~~~~~~Hl~l~~~a~~~a~~igVplGIl~~r~~~~~~~v~~v~nv~qTiPslAllallipv~GiG~~PAiiAL~lY  100 (221)
T COG1174          21 QDYLLALTLQHLLLVLLAVLIAILIGVPLGILVTRSRRLAGLVLGVANVLQTIPSLALLALLIPVLGIGLTPAIIALFLY  100 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             87999999999999999999999999788999873488888999999998616089999999998568863899999999


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             87899999588741299899999996078820101223688626799999999999999999999997058804999999
Q gi|254780341|r  166 SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRA  245 (281)
Q Consensus       166 ~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~a  245 (281)
                      ++.|++|||++|+++||++++|+||.+|+|+||+++||++|.|+|.|++|+|.+..++..++.+|+++|++|||..+.++
T Consensus       101 sLLPIvrNT~~GL~~V~~~v~EAa~gmGMT~~Q~L~~VelPlAlPvIlaGIR~a~V~~ig~Atiaa~IGAGGLG~~I~~G  180 (221)
T COG1174         101 SLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLALPVILAGIRTAVVINIGTATIAALIGAGGLGDLIFRG  180 (221)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             97199999999981498778999886599878798974120018999864899999999999999998277442899820


Q ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             97407898999999999999999999998742105
Q gi|254780341|r  246 LNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR  280 (281)
Q Consensus       246 ~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~  280 (281)
                      .+.+|.+..+.+.+.+.++|++.|.+.++.||+..
T Consensus       181 l~~~n~~~il~Gai~valLAi~~d~ll~~~e~~l~  215 (221)
T COG1174         181 LNLNNTALILAGAIPVALLAILADVLLGLLERALT  215 (221)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             40166799999699999999999999999999834


No 8  
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=100.00  E-value=1e-31  Score=209.37  Aligned_cols=189  Identities=26%  Similarity=0.358  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHH------CCCCH
Q ss_conf             49999999999999978876667764210--------12112320235034544201202101100000------02101
Q gi|254780341|r   90 WQETTETLSLVLVSTFISMFIGVPLGVLA--------AWYPRFYSIIRLFLDSMQTIPTFVYLIPALVL------FGLGM  155 (281)
Q Consensus        90 W~~~~~Tl~~~~~~~~ia~~igiplGi~~--------~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~------fG~g~  155 (281)
                      ++...+|++++..++.++.++|+|+|+++        .+++++++..+++++++|++|.++++...+.+      .|.|.
T Consensus        10 l~g~~~Tl~mt~~s~~~~~iiglplGi~l~~~~~~~~~~~~~l~~~~~~~i~~~R~iP~lv~l~~~~~~~~~~~g~~~g~   89 (217)
T PRK10782         10 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSAVVNIFRSIPFIILLVWMIPFTRVIVGTSIGL   89 (217)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             99999999999999999999999999999973202244346899999999999950689999999999999984466216


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             78899999988789999958874129989999999607882010122368862679999999999999999999999705
Q gi|254780341|r  156 VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS  235 (281)
Q Consensus       156 ~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~  235 (281)
                      .+++++..+++.|++.+++++|+++||++.+|||+++|+|+||+++||.+|+|+|.++.+++......++...+++.+|+
T Consensus        90 ~aaiiaL~i~~~~~iar~~~~~i~~V~~g~~EAa~alG~s~~q~i~~viLPqAlp~ii~~~~~~~i~~i~~tsl~g~IG~  169 (217)
T PRK10782         90 QAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGA  169 (217)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             89999999999899999999999839987999999839898899485107921999999999999999999999999810


Q ss_pred             CCHHHHH-HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8804999-999974078989999999999999999999987421
Q gi|254780341|r  236 NGLGVPV-LRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPR  278 (281)
Q Consensus       236 ~GLG~~i-~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r  278 (281)
                      +|||+.. ..+.+++|.+.+....+.++++..++|-+.++.+||
T Consensus       170 ggLG~~a~~~~~~~~~~~~~~~v~~l~~ilv~~i~~~~~~l~k~  213 (217)
T PRK10782        170 GGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRA  213 (217)
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             47899999999985151099999999999999999999999998


No 9  
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.96  E-value=8.8e-29  Score=191.72  Aligned_cols=192  Identities=31%  Similarity=0.494  Sum_probs=164.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCHHHHHCCCHHHHHHHHCCCCCH---HHHH-HHHCC--
Q ss_conf             484499999999999999788766677642101--------211232023503454420120210---1100-00002--
Q gi|254780341|r   87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAA--------WYPRFYSIIRLFLDSMQTIPTFVY---LIPA-LVLFG--  152 (281)
Q Consensus        87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~--------~~~~~~~~~~p~l~~~~~iP~~v~---l~p~-i~~fG--  152 (281)
                      ..+|..+.+|++++..++.++.++|+|+|+++.        .++.+++.+..+.++++++|-+..   ++|+ ....|  
T Consensus        12 ~~l~~a~~eTlyMv~~s~~~~~~iGlplGvlL~~T~~g~i~~n~~~~~il~~ivNi~Rs~PFiILlv~liP~Tr~ivGTs   91 (222)
T COG2011          12 QLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNILRSIPFIILLVALIPLTRLIVGTS   91 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999999987663436781788613008899999999998751209999999998899997265


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10178899999988789999958874129989999999607882010122368862679999999999999999999999
Q gi|254780341|r  153 LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTAL  232 (281)
Q Consensus       153 ~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~  232 (281)
                      +|..+++....+.+.|...|.++.++|+||+.++|||+++|+|+||+.+||.+|.|+|++..|+..+...-.....-|+.
T Consensus        92 iG~~AAivPL~i~a~PF~ARlve~aL~EVd~GvIEAA~amGAs~~~II~kVlLpEa~p~li~g~Tvt~I~LIg~SAMAGa  171 (222)
T COG2011          92 IGTTAAIVPLTIGAAPFVARLVESALREVDKGVIEAAQAMGASPWQIIRKVLLPEALPGLVSGITVTLISLIGYSAMAGA  171 (222)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             25304774167888889999999999744725899999849988888787326213678998899999999808888302


Q ss_pred             HCCCCHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_conf             70588049999-999740789899999999999999----99999987421
Q gi|254780341|r  233 VGSNGLGVPVL-RALNTVDIGRGFESGLCIVILAII----LDRLFSIPDPR  278 (281)
Q Consensus       233 ig~~GLG~~i~-~a~~~~~~~~~~~~~l~Iv~lai~----lDri~~~~~~r  278 (281)
                      +|++|||..-. .++||+|.+.+..+.+.+.++--.    =|++.+..+||
T Consensus       172 IGgGGLGdlAiryGY~Rf~~~Vm~~~viillilVq~iQ~~Gd~l~~r~~kr  222 (222)
T COG2011         172 IGGGGLGDLAIRYGYQRFNTDVMVVAVVILLILVQLIQSLGDRLVRRLDKR  222 (222)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             266733699999878855883157999999999999999989999997149


No 10 
>TIGR01183 ntrB nitrate ABC transporter, permease protein; InterPro: IPR005889   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This entry comprises of the nitrate transport permease in bacteria, the gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016021 integral to membrane.
Probab=99.95  E-value=8.4e-27  Score=179.82  Aligned_cols=188  Identities=21%  Similarity=0.324  Sum_probs=179.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             48449999999999999978876667764210121123202350345442012021011000000210178899999988
Q gi|254780341|r   87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFS  166 (281)
Q Consensus        87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~  166 (281)
                      .|+.-+...++.++..|+..+.+.|+.+|+..|.++...+.++|+.+.++++|+++|+|..+.-|--.+.++++.+++.+
T Consensus        13 ~Gl~~q~~~sl~rva~G~~~aa~~Gi~~G~~~G~~~~~~~~ldP~~q~lr~~~PlaW~Pi~l~~~~~~~~~aifvifita   92 (203)
T TIGR01183        13 KGLFLQILASLTRVAVGYLLAAIVGIAVGILIGLSKLLNKALDPIFQVLRTVPPLAWLPIALAAFQDAQPAAIFVIFITA   92 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEHHHHH
T ss_conf             03799999999999999999999999999997468999874208999997515345788999998416863131124877


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHH
Q ss_conf             789999958874129989999999607882010122368862679999999999999999999999705--880499999
Q gi|254780341|r  167 IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS--NGLGVPVLR  244 (281)
Q Consensus       167 ~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~--~GLG~~i~~  244 (281)
                      .+|++.||..|++++|+|+.+.+|.+..|+.+.+.++.+|++.|++++|+|.+++++|--.+.+|++-+  .|+|+.+++
T Consensus        93 ~WPi~int~~G~~~~P~dy~nv~rvl~ls~~~y~~~~~~P~~~Py~f~Gl~i~~Gl~Wlai~aae~~~~~~~GiGffiWd  172 (203)
T TIGR01183        93 IWPIIINTAVGVQQIPQDYNNVARVLKLSKSDYLLKVLLPAAVPYIFTGLRIAIGLSWLAIVAAEMLIGGIVGIGFFIWD  172 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             98999876666763117789999999987888888777544456898658999999999999999986054301243222


Q ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             997407898999999999999999999998
Q gi|254780341|r  245 ALNTVDIGRGFESGLCIVILAIILDRLFSI  274 (281)
Q Consensus       245 a~~~~~~~~~~~~~l~Iv~lai~lDri~~~  274 (281)
                      +.+.........+.+-+.+.++.+||+..+
T Consensus       173 ay~~~~~s~~ila~~y~G~vGl~l~~~v~~  202 (203)
T TIGR01183       173 AYNSGSVSEIILAIIYVGLVGLLLDRLVAF  202 (203)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             230143047999999999999999999850


No 11 
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.94  E-value=4.6e-26  Score=175.36  Aligned_cols=170  Identities=32%  Similarity=0.508  Sum_probs=150.9

Q ss_pred             HHHHHHHCC--CCHHHHHCCCHHHHHHHHCCCCCHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             677642101--2112320235034544201202101100000-----021017889999998878999995887412998
Q gi|254780341|r  111 GVPLGVLAA--WYPRFYSIIRLFLDSMQTIPTFVYLIPALVL-----FGLGMVPGIVATIVFSIPTSVRLTRLGIISTPP  183 (281)
Q Consensus       111 giplGi~~~--~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~-----fG~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~  183 (281)
                      |+|+|++++  ++++.++.++++.++++++|++++.+.++.+     ++.+..+++.....+..+++..+..++++++|+
T Consensus         1 Gv~lG~~~a~~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~   80 (183)
T pfam00528         1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS   80 (183)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             98699999950785899999999999998349999999999984236678999999999999999999999999970689


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             99999996078820101223688626799999999999999999999997058-80499999997407898999999999
Q gi|254780341|r  184 ILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPVLRALNTVDIGRGFESGLCIV  262 (281)
Q Consensus       184 ~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-GLG~~i~~a~~~~~~~~~~~~~l~Iv  262 (281)
                      +++|+||+.|+|+||+++|+.+|+++|.+++++++++..++...+++|++++. |+|+++.++.++.|++......+.++
T Consensus        81 ~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~~GlG~~~~~a~~~~d~~~~~~~~~~~~  160 (183)
T pfam00528        81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAA  160 (183)
T ss_pred             HHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998699843412992189899999999999999999999999999368967599999999770999999999999


Q ss_pred             HHH----HHHHHHHHHHHHHCC
Q ss_conf             999----999999998742105
Q gi|254780341|r  263 ILA----IILDRLFSIPDPRDR  280 (281)
Q Consensus       263 ~la----i~lDri~~~~~~r~~  280 (281)
                      ++.    .+.|.+.+..++|.|
T Consensus       161 ~~~~~~~~~~d~l~~~ldpr~r  182 (183)
T pfam00528       161 LILLLLNLLVDILQRLLDPRVR  182 (183)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999999999999987391017


No 12 
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.91  E-value=6.9e-23  Score=156.25  Aligned_cols=194  Identities=23%  Similarity=0.305  Sum_probs=179.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf             348449999999999999978876667764210121----1232023503454420120210110000002101788999
Q gi|254780341|r   86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY----PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVA  161 (281)
Q Consensus        86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~----~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a  161 (281)
                      ..+.|...++|+.+...|++++.++++|++++++++    ++.+..++-++++.+++|.+++..+.+..||.|..+++.|
T Consensus        84 ~~~~~~~ll~Tl~ma~~gT~l~~i~aipl~flaa~n~~~~~~~~~~~r~ll~~iR~iP~iv~a~ifv~~~g~G~~agilA  163 (283)
T COG3639          84 LPDILTALLQTLAIAFAGTLLAAILAIPLAFLAARNLSPKRWISFPVRRLLDFIRTIPELVWALLFVAAFGLGPFAGVLA  163 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             31579999999999999999999999999999731258641289999999999976429999999999857854778999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             99988789999958874129989999999607882010122368862679999999999999999999999705880499
Q gi|254780341|r  162 TIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVP  241 (281)
Q Consensus       162 ~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~  241 (281)
                      +.+++.-.+.....+.++++|++..|+.++.|+|+.|.++.=.+|+.+|...+=..-..-......++-+++|++|+|+.
T Consensus       164 l~i~t~g~LgKl~~e~iE~id~~p~e~l~a~Gas~~~~~~~~vlPqv~p~f~s~~lyrfE~n~R~a~VlG~vGaGGIG~~  243 (283)
T COG3639         164 LGIYTIGILGKLYAEALESIDTGPGEALRATGASRLQLILFGVLPQIKPNFISYSLYRFESNIRAAAVLGLVGAGGIGQR  243 (283)
T ss_pred             HHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             99980219999999999845776789999836861453311200124188999999999987578899873255427799


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999740789899999999999999999999874210
Q gi|254780341|r  242 VLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       242 i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~  279 (281)
                      +..+.+..|++.+.+-.+.+.+.-+++|-+.++.+||.
T Consensus       244 L~~~~~~~~~d~v~~i~l~i~v~V~~id~iS~~iR~r~  281 (283)
T COG3639         244 LMNSISLFQWDKVATIILPILVLVILIDLISAKIRKRL  281 (283)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99887440475769999999999999999999999985


No 13 
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.89  E-value=2.5e-21  Score=146.90  Aligned_cols=197  Identities=22%  Similarity=0.218  Sum_probs=157.7

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC---------
Q ss_conf             213484499999999999999788766677642101211-2320235034544201202101100000021---------
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL---------  153 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~---------  153 (281)
                      ..+..+|+...+|+.....++.++.++|+|+++.+.|++ +.++.++.++.....+|+++.......+||.         
T Consensus        51 f~dp~~~~al~nTl~ia~~~t~i~~vlG~~~A~~l~r~~f~gr~~l~~l~~lP~~iP~~V~g~~~~~lf~~~G~~~~~l~  130 (277)
T PRK10971         51 ITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLA  130 (277)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             87988999999999999999999999999999999915887389999999999998999999999998466542667899


Q ss_pred             --------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --------017889999998878999995887412998999999960788201012236886267999999999999999
Q gi|254780341|r  154 --------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS  225 (281)
Q Consensus       154 --------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~  225 (281)
                              +..+.+++.....+|.+++....+++++|+++.|||+++|||+||+++||.+|...|++.+|.-.+...++.
T Consensus       131 ~~gi~~~~~~~giii~~~~~~~Pf~~~~~~a~l~~id~~leEAA~~lGAs~~~~f~~V~lPll~P~i~~g~ll~F~~s~~  210 (277)
T PRK10971        131 KFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLG  210 (277)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             75964101299999999999989999987899984899999999864998657304103985799999999999999998


Q ss_pred             HHHHHHHHCCC------CHHHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCC
Q ss_conf             99999997058------80499999997407898999999999999----999999998742105
Q gi|254780341|r  226 MVVVTALVGSN------GLGVPVLRALNTVDIGRGFESGLCIVILA----IILDRLFSIPDPRDR  280 (281)
Q Consensus       226 ~vvia~~ig~~------GLG~~i~~a~~~~~~~~~~~~~l~Iv~la----i~lDri~~~~~~r~~  280 (281)
                      ...+.-++|++      -+...++...++.|.+.+.+......++.    ....++.++.+||..
T Consensus       211 ~f~~~~~l~G~~~~~t~tl~~~iy~~~~~~d~~~a~Als~ill~~sli~~~~~~~l~~R~~Rr~~  275 (277)
T PRK10971        211 EFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVV  275 (277)
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             76067500179988651499999999987688999999999999999999999999999987537


No 14 
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=99.89  E-value=1.1e-20  Score=143.09  Aligned_cols=198  Identities=21%  Similarity=0.339  Sum_probs=156.2

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHC----------
Q ss_conf             2213484499999999999999788766677642101211-23202350345442012021011000000----------
Q gi|254780341|r   83 LIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLF----------  151 (281)
Q Consensus        83 ~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~f----------  151 (281)
                      ...+.++|+...+|+.....++.+++++|++++.++.|.+ +.++.++.++.....+|+++.......+|          
T Consensus        84 ~f~~~~~~~al~nTl~~a~~~t~~~lvlG~~lA~~L~r~~f~g~~~l~~ll~lp~~lP~~v~a~a~~~l~~~~G~ln~~L  163 (312)
T TIGR03226        84 FFASHDFRDALGNTLQIAFAAAAGALLLGSALAAILFFIPFPGAELIGRFLDLFIAFPSFLIAFAFIFIYGSAGLLNGAL  163 (312)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             97796799999999999999999999999999999996237628999999999999889999999999983577077999


Q ss_pred             ----CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ----21---------01788999999887899999588741299899999996078820101223688626799999999
Q gi|254780341|r  152 ----GL---------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQ  218 (281)
Q Consensus       152 ----G~---------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~  218 (281)
                          |+         +..+.+++.+.+.+|.+++....+++++|+++.|||+++|||+||+++||.+|..+|++++|.-.
T Consensus       164 ~~l~gl~~~p~~~l~s~~gVvla~i~~~~Pf~~l~~~a~l~~id~~l~EAA~~lGAs~~~~Fr~VtLPll~P~i~ag~lL  243 (312)
T TIGR03226       164 MRAFAFDAPPLDFLFGAGGVILAEITFFTPFVMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGIL  243 (312)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99628667745777409999999999989999999999999689789999988499988867874278468999999999


Q ss_pred             HHHHHHHHHHHHHHHCCC---CHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999997058---80499999-997407898999999999999999999998742105
Q gi|254780341|r  219 TIMLSLSMVVVTALVGSN---GLGVPVLR-ALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR  280 (281)
Q Consensus       219 ~~~~~l~~vvia~~ig~~---GLG~~i~~-a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~  280 (281)
                      +.+.++..-.+..++|++   =++..+++ ..+..|++.+-+..+...++.+.+-.+.++.+||..
T Consensus       244 ~Fi~~~~~F~~~~~lgg~~~~tl~~~Iy~~~~~~~d~~~AaAlavillv~~l~l~~l~r~~~rR~~  309 (312)
T TIGR03226       244 CFLLTLNEFGILLFIGAAGLITLPMAIYSKAILDIDLPAAAAGALIMIALSLALFALYRLAARRAG  309 (312)
T ss_pred             HHHHHHHHHCCEEEEECCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999775411344089970179999999987579899999999999999999999999987634


No 15 
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional
Probab=99.88  E-value=1.5e-20  Score=142.18  Aligned_cols=177  Identities=18%  Similarity=0.195  Sum_probs=137.4

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC--------
Q ss_conf             2213484499999999999999788766677642101211-2320235034544201202101100000021--------
Q gi|254780341|r   83 LIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL--------  153 (281)
Q Consensus        83 ~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~--------  153 (281)
                      ...+.++|+...+|+.....++.+++++|++++.++.|.+ +.++.++.++.+-..+|+.+.......+||.        
T Consensus        56 ~l~dp~~~~al~~Tl~~a~~~~~i~lvlG~~lA~~l~r~~f~gr~~~~~l~~lP~~ip~vV~g~~~~~l~~~~G~l~~~L  135 (291)
T PRK11602         56 NLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWL  135 (291)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             98397899999999999999999999999999999992788608999999999886379999999999826443789999


Q ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---------01788999999887899999588741299899999996078820101223688626799999999999999
Q gi|254780341|r  154 ---------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSL  224 (281)
Q Consensus       154 ---------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l  224 (281)
                               +..+.+++.+....|.+.+....+++++|+++.|||+++|+|+||+++||.+|...|.+++|.-.+.+.++
T Consensus       136 ~~~~~~~~~s~~giil~~v~~~~Pf~~~~~~a~l~~i~~~l~EAA~~lGAs~wq~F~~VtLPll~P~i~~g~iL~f~~al  215 (291)
T PRK11602        136 DEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAI  215 (291)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             85583286778999999999999999999999998689589999987699987898986498309999999999999998


Q ss_pred             HHHHHHHHHCCC------CHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf             999999997058------80499999997407898999999
Q gi|254780341|r  225 SMVVVTALVGSN------GLGVPVLRALNTVDIGRGFESGL  259 (281)
Q Consensus       225 ~~vvia~~ig~~------GLG~~i~~a~~~~~~~~~~~~~l  259 (281)
                      ..--...+++++      -+-..++...+..|......+..
T Consensus       216 ~~Fg~v~~l~G~~~g~T~t~~~~i~~~~~~~~~~~a~~~a~  256 (291)
T PRK11602        216 GEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAA  256 (291)
T ss_pred             HHCCCHHEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             75680431157998850106999999998126446999999


No 16 
>PRK11268 pstA phosphate transporter permease subunit; Provisional
Probab=99.88  E-value=3.5e-20  Score=139.97  Aligned_cols=194  Identities=18%  Similarity=0.242  Sum_probs=143.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHCCCHHHHHHHHCCCCCHHHHHHH-----HCCCCHH
Q ss_conf             1348449999999999999978876667764210121---1232023503454420120210110000-----0021017
Q gi|254780341|r   85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY---PRFYSIIRLFLDSMQTIPTFVYLIPALV-----LFGLGMV  156 (281)
Q Consensus        85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~---~~~~~~~~p~l~~~~~iP~~v~l~p~i~-----~fG~g~~  156 (281)
                      ...|.++....|+..+..+.++++.+|+..|+++.++   ++..+.++...|.+..+||++|-.....     +-+++..
T Consensus        75 ~~gGi~~aivGTl~~~~~a~lia~Pigi~~aIyL~Eya~~~~~~~~ir~~i~~LagiPSIV~Glfg~~~~v~~~~~~s~l  154 (292)
T PRK11268         75 EGGGLANAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQMEHFSGW  154 (292)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88766999999999999999999999999999999976864399999999999842748999999999999852125578


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
Q ss_conf             889999998878999995887412998999999960788201012236886267999999999999999999999970--
Q gi|254780341|r  157 PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVG--  234 (281)
Q Consensus       157 ~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig--  234 (281)
                      ++.++..+..+|.+++.|++++|+||++++|++.++|+||||..+||.+|+|+|+|++|+-.++.-+..-...--+.+  
T Consensus       155 ag~l~LaimilP~i~~~teeaL~~VP~~lreaa~ALGatkw~ti~~VvlP~A~~GI~tgviLaiaRa~GETApll~ta~~  234 (292)
T PRK11268        155 AGVIALALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFTALS  234 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999999999599889999998799865762237607637799999999999999879999999833


Q ss_pred             -----------CCCHHHHHHHHHHH-HCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----------58804999999974-078--989999999999999999999987421
Q gi|254780341|r  235 -----------SNGLGVPVLRALNT-VDI--GRGFESGLCIVILAIILDRLFSIPDPR  278 (281)
Q Consensus       235 -----------~~GLG~~i~~a~~~-~~~--~~~~~~~l~Iv~lai~lDri~~~~~~r  278 (281)
                                 ..-|-..+++-.+. .+.  ..+.++.+...++-+.+.-+.+...||
T Consensus       235 ~~~~~~~l~~p~~tLp~~Iy~~a~~p~~~~~~la~a~alvL~~~vL~lNi~ar~i~rr  292 (292)
T PRK11268        235 NQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLLITLCVLLLNILARVVFAK  292 (292)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             2347899787301548999998049647799999999999999999999999998559


No 17 
>PRK11275 pstC phosphate transporter permease subunit; Provisional
Probab=99.88  E-value=5.4e-20  Score=138.83  Aligned_cols=195  Identities=17%  Similarity=0.286  Sum_probs=144.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCHH-------HHHHH-------
Q ss_conf             34844999999999999997887666776421012--112320235034544201202101-------10000-------
Q gi|254780341|r   86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVYL-------IPALV-------  149 (281)
Q Consensus        86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~l-------~p~i~-------  149 (281)
                      ..|.++....|+.....+.+++..+|+..++++.+  .++.++.+++.+|.+..+|+.+|-       .|...       
T Consensus        68 ~~Gi~~~i~GTl~~s~iAllia~Plgi~~Aiyl~eya~~~~~~~l~~~ielLagIPSVV~Gl~Gl~v~~p~~~~~~~~~~  147 (319)
T PRK11275         68 IYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPV  147 (319)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77829999999999999999999999999999999766858989999999982175899999999999999998754556


Q ss_pred             -----------------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             -----------------002101788999999887899999588741299899999996078820101223688626799
Q gi|254780341|r  150 -----------------LFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQI  212 (281)
Q Consensus       150 -----------------~fG~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i  212 (281)
                                       -+|.+..++.++..++.+|.+++.+++++++||++++|++.++|+||||+.+||.+|+|.|+|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~G~s~l~a~i~LaiMilP~i~s~s~eal~~VP~~~reaa~ALGatrw~ti~~VvlP~a~~GI  227 (319)
T PRK11275        148 GNILSNIPIVGALFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGV  227 (319)
T ss_pred             HHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             54412104677761477644028999999999999999999999999688999999998399799999999999888689


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HCCC-C------------HHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999-7058-8------------049999999740----7898999999999999999999998
Q gi|254780341|r  213 VASLTQTIMLSLSMVVVTAL-VGSN-G------------LGVPVLRALNTV----DIGRGFESGLCIVILAIILDRLFSI  274 (281)
Q Consensus       213 ~~Gi~~~~~~~l~~vvia~~-ig~~-G------------LG~~i~~a~~~~----~~~~~~~~~l~Iv~lai~lDri~~~  274 (281)
                      ++|+=.++.-++.-...--| +|.. .            +-..+.......    ++...+++++...++..++.-+.+.
T Consensus       228 ~~gviLg~gRAlGETmaV~mv~Gn~~~~~~~~lf~p~~Tlts~Ia~~~~ea~~g~~~~al~a~glvLfvit~i~N~~a~~  307 (319)
T PRK11275        228 IGGVMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKL  307 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999988999999927876689876456550899999996313577489999999999999999999999999


Q ss_pred             HHHHCC
Q ss_conf             742105
Q gi|254780341|r  275 PDPRDR  280 (281)
Q Consensus       275 ~~~r~~  280 (281)
                      .-+|.|
T Consensus       308 iv~R~~  313 (319)
T PRK11275        308 MIMRLA  313 (319)
T ss_pred             HHHHHH
T ss_conf             999987


No 18 
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.88  E-value=4.6e-20  Score=139.26  Aligned_cols=195  Identities=25%  Similarity=0.405  Sum_probs=150.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CH-HHHHCCCHHHHHHHHCCCCCH-------HHHHHHH-C---
Q ss_conf             34844999999999999997887666776421012--11-232023503454420120210-------1100000-0---
Q gi|254780341|r   86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW--YP-RFYSIIRLFLDSMQTIPTFVY-------LIPALVL-F---  151 (281)
Q Consensus        86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~-~~~~~~~p~l~~~~~iP~~v~-------l~p~i~~-f---  151 (281)
                      ..|.|+....|+.....+.++|+.+|+..++.+..  .| ++++.++|.+|++.++|+.+|       +.|.+.- |   
T Consensus        74 ~~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgIPSVVYG~fgl~vl~P~l~~~~~~~  153 (310)
T COG0573          74 QYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLAPFLRDVFGPP  153 (310)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             55649999999999999999998788896888776358287888899999998169711778999999999999985220


Q ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --------210178899999988789999958874129989999999607882010122368862679999999999999
Q gi|254780341|r  152 --------GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS  223 (281)
Q Consensus       152 --------G~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~  223 (281)
                              |.+..++.+...++.+|.++..+.+.+++||++++|++.++|+||||..+||.+|++.|+|++|+-.+++-+
T Consensus       154 ~~~~~~~~g~~~L~a~ivL~IMIiP~i~Sls~da~~~VP~~lreas~aLGaTkweti~kVilpaa~~GIv~a~iLglgRA  233 (310)
T COG0573         154 LGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALGATKWETIRKVILPAARSGIVGAVILGLGRA  233 (310)
T ss_pred             CHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             00103645520999999999999999999999999958799999998738871004336539866877999999998898


Q ss_pred             HHHHHHHHHH-CC------------CCHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999997-05------------880499999997----407898999999999999999999998742105
Q gi|254780341|r  224 LSMVVVTALV-GS------------NGLGVPVLRALN----TVDIGRGFESGLCIVILAIILDRLFSIPDPRDR  280 (281)
Q Consensus       224 l~~vvia~~i-g~------------~GLG~~i~~a~~----~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~  280 (281)
                      +.-...-.|+ |.            .-+...+.....    ..+..-.++.++...++..++.-+.+...||.|
T Consensus       234 iGETmAV~mv~Gn~~~~~~slf~p~~Tits~ia~~~gea~~~~~~~aL~~~glvLfvitl~~n~~a~~i~~r~~  307 (310)
T COG0573         234 LGETMAVTMVIGNTARIPLSLFSPGTTLTSIIANEFGEASGGLHTSALFALGLVLFVITLLLNILARYIVRRRR  307 (310)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             72899999996175557754368865499999998631231268999999999999999999999999976663


No 19 
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.88  E-value=8.4e-20  Score=137.69  Aligned_cols=139  Identities=31%  Similarity=0.512  Sum_probs=121.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHCCCHHHHHHHHCCCCCHHHHHH----HHC--CCCHHH
Q ss_conf             48449999999999999978876667764210121---123202350345442012021011000----000--210178
Q gi|254780341|r   87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY---PRFYSIIRLFLDSMQTIPTFVYLIPAL----VLF--GLGMVP  157 (281)
Q Consensus        87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~---~~~~~~~~p~l~~~~~iP~~v~l~p~i----~~f--G~g~~~  157 (281)
                      .|.-+....|+.++..+.++++.+|+..|+++.++   .+..+.++-..|.+.++||++|-....    ..+  |.+..+
T Consensus        67 gGi~~Ai~GTl~~~~~~~li~~PiGv~aaIYL~EYa~~~~~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~la  146 (292)
T COG0581          67 GGIGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSALA  146 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             73699999999999999999998999999999997478729999999999880684499999999999999777617999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999998878999995887412998999999960788201012236886267999999999999999
Q gi|254780341|r  158 GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS  225 (281)
Q Consensus       158 ~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~  225 (281)
                      +..+..+..+|.++|.|++++|+||++++|++.++|+||||+++||.+|+|+|+|++|+-.++.-+..
T Consensus       147 GaLaLall~LP~iirtteeaL~~VP~~~ReAs~aLGasKwqtI~~vvlP~A~pGIiTGviLaiaR~~G  214 (292)
T COG0581         147 GALALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGIITGVILAIARAAG  214 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999888999999999980899999999974984878978888971475899999999999987


No 20 
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed
Probab=99.88  E-value=2.2e-20  Score=141.22  Aligned_cols=166  Identities=23%  Similarity=0.325  Sum_probs=132.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCC-----------
Q ss_conf             13484499999999999999788766677642101211-232023503454420120210110000002-----------
Q gi|254780341|r   85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG-----------  152 (281)
Q Consensus        85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG-----------  152 (281)
                      .+.++|+...+|+.....++.++.++|+++++.+.|.+ +.++.++.++.+...+|+++........||           
T Consensus         3 ~~p~~w~al~~Sl~~a~~s~~~~~~ig~~~A~~l~r~~~~~~~~l~~l~~lp~~~P~iv~~~~~~~~~~~~g~~~~~l~~   82 (229)
T PRK09421          3 LSPPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSVVHLPLVLPPVVTGYLLLISMGRRGFIGQWLYE   82 (229)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             98899999999999999999999999999999999613530899999999999989999999999971445852678999


Q ss_pred             ---CC----HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---10----17889999998878999995887412998999999960788201012236886267999999999999999
Q gi|254780341|r  153 ---LG----MVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS  225 (281)
Q Consensus       153 ---~g----~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~  225 (281)
                         +.    ....+++..++.+|.+++....+++++|+++.|+|+++|+|+||+++||.+|.++|++++|.=.+...++.
T Consensus        83 ~~gi~~~~~~~g~~l~~~~~~~P~~~~~~~~~l~~i~~~l~EAA~~lGAs~~~~f~~V~lPl~~P~i~~~~il~F~~s~~  162 (229)
T PRK09421         83 WFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLG  162 (229)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             82822234599999999999999999999999985998999999885992646759989998999999999999999999


Q ss_pred             HHHHHH-HHCC-----CCHHHHHHHHHHHHC
Q ss_conf             999999-9705-----880499999997407
Q gi|254780341|r  226 MVVVTA-LVGS-----NGLGVPVLRALNTVD  250 (281)
Q Consensus       226 ~vvia~-~ig~-----~GLG~~i~~a~~~~~  250 (281)
                      .....- +.+.     +-+...++...++.+
T Consensus       163 ef~~~~~l~~~~p~~~~tl~~~iy~~~~~~~  193 (229)
T PRK09421        163 EFGATITFVSNIPGETQTIPSAMYTLIQTPG  193 (229)
T ss_pred             HHHHHHHHHCCCCCCCEEHHHHHHHHHHCCC
T ss_conf             9769998954899860217999999987389


No 21 
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=99.87  E-value=3.1e-20  Score=140.26  Aligned_cols=197  Identities=23%  Similarity=0.290  Sum_probs=161.0

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHC---C--CCHHH
Q ss_conf             213484499999999999999788766677642101211-23202350345442012021011000000---2--10178
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLF---G--LGMVP  157 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~f---G--~g~~~  157 (281)
                      ..+.++|+...+|+.....++.++.++|.+.++..+|.+ +.++.++-.+.....+|.++...+....|   |  .|..+
T Consensus        51 f~~~~~~~~~~nSl~ia~~~~~~~~~lg~~~A~~l~r~~~~~~~~~~~l~~~p~~~P~~v~~i~l~~~~~~~g~~~~~~~  130 (257)
T PRK09500         51 MNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWS  130 (257)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             87937999999999999999999999999999999752677456999999999997999999999999997351320999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf             8999999887899999588741299899999996078820101223688626799999999999999999999997058-
Q gi|254780341|r  158 GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-  236 (281)
Q Consensus       158 ~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-  236 (281)
                      .+++.+.+.+|..++....+++++|+|+.|||+.+|||+||.++||.+|.++|++++|.=.+...++....+.-+++++ 
T Consensus       131 lil~~~~~~lP~~~~~i~~~l~~i~~~l~EAA~~lGAs~~~~f~~VilPl~~P~i~~~~il~F~~s~~ef~~~~~l~g~~  210 (257)
T PRK09500        131 LLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPS  210 (257)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99888885150279999999971796999999872999879636312984799999999999999999999999752899


Q ss_pred             --CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             --80499999997407898999999999999999999998742105
Q gi|254780341|r  237 --GLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR  280 (281)
Q Consensus       237 --GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~  280 (281)
                        =+...+++..+..|.+...+......++.+++=-+.++..||++
T Consensus       211 ~~tlp~~i~~~~~~~~~~~~~Ala~il~~i~~~~~~l~~~l~r~~~  256 (257)
T PRK09500        211 YEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVILSQLLARDKT  256 (257)
T ss_pred             CEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             6028999999987378759999999999999999999999866547


No 22 
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=99.86  E-value=4.8e-20  Score=139.13  Aligned_cols=194  Identities=22%  Similarity=0.315  Sum_probs=154.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHC-----CCCHHHH
Q ss_conf             1348449999999999999978876667764210121-123202350345442012021011000000-----2101788
Q gi|254780341|r   85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLF-----GLGMVPG  158 (281)
Q Consensus        85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~f-----G~g~~~~  158 (281)
                      .+.++|+...+|+.....+..++.++|++.++.+.|. .+.++.++.....--.+|.++..+-...+|     ..|..+.
T Consensus        59 ~~~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~i  138 (267)
T COG1177          59 SDPRLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTI  138 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             78489999999999999999999999999999999704026899999997424150999999999999986887529999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
Q ss_conf             999999887899999588741299899999996078820101223688626799999999999999999999997058--
Q gi|254780341|r  159 IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN--  236 (281)
Q Consensus       159 i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~--  236 (281)
                      +++++.+++|.+++.....+++.|++++|||+++|||+||+++||.+|..+|+|++|.-.+...++...+++.+++++  
T Consensus       139 vlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~gp~~  218 (267)
T COG1177         139 VLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAGPGF  218 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
T ss_conf             99999998668999999999738967999998769988889899769752799999999999999867786311328998


Q ss_pred             -CHHHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q ss_conf             -80499999997407898999999999999----9999999987421
Q gi|254780341|r  237 -GLGVPVLRALNTVDIGRGFESGLCIVILA----IILDRLFSIPDPR  278 (281)
Q Consensus       237 -GLG~~i~~a~~~~~~~~~~~~~l~Iv~la----i~lDri~~~~~~r  278 (281)
                       -|..+++...++...+..-+....+..+.    ....++.+..++|
T Consensus       219 ~TLP~~i~s~~r~~~~P~i~Alstll~~~~~ll~~~~~~~~~~~~~~  265 (267)
T COG1177         219 TTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILLASRLLRRRARK  265 (267)
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             72189999986558981999999999999999999999986433321


No 23 
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=99.86  E-value=5.1e-20  Score=138.96  Aligned_cols=196  Identities=18%  Similarity=0.282  Sum_probs=147.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHC-------------
Q ss_conf             348449999999999999978876667764210121-123202350345442012021011000000-------------
Q gi|254780341|r   86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLF-------------  151 (281)
Q Consensus        86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~f-------------  151 (281)
                      +..+|+...+|+.....++.+++++|.|++.++.+. .+.++..+-.......+|+++.......++             
T Consensus        58 ~~~~~~~l~nSl~~a~~~tvi~~~ig~~~A~~l~~~~~~~r~~~~~l~~~P~~~p~~v~~~~~~~~~~~~G~ln~~l~~l  137 (285)
T PRK09497         58 DPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLGTKGYLNEFLLWL  137 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf             38999999999999999999999999998886301675438999999999998799999999999814330788999981


Q ss_pred             CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21---------017889999998878999995887412998999999960788201012236886267999999999999
Q gi|254780341|r  152 GL---------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIML  222 (281)
Q Consensus       152 G~---------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~  222 (281)
                      |.         +..+.+++.+...+|.+++....+++++|+++.|||+.+|||+||+++||.+|..+|++.+|.-.+...
T Consensus       138 g~~~~p~~~l~~~~~vii~~v~~~lPf~~l~l~a~l~~i~~~l~EAA~~lGAs~~~~F~~I~lPl~~Pgi~~~~il~fi~  217 (285)
T PRK09497        138 GVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLP  217 (285)
T ss_pred             CCCCCCHHHHCCHHHHHHHHHEEECHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEHHEEEHHHHHHHHHHHHHHHHH
T ss_conf             57566235423498887875313120677437878840896899999875999789132022081089999999999999


Q ss_pred             HHHHHHHHHHHCCCC---HHHHHHHH-HHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999970588---04999999-974078989999999----999999999999987421059
Q gi|254780341|r  223 SLSMVVVTALVGSNG---LGVPVLRA-LNTVDIGRGFESGLC----IVILAIILDRLFSIPDPRDRI  281 (281)
Q Consensus       223 ~l~~vvia~~ig~~G---LG~~i~~a-~~~~~~~~~~~~~l~----Iv~lai~lDri~~~~~~r~~~  281 (281)
                      ++..-.+..+.|+++   ++..+++. .+..|.+.+-+..+.    +.++..+..|..|..+||.++
T Consensus       218 s~~~F~~~~~lgG~~~~~l~~~i~~~~~~~~~~~~aaA~svil~~i~~~~~~i~~r~~k~~~kk~~~  284 (285)
T PRK09497        218 AMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKVEL  284 (285)
T ss_pred             HHHHHHEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
T ss_conf             9887621001048975529999999998706906999999999999999999999999995301416


No 24 
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=99.86  E-value=1.2e-19  Score=136.80  Aligned_cols=196  Identities=18%  Similarity=0.231  Sum_probs=139.1

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHH-------------H
Q ss_conf             2134844999999999999997887666776421012112-3202350345442012021011000-------------0
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPAL-------------V  149 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i-------------~  149 (281)
                      ..+..+|+...+|+.....++++|+++|.|+++.++|.+. .++.++-++..-.-+|.++-..--.             .
T Consensus        90 f~d~~y~~a~~nSL~iA~~sT~i~lliG~P~Ay~iar~~~~~r~~l~~lvilP~~~s~lVr~~aw~~iL~~~G~ln~~L~  169 (317)
T PRK10683         90 TDDPLYFDAYLQSLQVAAISTICCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLL  169 (317)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             76978999999999999999999999999999999938861789999999999706799999999999731434878999


Q ss_pred             HCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0021---------0178899999988789999958874129989999999607882010122368862679999999999
Q gi|254780341|r  150 LFGL---------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTI  220 (281)
Q Consensus       150 ~fG~---------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~  220 (281)
                      .+|.         ++.+.++..+...+|.++...+.+++++|+++.|||+++|||+||+++||.+|.++|+|++|.-.+.
T Consensus       170 ~lGli~~pl~ll~t~~aViig~v~~~lPfmvL~l~a~L~~id~~L~EAA~~LGAs~~~~F~~VtLPL~~PGIiag~lLvF  249 (317)
T PRK10683        170 WLGVIDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVF  249 (317)
T ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEEECCCHHHHHHHHHHHH
T ss_conf             96044676322564589999999999999999999999858908999998769986554002320621899999999999


Q ss_pred             HHHHHHHHHHHHHCCC---CHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999997058---804999999-9740789899999999999999999999874210
Q gi|254780341|r  221 MLSLSMVVVTALVGSN---GLGVPVLRA-LNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       221 ~~~l~~vvia~~ig~~---GLG~~i~~a-~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~  279 (281)
                      ..++..-++.++.|++   =+|..+++. .++.|.+.+-+..++..++.++.--+.+..++|+
T Consensus       250 i~a~g~F~iP~lLGG~~~~~i~~~i~~~f~~~~dwp~aaAlavvLl~i~iv~~~~~~r~~~k~  312 (317)
T PRK10683        250 IPAVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKS  312 (317)
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999888776866429985629999999998746805899999999999999999999998874


No 25 
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=99.85  E-value=1e-19  Score=137.17  Aligned_cols=160  Identities=28%  Similarity=0.538  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCC---------HHHHHHHHH
Q ss_conf             9999999999978876667764210121-123202350345442012021011000000210---------178899999
Q gi|254780341|r   94 TETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG---------MVPGIVATI  163 (281)
Q Consensus        94 ~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g---------~~~~i~a~~  163 (281)
                      .+|+.....+..++.++|+++|++++++ ++.++.++++.+..+.+|+++..+....+|+..         ..+.++...
T Consensus         2 ~nSl~i~~~~~~i~~~ig~~~a~~~~~~~~~~~~~~~~~~~i~~~iP~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   81 (190)
T cd06261           2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILAL   81 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             87999999999999999999999999518508899999999999803999999999999841232214789999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHH
Q ss_conf             9887899999588741299899999996078820101223688626799999999999999999999997058---8049
Q gi|254780341|r  164 VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN---GLGV  240 (281)
Q Consensus       164 i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~---GLG~  240 (281)
                      +...|...+....+++++|+|+.|+||++|+|+||+++|+.+|.++|.++++.......++....+.+++|++   +.+.
T Consensus        82 ~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~  161 (190)
T cd06261          82 LLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGT  161 (190)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf             99999999999999983899999999986997346569987996399999999999999999999999996899996839


Q ss_pred             HHHHHHH---HHCHHH
Q ss_conf             9999997---407898
Q gi|254780341|r  241 PVLRALN---TVDIGR  253 (281)
Q Consensus       241 ~i~~a~~---~~~~~~  253 (281)
                      ......+   ..|.+.
T Consensus       162 ~~~~~~~~~~~~~~~~  177 (190)
T cd06261         162 GLLLIFAILFPGDLGV  177 (190)
T ss_pred             HHHHHHHHHHCCCHHH
T ss_conf             9999999987578699


No 26 
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=99.85  E-value=1.1e-19  Score=136.94  Aligned_cols=196  Identities=18%  Similarity=0.246  Sum_probs=152.9

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCC---------
Q ss_conf             21348449999999999999978876667764210121--1232023503454420120210110000002---------
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY--PRFYSIIRLFLDSMQTIPTFVYLIPALVLFG---------  152 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~--~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG---------  152 (281)
                      ..+.++|+...+|+.....++.++.++|.+.++...|.  .+.++.++.++..-..+|+++........|+         
T Consensus        56 f~~~~~~~a~~~Sl~ia~~~t~i~~~lG~~~A~~l~r~~~~~g~~~~~~l~~~Pl~vP~iv~gl~l~~~f~~~g~~~g~~  135 (281)
T PRK10592         56 FRDDAMMSAVGLSLTIAACAATMAAILGTIAAVVMVRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALGHAIGWP  135 (281)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             77978999999999999999999999999999999980553306999999998998678999999999999846322532


Q ss_pred             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --101788999999887899999588741299899999996078820101223688626799999999999999999999
Q gi|254780341|r  153 --LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVT  230 (281)
Q Consensus       153 --~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia  230 (281)
                        .|....+++.+.++.|.+.+....+++++|+++.|||+++|||+||.++||.+|..+|++++|.=.+...|+...++.
T Consensus       136 ~~~~~~~i~i~~~~~~~P~~~~~i~a~l~~id~~leEAA~~LGAs~~~~f~~V~LPli~Pgiiag~il~F~~s~~ef~~~  215 (281)
T PRK10592        136 ADRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIA  215 (281)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             00237899999999999999999999998589279999988199988883435417115989999999999999877788


Q ss_pred             HHHCCC---CHHHHHHHHHHHHCHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHC
Q ss_conf             997058---8049999999740789899999-99---9999999999999874210
Q gi|254780341|r  231 ALVGSN---GLGVPVLRALNTVDIGRGFESG-LC---IVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       231 ~~ig~~---GLG~~i~~a~~~~~~~~~~~~~-l~---Iv~lai~lDri~~~~~~r~  279 (281)
                      .++|++   -|...++...+....+..-+.. +.   +.++.++..++.+.-+||+
T Consensus       216 ~~l~g~~~~TLpv~iy~~~~~~~~p~~~A~~~l~~~v~~~~~~ia~~l~~R~~k~r  271 (281)
T PRK10592        216 SFVSGPGATTLPMLVFSSVRMGVNPEINALATLILGVVGIVGFIAWYLMARAEKQR  271 (281)
T ss_pred             HHEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             62108998456999999987179879999999999999999999999998889887


No 27 
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.84  E-value=7.9e-20  Score=137.83  Aligned_cols=189  Identities=24%  Similarity=0.350  Sum_probs=149.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCC-------------
Q ss_conf             484499999999999999788766677642101211-232023503454420120210110000002-------------
Q gi|254780341|r   87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG-------------  152 (281)
Q Consensus        87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG-------------  152 (281)
                      ...|....-|+.....++++++.+|++++++++|.+ +..+.++.++...-.+|+.|.-..++..||             
T Consensus         3 ~~~~~~l~LSlkvA~ist~~~l~lgi~~a~~Lar~~~~~k~ll~~lv~LPLVLPPtV~G~~LLi~fgr~g~iG~~l~~~~   82 (225)
T COG4149           3 PEELTALLLSLKVALISTLLLLPLGIALAYLLARRRFRGKSLLESLVLLPLVLPPVVLGFLLLVLFGRNGFIGQFLEDWF   82 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf             67888999999999999999999999999999725577630999999732368953899999999747770678999975


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----101788999999887899999588741299899999996078820101223688626799999999999999999
Q gi|254780341|r  153 -----LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMV  227 (281)
Q Consensus       153 -----~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~v  227 (281)
                           ++...++++..++++|.+++....+++++|+++.|+|+++|+||||+++||.||.++|+|++|+-    +++.- 
T Consensus        83 g~~~~Fs~~gavlAs~vvslPlmv~~~~~a~~~id~~le~aA~tlGas~~~vf~~i~LPLalpGIlag~i----LsFAr-  157 (225)
T COG4149          83 GLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAARTLGASRWEVFFRITLPLALPGILAGVI----LSFAR-  157 (225)
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEECCCCHHHHHHHHH----HHHHH-
T ss_conf             9707984489999999998898999999999856845999999818880213100140221067999999----99999-


Q ss_pred             HHHHH-----HCC------CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999-----705------880499999997407898999999999999999999998742105
Q gi|254780341|r  228 VVTAL-----VGS------NGLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR  280 (281)
Q Consensus       228 via~~-----ig~------~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~  280 (281)
                      ..+|+     +++      +-+--.++.+.|..|.+++....+..+.++++.=-+..+.+||++
T Consensus       158 alGEFGAtlm~aGNIpG~T~Tlp~aIY~~~q~g~~~~A~~l~li~v~is~~~L~~~~~l~~~~~  221 (225)
T COG4149         158 ALGEFGATLMFAGNIPGETQTLPLAIYTAVQAGNYALAHRLVLILVVISLLVLFVSEWLARRSS  221 (225)
T ss_pred             HHHCCCEEEEEECCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8620570798754788853110699999998187889999999999999999999999987642


No 28 
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family describes PstC, which is homologous to PstA (IPR005672 from INTERPRO). In the Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016021 integral to membrane.
Probab=99.84  E-value=2.8e-19  Score=134.57  Aligned_cols=188  Identities=26%  Similarity=0.412  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCH-------HHHHHHH-C-----------
Q ss_conf             9999999999997887666776421012--11232023503454420120210-------1100000-0-----------
Q gi|254780341|r   93 TTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVY-------LIPALVL-F-----------  151 (281)
Q Consensus        93 ~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~-------l~p~i~~-f-----------  151 (281)
                      ..-|+.-...+.++|+.+|+..++.+.+  .||+++.++|.+|++.++||.+|       +.|.+-- |           
T Consensus        73 i~GTl~~~~~A~liA~P~~i~~Aif~~e~aP~~~~~~l~~~~ELLAgIPSVvYG~wG~~~l~P~l~~~~~~~~~~~~~~i  152 (317)
T TIGR02138        73 IVGTLITSLIAILIAVPVGIGIAIFLSEIAPKRVKSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKDHFQPFLGSNFGWI  152 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999999999999999985251135699999999722359999999999999999998867865313532


Q ss_pred             ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------------21017889999998878999995887412998999999960788201012236886267999999999
Q gi|254780341|r  152 ------------GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT  219 (281)
Q Consensus       152 ------------G~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~  219 (281)
                                  |.|-.++.+...++.+|.++..++|.+|+||++++|++-++|+||||+.+||.+|++.|+|++|+=.+
T Consensus       153 P~~~~~~~~~~~G~~~L~a~~vL~IMIlPt~as~s~D~~~~VP~~~kea~~ALGAT~wetI~~v~lP~a~~GIv~a~~Lg  232 (317)
T TIGR02138       153 PLFGQLFSGPPNGYGLLTAGIVLAIMILPTIASISRDALRAVPRSYKEASLALGATKWETIRKVILPAARSGIVGAVVLG  232 (317)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             32122368998316899999999999999999999999973556788898770686043355533200021899999999


Q ss_pred             HHHHHHHHHHHHHHCCC--CHHH-HH---H----------------HHH--HHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999997058--8049-99---9----------------999--74078989999999999999999999987
Q gi|254780341|r  220 IMLSLSMVVVTALVGSN--GLGV-PV---L----------------RAL--NTVDIGRGFESGLCIVILAIILDRLFSIP  275 (281)
Q Consensus       220 ~~~~l~~vvia~~ig~~--GLG~-~i---~----------------~a~--~~~~~~~~~~~~l~Iv~lai~lDri~~~~  275 (281)
                      ++-|+.-.+.-.|+.++  ++.. ..   .                ++.  +.....-.++.++...++.+++--+.+..
T Consensus       233 lGRAlGETmAV~mv~Gn~p~~~~~~~~~~f~~~~~T~~~~Ia~~~g~a~~g~~~~~~aL~~~glvLfvitl~~n~~~~~i  312 (317)
T TIGR02138       233 LGRALGETMAVAMVIGNAPSLNRPIPLNLFSPYGTTITSLIANEFGEASGGNSVHVSALFALGLVLFVITLLVNILARYI  312 (317)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999724323444412022335689999999850666688842689999999999999999999999998


Q ss_pred             HHHCC
Q ss_conf             42105
Q gi|254780341|r  276 DPRDR  280 (281)
Q Consensus       276 ~~r~~  280 (281)
                      .||.|
T Consensus       313 ~~~~~  317 (317)
T TIGR02138       313 VRRRK  317 (317)
T ss_pred             HHCCC
T ss_conf             53069


No 29 
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.83  E-value=3.1e-18  Score=128.29  Aligned_cols=193  Identities=17%  Similarity=0.237  Sum_probs=149.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH----HCCCHHHHHHHHCCCCCHHHHHHHHC-----CC--CH
Q ss_conf             484499999999999999788766677642101211232----02350345442012021011000000-----21--01
Q gi|254780341|r   87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFY----SIIRLFLDSMQTIPTFVYLIPALVLF-----GL--GM  155 (281)
Q Consensus        87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~----~~~~p~l~~~~~iP~~v~l~p~i~~f-----G~--g~  155 (281)
                      ...|+...+|+.....+..++.++|++.++...+.++-+    +.++-....-..+|..+...-.+..|     +.  +.
T Consensus        64 ~~~~~a~~~Sl~va~~~a~~a~~lg~~~a~~l~~~~~~~~~~~~~l~~l~~lPl~vP~iv~gl~ll~~f~~~~~~l~~t~  143 (272)
T TIGR03255        64 GAAFDALAASLEIGFCAAAFALACGLGAALALALEGRKRQGVGALLDALFMLPNAIPSVSLGLAILIAFHAGPLDLNGSL  143 (272)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             81689999999999999999999999999999986215554899999999989989999999999999995684425579


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             78899999988789999958874129989999999607882010122368862679999999999999999999999705
Q gi|254780341|r  156 VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS  235 (281)
Q Consensus       156 ~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~  235 (281)
                      ...+++.++..+|...+....+++++|+++.|+|+++|+|+||.++||.+|...|++++|.-.+...++....+.-++++
T Consensus       144 ~~liiah~~~~lP~~~~~v~a~l~~id~~leeAA~~LGAs~~~~f~~V~LPli~pgilag~~l~F~~S~~ef~~s~~l~~  223 (272)
T TIGR03255       144 AIVLFAHFALILAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLLMPAIMAALALGFALSLGELGATLMIYP  223 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
T ss_conf             99999999999999999999999737930999998869989999999987967999999999999999977615323418


Q ss_pred             C---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8---8049999999740789899999999999999999999874210
Q gi|254780341|r  236 N---GLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       236 ~---GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~  279 (281)
                      +   -+...+++..++.+.+...+.......+.++.=-+.+...||.
T Consensus       224 ~~~~TLpv~i~~~~~~g~~~~aaAls~ili~~s~v~li~~~~~~~R~  270 (272)
T TIGR03255       224 PGFATLPIAIFGATDRGNIADAAALSILLLAASLLALIAIAAIAKRL  270 (272)
T ss_pred             CCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99724799999998767848899999999999999999999999763


No 30 
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672   Bacterial binding protein-dependent transport systems ,  are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown ,  that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems  to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=99.83  E-value=5.4e-20  Score=138.84  Aligned_cols=194  Identities=23%  Similarity=0.348  Sum_probs=148.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHCCCHHHHHHHHCCCCCHHHHHH----------HHCCC
Q ss_conf             4844999999999999997887666776421012---1123202350345442012021011000----------00021
Q gi|254780341|r   87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW---YPRFYSIIRLFLDSMQTIPTFVYLIPAL----------VLFGL  153 (281)
Q Consensus        87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~---~~~~~~~~~p~l~~~~~iP~~v~l~p~i----------~~fG~  153 (281)
                      .|.++....|+.+++.+.++|+.+|+..|+++.+   .++..+.++-..|.+..+||+++-....          .-+|.
T Consensus        57 GGi~~AivGT~~~~~~~~~ia~PlGi~~aiYL~EYa~~~~~~~~ir~~~~~LaG~PSIv~GLFg~~~fv~~~~i~l~~~~  136 (302)
T TIGR00974        57 GGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYAKEGRFTKFIRFAVDVLAGVPSIVVGLFGYALFVKTLGIYLGGGF  136 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             53367799999999999999999999988875530678940056878888752116999999999999977686452206


Q ss_pred             CHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_conf             0178899-999988789999958874129989999999607882010122368862679999999999999999------
Q gi|254780341|r  154 GMVPGIV-ATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSM------  226 (281)
Q Consensus       154 g~~~~i~-a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~------  226 (281)
                      +-.++-. +..+..+|.++|.|+|+++.||++++|++-++|+||||+++||.||+|+|+|++|+=.++.-+..-      
T Consensus       137 S~laG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~TG~iL~iaR~~GETAPLl~  216 (302)
T TIGR00974       137 SALAGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILTGIILSIARAAGETAPLLF  216 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77879999999999999999989999724788889999726002113322441310368999999999999998999999


Q ss_pred             -----H-HHHH----------------HHCC-CCHHHHHHHHHHH----HCHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----9-9999----------------9705-8804999999974----0789----89999999999999999999987
Q gi|254780341|r  227 -----V-VVTA----------------LVGS-NGLGVPVLRALNT----VDIG----RGFESGLCIVILAIILDRLFSIP  275 (281)
Q Consensus       227 -----v-via~----------------~ig~-~GLG~~i~~a~~~----~~~~----~~~~~~l~Iv~lai~lDri~~~~  275 (281)
                           . ....                +.+. ..|...+++....    .+..    +..++.++..++-+.+--..+..
T Consensus       217 TA~~~~~~~~~~~~~N~~~~~p~~~d~l~~~~~~L~~~iY~~~~~~~~~~~~~~~~~~a~~aalvL~~~vl~~N~~a~~~  296 (302)
T TIGR00974       217 TAGGSSSFLLGNSVLNDLPKAPLGEDLLLSPPAALPVLIYNLASELANAPYSEARNELAWAAALVLIVLVLLLNLIARLL  296 (302)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988776410356677767777754225764136888887640146788426888999999999999999999999999


Q ss_pred             HHHCC
Q ss_conf             42105
Q gi|254780341|r  276 DPRDR  280 (281)
Q Consensus       276 ~~r~~  280 (281)
                      .||.|
T Consensus       297 ~~~~~  301 (302)
T TIGR00974       297 RRRFK  301 (302)
T ss_pred             HHHHC
T ss_conf             97524


No 31 
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein.
Probab=99.82  E-value=7.1e-18  Score=126.10  Aligned_cols=194  Identities=15%  Similarity=0.197  Sum_probs=138.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC---------C
Q ss_conf             484499999999999999788766677642101211---2320235034544201202101100000021---------0
Q gi|254780341|r   87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP---RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL---------G  154 (281)
Q Consensus        87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~---~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~---------g  154 (281)
                      .+.|+...+|+.....+..++.++|++.++...|++   +.++.++-+.....++|..+...-.+..|..         |
T Consensus       328 ~~~~~a~~nSl~la~~aa~i~~~l~~~~ay~i~r~r~~~~~~~~l~~l~~lp~aiPgiVlalg~i~~f~~~~~~l~~Lyg  407 (546)
T TIGR03262       328 GGGWEAYKNSLRLAATTALIGTILVFGGAYLIEKTRGFGLLRGVLRFLAILPMAVPGLVLGLGYIFFFNAPTNPLNGLYG  407 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             56899999999999999999999999999999982141267999999998535168999999999998522203678888


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             178-8999999887899999588741299899999996078820101223688626799999999999999999999997
Q gi|254780341|r  155 MVP-GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV  233 (281)
Q Consensus       155 ~~~-~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i  233 (281)
                      ... -+++-++..+|...+....+++++|+++.|+|+++|+|+|++++||.+|...|++++|.-.....++....+.-+.
T Consensus       408 T~~iLilay~vr~lp~~~~~i~a~l~qI~~~leeAA~~lGas~~~~~~rI~lPLl~p~ilag~~lvFi~~m~El~~tllL  487 (546)
T TIGR03262       408 TMALLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFL  487 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_conf             99999999999999998999999987489509999987597966672532078028999999999999999876878787


Q ss_pred             C---CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCC
Q ss_conf             0---58804999999974078989999999999999----99999998742105
Q gi|254780341|r  234 G---SNGLGVPVLRALNTVDIGRGFESGLCIVILAI----ILDRLFSIPDPRDR  280 (281)
Q Consensus       234 g---~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai----~lDri~~~~~~r~~  280 (281)
                      .   .+=++..+++..+..+++.+.+..+.++++..    +++++.++.+||.|
T Consensus       488 ~~~~~~tl~~~i~~~~~~g~~~~Aaa~s~ilvli~~i~~~l~~~~~rr~~~r~~  541 (546)
T TIGR03262       488 YSPDTKLASVAILNMDDAGDIAPAAAMATLIVLTSAVAKLLFALASRRLLRRTQ  541 (546)
T ss_pred             CCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             399980299999998658775889999999999999999999999988446876


No 32 
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.82  E-value=3.1e-17  Score=122.26  Aligned_cols=179  Identities=28%  Similarity=0.451  Sum_probs=139.7

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHC-----------
Q ss_conf             213484499999999999999788766677642101211-23202350345442012021011000000-----------
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLF-----------  151 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~f-----------  151 (281)
                      ..+..+|+...+|+.....++.++.++|++++.+..|++ +.++.++..+..--.+|+++-..-.+.+|           
T Consensus        49 l~~~~~~~~l~nTl~la~~~~~ls~~lG~~~A~l~~r~~fpGr~~l~~l~~lPl~iP~~V~a~~~~~l~G~~G~~~~l~~  128 (540)
T COG1178          49 LSDPYLWRVLANTLILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVALAWISLFGPSGPLAALLE  128 (540)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             61238999999999999999999999999999999986277179999999999888799999999999767634999998


Q ss_pred             --C------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --2------10178899999988789999958874129989999999607882010122368862679999999999999
Q gi|254780341|r  152 --G------LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS  223 (281)
Q Consensus       152 --G------~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~  223 (281)
                        |      +|....+++...+..|.+.+.+..+++++|++++|+||++|+++||.++||.+|.+.|+|.+|.-...+.+
T Consensus       129 ~~G~~~~~iyg~~Giil~~~~~~~P~~~l~~~~al~~i~~~~~EaAr~LGa~~~~~F~~V~lPllrPai~~~~~Lvf~~~  208 (540)
T COG1178         129 LLGFESPSIYGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAGALLVFMLC  208 (540)
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             74468766466899999999998259999999999838946999998759983228888678877789999999999999


Q ss_pred             HHHHHHHHHHCCC--CHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf             9999999997058--804999999974078989999999999
Q gi|254780341|r  224 LSMVVVTALVGSN--GLGVPVLRALNTVDIGRGFESGLCIVI  263 (281)
Q Consensus       224 l~~vvia~~ig~~--GLG~~i~~a~~~~~~~~~~~~~l~Iv~  263 (281)
                      +...-+-...|.+  -+-..|++.....+ +..-++.+++..
T Consensus       209 l~dFg~p~~LG~~~~Tl~t~IY~~~~~~~-~~~~Aa~la~ll  249 (540)
T COG1178         209 LADFGTPLILGGGYTTLETAIYQAIMSSF-DLARAALLALLL  249 (540)
T ss_pred             HHHHHHHHHHCCCCCEEHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_conf             98644699976987332999999998458-825699999999


No 33 
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=99.80  E-value=3.6e-17  Score=121.82  Aligned_cols=181  Identities=16%  Similarity=0.223  Sum_probs=72.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCC-CC---HHH-
Q ss_conf             844999999999999997887666776421012-----11232023503454420120210110000002-10---178-
Q gi|254780341|r   88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAW-----YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFG-LG---MVP-  157 (281)
Q Consensus        88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~-----~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG-~g---~~~-  157 (281)
                      .+|+...+|+.....+..+++.+|++++....+     .++.++.++-.......+|..+...-....|. .+   ..+ 
T Consensus       326 ~~~~a~~nSl~iA~~aa~la~~lal~la~~~~~~~~r~~~~~~~~l~~~~~lplaiPgiVlg~Gl~ll~~~~~~~~~~~~  405 (536)
T PRK09433        326 ALWQALWTSLRIALLAALLAVLLAMALLLSSRELRLRQKALAAQALELSGMLILAMPGLVLATGLFLLLRNFTDLPQSAL  405 (536)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf             89999999999999999999999999999999999850106889999999988733299999999999862024568899


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             --899999988789999958874129989999999607882010122368862679999999999999999999999705
Q gi|254780341|r  158 --GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS  235 (281)
Q Consensus       158 --~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~  235 (281)
                        .+.+..+.++|...|....+++++|+++.|+++++|+++||+++||++|...|.+.+|.-.+...++....+..+.+.
T Consensus       406 ~ivil~~~l~~lP~a~r~l~~~l~~i~~~le~aA~sLGas~~~~f~~I~lPll~p~i~~a~~l~F~~smgEl~a~~ll~~  485 (536)
T PRK09433        406 GIVILVNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLVEWRALRRPLAQAFAFACALSLGDFGVIALFGS  485 (536)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECC
T ss_conf             99999999999999999999999970175999998869998789698539830999999999999999875370213339


Q ss_pred             C---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf             8---80499999997407898999999999999999
Q gi|254780341|r  236 N---GLGVPVLRALNTVDIGRGFESGLCIVILAIIL  268 (281)
Q Consensus       236 ~---GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~l  268 (281)
                      +   -|..++++..+..+++.+.+..+.++++....
T Consensus       486 ~~~~TLp~~iy~~~~~~~~~~Aa~~allL~ll~~~~  521 (536)
T PRK09433        486 QDFRTLPYLLYQQLGSYRSQDAAVTALLLLLLCLLL  521 (536)
T ss_pred             CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             998618999999872767688999999999999999


No 34 
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=99.80  E-value=3.8e-17  Score=121.70  Aligned_cols=168  Identities=24%  Similarity=0.392  Sum_probs=128.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCC-HHHHHH----------------H
Q ss_conf             84499999999999999788766677642101211-23202350345442012021-011000----------------0
Q gi|254780341|r   88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFV-YLIPAL----------------V  149 (281)
Q Consensus        88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v-~l~p~i----------------~  149 (281)
                      .+|+-..+|+......+++|+++|.|.++++++++ +.+..+.    .+-.+|-.. +++-..                .
T Consensus        63 ~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~la~~~~~~r~~ll----~lvilPfwts~LiR~yawi~iL~~~G~iN~~L~  138 (287)
T COG1176          63 LYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLL----LLVILPFWTSLLIRTYAWIVILGRNGLINQALL  138 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             8999999999999999999999999999999967737999999----999999989999999999999834771648899


Q ss_pred             HCCCCH--------HHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             002101--------78899999988-789999958874129989999999607882010122368862679999999999
Q gi|254780341|r  150 LFGLGM--------VPGIVATIVFS-IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTI  220 (281)
Q Consensus       150 ~fG~g~--------~~~i~a~~i~~-~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~  220 (281)
                      ..|+.+        ..+++...+|. +|.++...+.+++.+|++++|||+++|||+||.++||.+|+++|++.+|+-...
T Consensus       139 ~lGl~~~p~~ll~~~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pGi~aG~~lVF  218 (287)
T COG1176         139 ALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVF  218 (287)
T ss_pred             HCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHH
T ss_conf             76887886798805336768999986599999999999839978999998759976547642032177189999999998


Q ss_pred             HHHHHHHHHHHHHCCC---CHHHHHHHHHHH-HCHHHHHHHHH
Q ss_conf             9999999999997058---804999999974-07898999999
Q gi|254780341|r  221 MLSLSMVVVTALVGSN---GLGVPVLRALNT-VDIGRGFESGL  259 (281)
Q Consensus       221 ~~~l~~vvia~~ig~~---GLG~~i~~a~~~-~~~~~~~~~~l  259 (281)
                      ..++...++-+++|++   =+|..+.+...+ .|.+.+-+..+
T Consensus       219 i~alG~fi~P~lLGG~~~~~ig~lI~~q~~~~~nwp~asA~sv  261 (287)
T COG1176         219 IPALGSFVTPALLGGPKVLMIGNLIYQQFLSARNWPFASALAV  261 (287)
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             9775889988985697525399999999852058447899999


No 35 
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed
Probab=99.80  E-value=1.4e-17  Score=124.33  Aligned_cols=193  Identities=16%  Similarity=0.188  Sum_probs=146.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCHHHHHHHHCCCCCHHHHHHH-----HCCCC---HHHHH
Q ss_conf             449999999999999978876667764210-1211232023503454420120210110000-----00210---17889
Q gi|254780341|r   89 YWQETTETLSLVLVSTFISMFIGVPLGVLA-AWYPRFYSIIRLFLDSMQTIPTFVYLIPALV-----LFGLG---MVPGI  159 (281)
Q Consensus        89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~-~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~-----~fG~g---~~~~i  159 (281)
                      +++-...|+.....+..++.++|+.+|..- .+++..+...+-+.++++++|.++.+.....     +.|+.   ..+++
T Consensus        15 ll~Gl~~Tl~l~~~s~~~g~~lG~~~a~~r~~~~~~l~~~~~~yv~~~RgtPlLv~lf~~yfglp~l~~~i~~~~~~~~v   94 (219)
T PRK09494         15 LLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAFNDLRIDPFSAAV   94 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             99999999999999999999999999999988968999999999999976489999999999899854677748999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             99999887899999588741299899999996078820101223688626799999999999999999999997058804
Q gi|254780341|r  160 VATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG  239 (281)
Q Consensus       160 ~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG  239 (281)
                      ++..+++-....-....|+++||+...|||+++|.|+||+++||.+|+|+...+-.+-......+....+++.+|...+-
T Consensus        95 i~l~l~~~Ay~aEi~R~gi~sVp~GQ~EAA~alG~s~~q~~r~IilPQa~r~~lP~l~n~~i~liK~Tsl~s~Igv~El~  174 (219)
T PRK09494         95 VTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELT  174 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999831879999988598988898964699879998878899999999987999999899999


Q ss_pred             HHHHHH-HHHHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999-974078989999-999999999999999987421059
Q gi|254780341|r  240 VPVLRA-LNTVDIGRGFES-GLCIVILAIILDRLFSIPDPRDRI  281 (281)
Q Consensus       240 ~~i~~a-~~~~~~~~~~~~-~l~Iv~lai~lDri~~~~~~r~~~  281 (281)
                      +.-..- .++++.-+.+.. ++.=.++...++++.++.|||.|+
T Consensus       175 ~~a~~i~~~t~~~~e~~~~~a~iY~~l~~~l~~~~~~lErrl~i  218 (219)
T PRK09494        175 RQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRMKI  218 (219)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999997107189999999999999999999999999987714


No 36 
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This entry describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterised in Escherichia coli , Staphylococcus carnosus  Rhodobacter capsulatus  and Azotobacter vinlandii . Molybdate is chemically similar to sulphate, thiosulphate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulphate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulphate permease proteins and not included in this model.; GO: 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0016021 integral to membrane.
Probab=99.79  E-value=1.1e-17  Score=124.89  Aligned_cols=179  Identities=25%  Similarity=0.383  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCC--H----------------
Q ss_conf             9999999999788766677642101211-23202350345442012021011000000210--1----------------
Q gi|254780341|r   95 ETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG--M----------------  155 (281)
Q Consensus        95 ~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g--~----------------  155 (281)
                      -|+.....++++.+.+|+++|.+++|++ +.+..++.++..--..||.|.-..+++.||..  .                
T Consensus         2 LSlk~A~~~Tl~~~~LGi~~A~~La~~~f~gK~~le~L~~LPLVLPPtV~Gf~LL~~fG~~~G~~G~l~~~~~~~Gl~Ft   81 (212)
T TIGR02141         2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKSLLEALVTLPLVLPPTVLGFYLLLAFGRNSGPIGKLLELLGISGLVFT   81 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHH
T ss_conf             79999999999999999999999988617604544644432663563789999999880357407789886506852466


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf             -7889999998878999995887412998999999960788201012236886267999999999999999999999---
Q gi|254780341|r  156 -VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTA---  231 (281)
Q Consensus       156 -~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~---  231 (281)
                       ...++|.+++++|.+.+....+.+.+|+|++|+||++|+|++++++||.||++.|++++|+=    ++++- .++|   
T Consensus        82 ~~g~vlAs~~VSfPl~v~~~~~a~~~~~~~~~~~ArtLGaS~~~~f~~v~LPL~~pG~l~G~v----L~FAR-~LGEFGA  156 (212)
T TIGR02141        82 FAGAVLASVVVSFPLMVRTIRGAFEAVDPDLEEAARTLGASELRVFLKVTLPLAFPGLLAGAV----LSFAR-ALGEFGA  156 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHHH
T ss_conf             999999999999776899999999862712899998827878998999985732899999999----99997-5021134


Q ss_pred             --HHCC------CCHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --9705------8804999999974-078989999999999999999999987421
Q gi|254780341|r  232 --LVGS------NGLGVPVLRALNT-VDIGRGFESGLCIVILAIILDRLFSIPDPR  278 (281)
Q Consensus       232 --~ig~------~GLG~~i~~a~~~-~~~~~~~~~~l~Iv~lai~lDri~~~~~~r  278 (281)
                        |+|+      +=+=-.|+++.+. .|.+.+....+..+.++++.=-.++..+||
T Consensus       157 tlm~aGNIpGkT~T~plaIY~~v~~lg~~~~A~~l~l~ll~~s~~~ll~~~~~~~R  212 (212)
T TIGR02141       157 TLMFAGNIPGKTRTIPLAIYDAVESLGDYEAAHLLSLVLLALSLIVLLLVELLNKR  212 (212)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             43100469796301767788677057886789999999999999999999875059


No 37 
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769    Bacterial binding protein-dependent transport systems ,  are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown ,  that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems  to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices.    These proteins represent a family of phosphonate uptake transporters., probably responsible for the transport of phosphonate across the inner membrane. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0005887 integral to plasma membrane.
Probab=99.78  E-value=5.3e-18  Score=126.87  Aligned_cols=187  Identities=21%  Similarity=0.297  Sum_probs=164.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             49999999999999978876667764210121----12320235034544201202101100000021017889999998
Q gi|254780341|r   90 WQETTETLSLVLVSTFISMFIGVPLGVLAAWY----PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVF  165 (281)
Q Consensus        90 W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~----~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~  165 (281)
                      -.+..+|+..+..|+.+++++|+++|.+.++|    +|++..++.+.|..|++|..+..-..+...|.|+.+++.|+.++
T Consensus         2 ~~~M~~T~~IA~~~T~~~V~l~~~l~ll~A~NL~Pn~W~~~~VRRLM~~~RA~~E~V~A~lF~~~~~LGP~~~~~A~~IH   81 (192)
T TIGR01097         2 LTKMLVTLNIAVFSTILAVVLSIILGLLAAKNLVPNPWVRQIVRRLMDILRAINEVVIAGLFLVILSLGPIAAVLALFIH   81 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             56899999999999999999999999986752588842104789999999776799999999999950518999999999


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             87899999588741299899999996078820101223688626799999999999999999999997058804999999
Q gi|254780341|r  166 SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRA  245 (281)
Q Consensus       166 ~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~a  245 (281)
                      +.-..-+...+.++++|++..|--|+-|||+.+..+.=.+|+.+|.+.+=.-.-+-....-.++-+++|+||+|..+..+
T Consensus        82 T~G~L~KLl~E~VE~~~~~P~EG~RA~GAN~~E~~~yG~~PQVlP~l~SY~L~RlE~NVR~~T~~G~VG~GGIG~~L~~~  161 (192)
T TIGR01097        82 TIGVLSKLLFEVVEAIDMKPVEGLRAVGANKLERVLYGVLPQVLPLLISYFLLRLEINVRAATVVGAVGAGGIGVLLRLA  161 (192)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             99899999999986158989766523330378899960102676889999999998865555653044787276899998


Q ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9740789899999999999999999999874
Q gi|254780341|r  246 LNTVDIGRGFESGLCIVILAIILDRLFSIPD  276 (281)
Q Consensus       246 ~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~  276 (281)
                      .++++..+..+-.+.+..--..+|.+.++++
T Consensus       162 I~~~~~~~T~A~~~L~~~T~~~~D~lS~~LR  192 (192)
T TIGR01097       162 IRQFQEAKTLALVLLLIVTVFLLDFLSARLR  192 (192)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             6033068899999999999999999877409


No 38 
>CHL00187 cysT sulfate transport protein; Provisional
Probab=99.78  E-value=3.2e-17  Score=122.15  Aligned_cols=154  Identities=23%  Similarity=0.289  Sum_probs=128.2

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC--------
Q ss_conf             2213484499999999999999788766677642101211-2320235034544201202101100000021--------
Q gi|254780341|r   83 LIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL--------  153 (281)
Q Consensus        83 ~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~--------  153 (281)
                      ...+...|+...+|+.....++.++.++|+|+++...|++ +.++.++.++.....+|+.+.....+..||.        
T Consensus        45 ~~~~~~~~~~~~~Sl~~s~~~t~i~~~ig~~~A~~l~r~~~~gk~~~~~l~~lP~~iP~~v~a~~~~~~f~~~G~~~~~l  124 (235)
T CHL00187         45 IATEPIALSAYSLTVSMALIAALINGIFGLLIAWVLVRYNFPGKRFLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHIL  124 (235)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             98599999999999999999999999999999999998437618999999999999789999999999964466176899


Q ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---------01788999999887899999588741299899999996078820101223688626799999999999999
Q gi|254780341|r  154 ---------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSL  224 (281)
Q Consensus       154 ---------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l  224 (281)
                               +....+++.+...+|.+.+....+++++|+|+.|||+++|+|+||+++||.+|..+|++++|.-.+.+.++
T Consensus       125 ~~~~~~~~~~~~giii~~~~~~~P~~~~~~~~~l~~i~~~leEAA~~lGAs~~~~f~~I~lPll~p~i~a~~~l~f~~~~  204 (235)
T CHL00187        125 SSLGIKIVFTKLGVLLAMIFVSLPFVVRTIQPVLQEIEKELEEAAWSLGASPWETFWKVIFPPLIPALLTGLALTFSRAI  204 (235)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHH
T ss_conf             97076512309999999999887999998999998602999999987399950411312178468999999999999999


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999999997058
Q gi|254780341|r  225 SMVVVTALVGSN  236 (281)
Q Consensus       225 ~~vvia~~ig~~  236 (281)
                      .......++|++
T Consensus       205 ~eFg~~~~lgGn  216 (235)
T CHL00187        205 GEYGSIVLISSN  216 (235)
T ss_pred             HHHHHHHEEECC
T ss_conf             998789802568


No 39 
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein.
Probab=99.76  E-value=2.6e-16  Score=116.66  Aligned_cols=190  Identities=19%  Similarity=0.263  Sum_probs=143.7

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC--------
Q ss_conf             2213484499999999999999788766677642101211-2320235034544201202101100000021--------
Q gi|254780341|r   83 LIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL--------  153 (281)
Q Consensus        83 ~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~--------  153 (281)
                      ...+.++|+...+|+......+.++.++|+|++.+..|++ +.++.++..+..-..+|+++.....+.+||.        
T Consensus        46 ~l~~~~~~~~l~nTl~l~~~~~~~~~~lg~~~A~~~~r~~~~gr~~~~~~~~lPl~~P~~v~a~~~~~l~~~~G~~~~~l  125 (546)
T TIGR03262        46 YFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLL  125 (546)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             97896899999999999999999999999999999980556469999999999999999999999999983163789998


Q ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------01788999999887899999588741299899999996078820101223688626799999999999999999
Q gi|254780341|r  154 ------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMV  227 (281)
Q Consensus       154 ------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~v  227 (281)
                            |....+++...+.+|.+...+..+++++|+++.|+||++|+|+||.++||.+|...|.+.+|.-...+.+++.-
T Consensus       126 ~~~~iy~~~gii~~~~~~~~P~~~l~~~~al~~~d~~l~eaA~~lGa~~~~~f~~i~lPl~~P~i~~~~lLvf~~~l~~F  205 (546)
T TIGR03262       126 GGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDF  205 (546)
T ss_pred             HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             63715479999999999999999999999997199899999987299988999994478657999999999999997533


Q ss_pred             HHHHHHCCC--CHHHHHHHHH-HHHCHHHHHHHHHHHHHHH---HHHHHHH
Q ss_conf             999997058--8049999999-7407898999999999999---9999999
Q gi|254780341|r  228 VVTALVGSN--GLGVPVLRAL-NTVDIGRGFESGLCIVILA---IILDRLF  272 (281)
Q Consensus       228 via~~ig~~--GLG~~i~~a~-~~~~~~~~~~~~l~Iv~la---i~lDri~  272 (281)
                      -+..++|++  =+-..+++.. +..|.+.+.+..+...+++   +..+|..
T Consensus       206 g~p~ilG~~~~tltt~Iy~~~~~~~d~~~aa~ls~~ll~~~~~~~~~~~~~  256 (546)
T TIGR03262       206 GVPKVIGGDYNVLATDIYKQVIGQQNFPMGAVVGVLLLLPALLAFGIDRAI  256 (546)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             258884387111279999999627886899999999999999999999999


No 40 
>PRK10352 nickel transporter permease NikB; Provisional
Probab=99.75  E-value=1.2e-16  Score=118.68  Aligned_cols=193  Identities=21%  Similarity=0.161  Sum_probs=154.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCC----------CCHH
Q ss_conf             44999999999999997887666776421012--11232023503454420120210110000002----------1017
Q gi|254780341|r   89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFG----------LGMV  156 (281)
Q Consensus        89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG----------~g~~  156 (281)
                      .++..-.|+.+...+..++.++|+|+|++.+.  .++.++.++.+..+..++|+|.....++.+|+          .+..
T Consensus        94 I~~~lp~Tl~L~~~a~~l~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~lli~~fa~~l~~~P~~g~~~~  173 (314)
T PRK10352         94 MLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGW  173 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf             88763788999999999999998599999872079721013105899878731999999999999996476787677833


Q ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8----89999998878999995887412-998999999960788201012236886267999999999999999999999
Q gi|254780341|r  157 P----GIVATIVFSIPTSVRLTRLGIIS-TPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTA  231 (281)
Q Consensus       157 ~----~i~a~~i~~~~pi~~~t~~gl~~-v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~  231 (281)
                      .    -+++..+.......|.+.+.+.+ .++++++.||+-|.|++++++|..+|+|++.+.+.+-..+...++++++-|
T Consensus       174 ~~liLP~l~l~l~~~a~~~r~~R~~~~e~l~~dyv~~ArakGls~~~i~~rh~lrnal~P~it~~~~~~~~ll~GavivE  253 (314)
T PRK10352        174 QHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLSDRQVERRHILRNASLPMITAVGMHIGELIGGTMIIE  253 (314)
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE
T ss_conf             65411199999999999999999999998632999999986989313608652874298899999999999847761001


Q ss_pred             H-HCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Q ss_conf             9-70588049999999740789899999999999----99999999987421059
Q gi|254780341|r  232 L-VGSNGLGVPVLRALNTVDIGRGFESGLCIVIL----AIILDRLFSIPDPRDRI  281 (281)
Q Consensus       232 ~-ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~l----ai~lDri~~~~~~r~~~  281 (281)
                      - .+-+|+|++..++.++.|++......+.++++    -++.|-+....+.|.|.
T Consensus       254 ~iF~~pGlG~ll~~Ai~~rD~p~v~g~~l~~~~~~v~~nli~Dily~~lDPRiR~  308 (314)
T PRK10352        254 NIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRR  308 (314)
T ss_pred             HHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             8754767599999999813889999999999999999999999999964863157


No 41 
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=99.75  E-value=1.3e-16  Score=118.42  Aligned_cols=189  Identities=25%  Similarity=0.378  Sum_probs=142.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC----------
Q ss_conf             13484499999999999999788766677642101211-2320235034544201202101100000021----------
Q gi|254780341|r   85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL----------  153 (281)
Q Consensus        85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~----------  153 (281)
                      .+.+.++..-.|+.....+++++.++|+|+++.+.|.+ +.++.++.++|+--++|+.+.-+-+..+||-          
T Consensus        51 ~~~~~~~a~~~S~~~a~~atl~~~vfg~~~a~vL~R~~fpgk~lvdaivDlP~alP~~VaGiaLl~l~~~~g~~g~~~~~  130 (274)
T COG0555          51 TSPRVLAALKLTLLTAFAATLLNLVFGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGLLGSLLAP  130 (274)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
T ss_conf             48989999999999999999999999989989854035884899999962761375489999999996678740355412


Q ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -------0178899999988789999958874129989999999607882010122368862679999999999999999
Q gi|254780341|r  154 -------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSM  226 (281)
Q Consensus       154 -------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~  226 (281)
                             .....+++....+.|.++|..+.+++++|+|+.|+|+++|+|+||+++||.+|.+.|.+++|.-    ++++-
T Consensus       131 ~gi~~~~t~~GVivA~~Fvs~Pf~vr~v~~~~~~id~~~EeaA~sLGas~~~tf~~V~lP~l~pall~G~~----LsfaR  206 (274)
T COG0555         131 LGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTFRRVILPLLLPALLAGFI----LSFAR  206 (274)
T ss_pred             CCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEEHHHCHHHHHHHHH----HHHHH
T ss_conf             47567646789999999970336899889999855688999998648985511142446413389999999----99999


Q ss_pred             HHHHHH-----HC------CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_conf             999999-----70------5880499999997407898999999999999999---9999987421
Q gi|254780341|r  227 VVVTAL-----VG------SNGLGVPVLRALNTVDIGRGFESGLCIVILAIIL---DRLFSIPDPR  278 (281)
Q Consensus       227 vvia~~-----ig------~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~l---Dri~~~~~~r  278 (281)
                      . ++|+     ++      .+=+.-+++...+.+|++...+..+....+++++   -|..+...+|
T Consensus       207 ~-igEfGavl~iAgn~p~~t~~~pl~Iy~~~~~~d~~~A~ais~vll~iS~~~l~~~r~~~~~~~r  271 (274)
T COG0555         207 S-IGEFGAVLIIAGNTPYKTETLPLLIYTRLESYDLEAAAAISVVLLLISFILLLVIRLLQSRARR  271 (274)
T ss_pred             H-HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8-2454649998147778773038999999983793579999999999999999999999876420


No 42 
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=99.75  E-value=1.5e-16  Score=118.15  Aligned_cols=191  Identities=20%  Similarity=0.261  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC--------CH----
Q ss_conf             4999999999999997887666776421012--112320235034544201202101100000021--------01----
Q gi|254780341|r   90 WQETTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL--------GM----  155 (281)
Q Consensus        90 W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~--------g~----  155 (281)
                      .+..-.|+.+...+..++.++|+|+|+++++  .++.++.++....+.+++|+|.....++.+|+.        |.    
T Consensus        91 ~~~lp~Tl~L~~~a~~i~~~lgi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~lli~iF~~~l~~~P~~g~~~~~  170 (306)
T PRK09471         91 ASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGA  170 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             98889999999999999999999999999983475161999999999999899999999988999721763778887520


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ----78899999988789999958874129-9899999996078820101223688626799999999999999999999
Q gi|254780341|r  156 ----VPGIVATIVFSIPTSVRLTRLGIIST-PPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVT  230 (281)
Q Consensus       156 ----~~~i~a~~i~~~~pi~~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia  230 (281)
                          .-.+++..+.......|.+.+.+.++ ++++++.||+-|.+++++++|..+++|++.+++.+-..+...++++++.
T Consensus       171 ~~~liLP~~~l~l~~~~~~~r~~R~~~~~~l~~dyV~~ArakGl~~~~i~~rh~lrnal~P~it~~~~~~~~ll~Gsviv  250 (306)
T PRK09471        171 LKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVI  250 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             78875369999999999999999999999987799999998699840073001298429999999999999984587121


Q ss_pred             HH-HCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Q ss_conf             99-70588049999999740789899999999999----9999999998742105
Q gi|254780341|r  231 AL-VGSNGLGVPVLRALNTVDIGRGFESGLCIVIL----AIILDRLFSIPDPRDR  280 (281)
Q Consensus       231 ~~-ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~l----ai~lDri~~~~~~r~~  280 (281)
                      |- .+-+|+|++..++.++.|++......+.+.++    -++.|-+....+.|.|
T Consensus       251 E~iF~~PGiG~l~~~Ai~~~D~p~v~g~~l~~a~~~i~~nll~Dil~~~lDPRiR  305 (306)
T PRK09471        251 ETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR  305 (306)
T ss_pred             HHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             0986476759999999980498999999999999999999999999997297558


No 43 
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.74  E-value=4.5e-16  Score=115.25  Aligned_cols=188  Identities=24%  Similarity=0.329  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999978876667764210121-12320235034544201202101100000021017889999998878999
Q gi|254780341|r   93 TTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSV  171 (281)
Q Consensus        93 ~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi~  171 (281)
                      +-.|+...+.++.+++++|+.+|...|.. .++++.++.+.|.+.++|.+..++.+...+|.|....++++.+...|...
T Consensus        85 ~r~SL~I~~~~~~~~~~iG~~lG~iaGy~gG~vD~ilmri~di~ls~P~lll~i~l~~~lg~~~~~iiial~i~~W~~~A  164 (289)
T COG1173          85 ARISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRITDIFLAFPSLLLAILLVAILGPGLLNLILALALVGWPGYA  164 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999880761999999999999976599999999999772489899999999439999


Q ss_pred             HHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHH
Q ss_conf             9958874129-98999999960788201012236886267999999999999999999999970------5880499999
Q gi|254780341|r  172 RLTRLGIIST-PPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVG------SNGLGVPVLR  244 (281)
Q Consensus       172 ~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig------~~GLG~~i~~  244 (281)
                      |.+..-..++ ++|++|+||.+|+|++++++|..+|...|.++......+..+.....--++.|      ...+|.++.+
T Consensus       165 R~vR~~vl~~k~~eyV~AAr~~G~~~~~Ii~rhIlPn~~~~iiv~~~l~~~~aIl~ea~LSFLGLG~~pp~pswG~ml~~  244 (289)
T COG1173         165 RIVRGQVLSLREREYVEAARALGASTLRIIFRHILPNVLPPLIVLATLDIGGAILAEAGLSFLGLGVQPPTPSWGTMLAE  244 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             99999999987768999999849992012498862302899999999999999999999999068899899989999999


Q ss_pred             HHH---HHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCC
Q ss_conf             997---4078989999999999999----99999998742105
Q gi|254780341|r  245 ALN---TVDIGRGFESGLCIVILAI----ILDRLFSIPDPRDR  280 (281)
Q Consensus       245 a~~---~~~~~~~~~~~l~Iv~lai----~lDri~~~~~~r~~  280 (281)
                      +++   ..+.-..+..+++|+++.+    +-|.+-+..+.|.|
T Consensus       245 ~~~~~~~~~~w~~l~Pgl~i~l~vl~fnllgdgLrd~~dpr~~  287 (289)
T COG1173         245 GRNYLLTGAWWLVLFPGLAILLTVLAFNLLGDGLRDALDPRLR  287 (289)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC
T ss_conf             9998870485999998999999999999999889987480102


No 44 
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=99.74  E-value=5.5e-17  Score=120.76  Aligned_cols=187  Identities=21%  Similarity=0.239  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHH-CCCCHHHHH--H-HHHHHHHHH
Q ss_conf             999999999997887666776421012112320235034544201202101100000-021017889--9-999988789
Q gi|254780341|r   94 TETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVL-FGLGMVPGI--V-ATIVFSIPT  169 (281)
Q Consensus        94 ~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~-fG~g~~~~i--~-a~~i~~~~p  169 (281)
                      +.|+.++.+=..++.++++++|+..+.++++++...|..+++.+.|+-.|.|.+.+. .+.+..+-+  . ..++.++..
T Consensus       320 l~~~lRV~vilals~~i~i~lGy~i~~~p~~e~i~~P~~Q~LaafPa~~~FPl~~aa~~~~i~~~ei~l~pL~~~gT~~Y  399 (523)
T COG4986         320 LYDYLRVVVILALSFLISIFLGYSIALRPRVEGIGQPLIQFLAAFPAPIYFPLLFAAIKTFILTPEIWLSPLGFIGTFYY  399 (523)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             88999999999999999998657403151165541279999871892378889999999986074577746777667899


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHH
Q ss_conf             99995887412998999999960788201012236886267999999999999999999999970-------58804999
Q gi|254780341|r  170 SVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVG-------SNGLGVPV  242 (281)
Q Consensus       170 i~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig-------~~GLG~~i  242 (281)
                      +..|+..|.+++|.|+.|++|.++...|..++++.+|...|++++|+-.+..-+|...+++|...       +.|||.++
T Consensus       400 i~~n~iaG~ka~P~e~~e~akny~l~~w~k~r~iilP~tFPYlitG~~tt~ggaWna~iV~Ey~s~g~~~~v~~GlgkyI  479 (523)
T COG4986         400 IFYNVIAGAKALPVEYFEAAKNYNLGGWAKWRRIILPGTFPYLITGLSTTIGGAWNALIVGEYWSWGHTLLVAHGLGKYI  479 (523)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHEEEECCCCCHHHHHHHHHHHH
T ss_conf             99999987652778999999970835599888875364229998747753046344002022002674266563279899


Q ss_pred             HHHHHHHCHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHCC
Q ss_conf             9999740789899999999999----999-9999998742105
Q gi|254780341|r  243 LRALNTVDIGRGFESGLCIVIL----AII-LDRLFSIPDPRDR  280 (281)
Q Consensus       243 ~~a~~~~~~~~~~~~~l~Iv~l----ai~-lDri~~~~~~r~~  280 (281)
                      -.+.+..|+++...+.+...++    .+. -.|+...++||.+
T Consensus       480 a~aT~aGd~pr~~~g~~im~i~Vvv~n~~~wrRl~d~A~kr~~  522 (523)
T COG4986         480 AVATAAGDIPRALWGSFIMGIVVVVYNILFWRRLMDLARKRYV  522 (523)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9998568830688865655045557579999999999998722


No 45 
>PRK11123 arginine transporter permease subunit ArtQ; Provisional
Probab=99.74  E-value=8.3e-16  Score=113.66  Aligned_cols=187  Identities=14%  Similarity=0.191  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC----------------
Q ss_conf             9999999999999978876667764210-12112320235034544201202101100000021----------------
Q gi|254780341|r   91 QETTETLSLVLVSTFISMFIGVPLGVLA-AWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL----------------  153 (281)
Q Consensus        91 ~~~~~Tl~~~~~~~~ia~~igiplGi~~-~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~----------------  153 (281)
                      +-...|+.....+..++.++|+.+++.- .+++..+....-++++++.+|.++.+.  ...||.                
T Consensus         9 ~G~~~Tl~l~~~a~~~g~~lG~~la~~r~s~~~~l~~~~~~yv~~~RgtP~lv~l~--~~yfg~p~l~~~l~~~~~~~~~   86 (238)
T PRK11123          9 SAAGMTVGLAVCALIVGLALAMFFAVWESAKWRPVAWPGTALVTLLRGLPEILVVL--FIYFGSSQLLLTLSDGFTLNLG   86 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHHCCCCH
T ss_conf             99999999999999999999999999998886889999999999991675999999--9999528988763100000100


Q ss_pred             ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ----------------0178899999988789999958874129989999999607882010122368862679999999
Q gi|254780341|r  154 ----------------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLT  217 (281)
Q Consensus       154 ----------------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~  217 (281)
                                      ...+++++..++.-....-....|+++||+...|||+++|.|++|+++||.+|+|++..+-++-
T Consensus        87 ~~~~~~~~~~~~~~~~~f~~avial~l~~~Ay~aEi~R~gi~sVp~GQ~EAa~alGms~~q~~r~IilPQa~r~~lP~l~  166 (238)
T PRK11123         87 FVQIPVQMDIENFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLG  166 (238)
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             11101001213456469999999999999999999999999839999999999849899999999998999999973899


Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999705880499999-9974078989999999-9999999999999874210
Q gi|254780341|r  218 QTIMLSLSMVVVTALVGSNGLGVPVLR-ALNTVDIGRGFESGLC-IVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       218 ~~~~~~l~~vvia~~ig~~GLG~~i~~-a~~~~~~~~~~~~~l~-Iv~lai~lDri~~~~~~r~  279 (281)
                      .....-+.....+..+|...+=+.-.. +.++++.-+.+..... =.++...+.++.++.|||-
T Consensus       167 n~~i~liK~TSL~s~Igv~El~~~a~~i~~~t~~~~e~y~~~a~iYlii~~~l~~~~~~lEkR~  230 (238)
T PRK11123        167 NQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIDLRF  230 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999984999999899999999999971345699999999999999999999999999985


No 46 
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional
Probab=99.74  E-value=7.9e-16  Score=113.76  Aligned_cols=185  Identities=16%  Similarity=0.238  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCC---------------
Q ss_conf             999999999999997887666776421-0121123202350345442012021011000000210---------------
Q gi|254780341|r   91 QETTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG---------------  154 (281)
Q Consensus        91 ~~~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g---------------  154 (281)
                      +-...|+...+.+..++.++|+.++.. ..+++..+....-+.++++++|.++.+.  ...||.+               
T Consensus        10 ~G~~~Tl~l~~~s~~~~~~lG~~la~~r~~~~~~l~~~~~~yv~~~Rg~PlLv~lf--~~yfg~~~~~~l~~~~~~~~~~   87 (222)
T PRK11122         10 KGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIF--LIYYGPGQFPWLQEYPWLWHLL   87 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHHHHHHCCCHHHHHC
T ss_conf             99999999999999999999999999998797789999999999995646999999--9998148887775030353202


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---17889999998878999995887412998999999960788201012236886267999999999999999999999
Q gi|254780341|r  155 ---MVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTA  231 (281)
Q Consensus       155 ---~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~  231 (281)
                         ..+++++..++.-....-....|+++||++..|||+++|.|+||++ ||.+|+|+...+-++-.-....+.....++
T Consensus        88 ~~~~~~~viaL~l~~~Ay~aEi~R~gi~sV~~GQ~EAA~slGls~~q~~-rIilPQa~r~~lP~l~n~~i~liK~TsL~s  166 (222)
T PRK11122         88 SQPWLCAMLALALNSAAYSTQLFYGAIRAIPEGQWQSCSALGMSKKQTL-AILLPYAFKRALSSYSNEVVLVFKGTSLAY  166 (222)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2599999999999999999999999996099879999998698999999-989999999986688999999999849999


Q ss_pred             HHCCCCHHHHHHHH-HHHHCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCC
Q ss_conf             97058804999999-9740789899999999--9999999999998742105
Q gi|254780341|r  232 LVGSNGLGVPVLRA-LNTVDIGRGFESGLCI--VILAIILDRLFSIPDPRDR  280 (281)
Q Consensus       232 ~ig~~GLG~~i~~a-~~~~~~~~~~~~~l~I--v~lai~lDri~~~~~~r~~  280 (281)
                      .+|...+=+.-..- .++++. ..+.. .++  .++...++++.++.|||.+
T Consensus       167 ~Igv~El~~~a~~i~~~t~~~-~~y~~-~a~~Y~~i~~~~~~~~~~lErR~~  216 (222)
T PRK11122        167 TITLMDVMGYSQLLYGRTYDV-MVFGA-AGIIYLVVNGLLTLLMRLIERKAL  216 (222)
T ss_pred             HHHHHHHHHHHHHHHHCCCHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998999999999999741609-99999-999999999999999999999876


No 47 
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=99.73  E-value=5e-16  Score=114.99  Aligned_cols=190  Identities=22%  Similarity=0.245  Sum_probs=150.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC--------C-------
Q ss_conf             99999999999997887666776421012--112320235034544201202101100000021--------0-------
Q gi|254780341|r   92 ETTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL--------G-------  154 (281)
Q Consensus        92 ~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~--------g-------  154 (281)
                      ..-.|+.+...+..++..+|+++|++++.  .++.++.+..+..+..++|+|.....++.+|+.        |       
T Consensus        95 ~lp~Tl~L~~~a~il~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~lallli~if~~~l~~~P~~G~~~~~~~  174 (339)
T PRK10914         95 RFKATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVF  174 (339)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             27258999999999999999999999998527511136788898612306999999999999999574777676765312


Q ss_pred             -------------------H-----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             -------------------1-----------7889999998878999995887412-99899999996078820101223
Q gi|254780341|r  155 -------------------M-----------VPGIVATIVFSIPTSVRLTRLGIIS-TPPILKEAACAFGATPFQVFRKV  203 (281)
Q Consensus       155 -------------------~-----------~~~i~a~~i~~~~pi~~~t~~gl~~-v~~~~~eaa~~~Gas~~q~l~~V  203 (281)
                                         +           .--+++..+.......|.+.+.+.+ .++++++.||+-|.+++++++|.
T Consensus       175 ~~~~~p~~g~~~~~~~~~g~~~~~~~~l~hliLP~l~L~l~~~a~~~r~~R~~~~~~l~~dyV~~ArakGl~~~~i~~~h  254 (339)
T PRK10914        175 LDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVH  254 (339)
T ss_pred             CCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHH
T ss_conf             46666655410011142045113788999999999999999999999999999999983499999998594933140498


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q ss_conf             68862679999999999999999999999-7058804999999974078989999999999----999999999987421
Q gi|254780341|r  204 ELPFAIPQIVASLTQTIMLSLSMVVVTAL-VGSNGLGVPVLRALNTVDIGRGFESGLCIVI----LAIILDRLFSIPDPR  278 (281)
Q Consensus       204 ~lP~a~P~i~~Gi~~~~~~~l~~vvia~~-ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~----lai~lDri~~~~~~r  278 (281)
                      .++.|++.+.+.+-..+..-++++++-|. .+-+|+|++..++.++.|++......+.+.+    .-++.|-+....+.|
T Consensus       255 ~lrnal~P~it~~g~~~~~ll~GsvivE~vF~~pGiG~l~~~Ai~~rD~pvi~g~~l~~~~~~i~~nli~Dil~~~lDPR  334 (339)
T PRK10914        255 ALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR  334 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             39860998999999999999976999869867757699999999835889999999999999999999999999862840


Q ss_pred             CCC
Q ss_conf             059
Q gi|254780341|r  279 DRI  281 (281)
Q Consensus       279 ~~~  281 (281)
                      .|.
T Consensus       335 iR~  337 (339)
T PRK10914        335 IRH  337 (339)
T ss_pred             CCC
T ss_conf             478


No 48 
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.73  E-value=8.9e-16  Score=113.47  Aligned_cols=193  Identities=25%  Similarity=0.308  Sum_probs=153.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC--------CHH--
Q ss_conf             4499999999999999788766677642101--2112320235034544201202101100000021--------017--
Q gi|254780341|r   89 YWQETTETLSLVLVSTFISMFIGVPLGVLAA--WYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL--------GMV--  156 (281)
Q Consensus        89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~--~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~--------g~~--  156 (281)
                      ..+..-.|+.+...+..++.++|+|+|+.++  ++++.++.++...-+..++|+|.....++.+|+.        |..  
T Consensus        91 I~~~lp~Tl~L~~~a~iis~~lgi~LG~~aa~~~~~~~D~~~~~~~~~~~siP~F~~~~lli~~f~~~l~~~P~~g~~~~  170 (317)
T COG0601          91 ILERLPATLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWLGLLLILLFSVKLGWLPVGGRGSA  170 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99884999999999999999999999999994489759999999999999602999999999999999676898887886


Q ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --------------8899999988789999958874129-9899999996078820101223688626799999999999
Q gi|254780341|r  157 --------------PGIVATIVFSIPTSVRLTRLGIIST-PPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIM  221 (281)
Q Consensus       157 --------------~~i~a~~i~~~~pi~~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~  221 (281)
                                    --.++..+..+.-..|.+.+.+.++ ++|+++.||+-|.|++++++|..++.|+..+++..-..+.
T Consensus       171 ~~~~~~~~~~~h~iLP~~~L~~~~~a~~~r~~R~~~~e~l~~dyV~~AraKGl~~~~i~~kH~lrNa~iP~vt~~~~~~~  250 (317)
T COG0601         171 GSWDSFLDALKHLILPALTLGLVSLAGIARLTRSSMLEVLNQDYVRTARAKGLSERRILFKHALRNALLPVITVLGLQLG  250 (317)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             51567999999999999999999999999999999999986689999998799925103986337648889999999999


Q ss_pred             HHHHHHHHHHH-HCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Q ss_conf             99999999999-70588049999999740789899999999999----99999999987421059
Q gi|254780341|r  222 LSLSMVVVTAL-VGSNGLGVPVLRALNTVDIGRGFESGLCIVIL----AIILDRLFSIPDPRDRI  281 (281)
Q Consensus       222 ~~l~~vvia~~-ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~l----ai~lDri~~~~~~r~~~  281 (281)
                      ..++++++.|- .+=+|+|++..+|.++.|++..+...+.+.++    -.+.|-+-...+.|.|.
T Consensus       251 ~ll~GavivE~iF~~pGiG~l~~~Ai~~~D~p~i~g~~~~~~~~~i~~nli~Dily~~lDPRir~  315 (317)
T COG0601         251 GLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLVIALLVILGNLLVDILYALLDPRIRL  315 (317)
T ss_pred             HHHHCHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99846878735408778499999999824849999999999999999999999999964975668


No 49 
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=99.73  E-value=1.4e-17  Score=124.23  Aligned_cols=175  Identities=22%  Similarity=0.267  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHC----C--CC-HHHHHHHHHH
Q ss_conf             999999999999978876667764210121123202350345442012021011000000----2--10-1788999999
Q gi|254780341|r   92 ETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLF----G--LG-MVPGIVATIV  164 (281)
Q Consensus        92 ~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~f----G--~g-~~~~i~a~~i  164 (281)
                      ..+.|..+++.+..++++.|..++.++.||++.+++.-|.+|++|++|.+.+++..+.+|    |  .| +.++.++++.
T Consensus        10 a~LaT~gRm~~ai~iSi~~~~~lAy~A~Ksk~~E~i~ip~ldVlqSVPVlgFfpi~l~~Fv~lfpG~lGvElAa~FlvFT   89 (523)
T COG4986          10 ALLATAGRMLLAILISILTGWFLAYAAIKSKRFENIYIPVLDVLQSVPVLGFFPIVLIFFVYLFPGPLGVELAADFLVFT   89 (523)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999985205676130499887408512010535544434347500389999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HC----
Q ss_conf             88789999958874129989999999607882010122368862679999999999999999----999999--70----
Q gi|254780341|r  165 FSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSM----VVVTAL--VG----  234 (281)
Q Consensus       165 ~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~----vvia~~--ig----  234 (281)
                      ...+.+....++++|.||+|+.|+|+.++.|.|++++|+++|.|+|.|...    ++++++.    +++.|.  +|    
T Consensus        90 s~aWNi~fs~YQsFkTvP~dl~Eva~~yrls~~~r~~rlyIPfa~Pgi~~N----l~~S~s~g~FfItaSEvitvG~~t~  165 (523)
T COG4986          90 SVAWNIWFSEYQSFKTVPSDLLEVARNYRLSFLLRMARLYIPFAMPGIAAN----LMPSMSDGFFFITASEVITVGIHTY  165 (523)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHH----CCHHHCCCEEEEEEEEEEEECCEEE
T ss_conf             999999999999872387899999987265899987870543112567984----6830228389999767899635047


Q ss_pred             -CCCHHHHHHHHHHHHCHHHHH--HHHHHHHHHHHHHHH
Q ss_conf             -588049999999740789899--999999999999999
Q gi|254780341|r  235 -SNGLGVPVLRALNTVDIGRGF--ESGLCIVILAIILDR  270 (281)
Q Consensus       235 -~~GLG~~i~~a~~~~~~~~~~--~~~l~Iv~lai~lDr  270 (281)
                       ..|+|.++-......|+....  .+.+++++..+..|.
T Consensus       166 ~lfGIGS~l~~~~a~~~~~~~~ig~ai~A~~i~il~y~l  204 (523)
T COG4986         166 RLFGIGSLLDELLAIGQYNLAYIGLAILAMAIGILLYDL  204 (523)
T ss_pred             EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             704638899988740017889999999999999999999


No 50 
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.73  E-value=9.2e-16  Score=113.38  Aligned_cols=187  Identities=24%  Similarity=0.371  Sum_probs=140.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHCCCC----------HH
Q ss_conf             844999999999999997887666776421012112-3202350345442012021011000000210----------17
Q gi|254780341|r   88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLFGLG----------MV  156 (281)
Q Consensus        88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g----------~~  156 (281)
                      +.|+...+|+.....+..+++++|+++++...|.+. .++.++-.......+|..+...-.+..|..-          ..
T Consensus       330 ~~~~a~~nSl~~a~~aa~l~~~~~l~~a~~~~r~~~~~~~~~~~l~~l~~avPG~Vla~g~l~~~~~~~~~~~~~~~t~~  409 (540)
T COG1178         330 QFWQALLNSLLLALAAALLAVVLALLLAYAVRRLRSRLSRLLERLSMLPLAVPGVVLALGLLLLFRAPDGLLYQPLYTLL  409 (540)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHCCCHHHHH
T ss_conf             89999999999999999999999999999999732348899999988786336999999999998512200003056899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf             8899999988789999958874129989999999607882010122368862679999999999999999999999705-
Q gi|254780341|r  157 PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS-  235 (281)
Q Consensus       157 ~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~-  235 (281)
                      -.+++-++..+|...|....+++++|+++.|+++++|+++||++++|.+|...|++.+|.-.....+.......-+.+. 
T Consensus       410 ilv~a~~~~~~p~a~r~~~a~l~qi~~~leeaa~sLG~~~~~~~~~I~lPll~p~l~~a~~l~F~~s~~Elsat~lL~~~  489 (540)
T COG1178         410 ILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSIGELSATLLLGSP  489 (540)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCC
T ss_conf             99999999998899999999998779749999988599787798998787305889999999999997553768786389


Q ss_pred             --CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_conf             --88049999999740789899999999999999----9999998
Q gi|254780341|r  236 --NGLGVPVLRALNTVDIGRGFESGLCIVILAII----LDRLFSI  274 (281)
Q Consensus       236 --~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~----lDri~~~  274 (281)
                        +-++.++++..+..+++.+-+..+.++++.++    +||..+.
T Consensus       490 ~~~TL~~~iy~~~~~~~~~~Aaa~a~il~~~~~~~~~~~~~~~~~  534 (540)
T COG1178         490 GTRTLTVYIYNLLSDGRYGDAAALALILLVVSLLLFLLLDRLGEG  534 (540)
T ss_pred             CCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             961099999998036116888999999999999999999996402


No 51 
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=99.73  E-value=1.3e-15  Score=112.45  Aligned_cols=193  Identities=23%  Similarity=0.249  Sum_probs=142.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCCHHHHH----HHHCCC--C-HHHHH
Q ss_conf             844999999999999997887666776421-012112320235034544201202101100----000021--0-17889
Q gi|254780341|r   88 GYWQETTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFVYLIPA----LVLFGL--G-MVPGI  159 (281)
Q Consensus        88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~----i~~fG~--g-~~~~i  159 (281)
                      .+|+-...|+.....+..++.++|+.+|+. .++++..+....-+++++|..|-++-+...    ...+|+  + ..+++
T Consensus        17 ~ll~G~~~Tl~ls~~~~~~g~vlG~~la~~r~s~~~~l~~~~~~Yv~~~RgtPlLvqlf~~yfg~lp~~gi~~~~~~aav   96 (222)
T COG0765          17 FLLKGLLVTLLLTLLSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIFRGTPLLVQLFFIYFGLLPLLGIELDPFTAAV   96 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             99999999999999999999999999999997784789999999887761741999999999985798446777999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             99999887899999588741299899999996078820101223688626799999999999999999999997058804
Q gi|254780341|r  160 VATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG  239 (281)
Q Consensus       160 ~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG  239 (281)
                      ++..+++-..+.-....|+++||+...|||+++|.|++|++++|.+|+|+..++-.+-.-...-+....+++.+|...|=
T Consensus        97 ial~l~~~AY~aEi~R~GI~sV~kGQ~EAA~aLGls~~q~~r~IIlPQAlr~~lP~l~n~~i~liK~TSl~svIgv~EL~  176 (222)
T COG0765          97 IALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQTMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIGVVELT  176 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999996188868999998599986686630023569986517689999999982999999899999


Q ss_pred             HHHHH-HHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999-997407898999-999999999999999998742105
Q gi|254780341|r  240 VPVLR-ALNTVDIGRGFE-SGLCIVILAIILDRLFSIPDPRDR  280 (281)
Q Consensus       240 ~~i~~-a~~~~~~~~~~~-~~l~Iv~lai~lDri~~~~~~r~~  280 (281)
                      +.-.. +.++++.-+.+. +++.=.++...+.++.++.|||.+
T Consensus       177 ~~a~~i~~~t~~~~e~~~~~a~iY~~l~~~ls~~~~~lErr~~  219 (222)
T COG0765         177 RAAQIIAARTFRPFEVYLLAALIYLILCLPLSLLSRRLERRLA  219 (222)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999866517999999999999999999999999998852


No 52 
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional
Probab=99.73  E-value=1.1e-15  Score=112.96  Aligned_cols=188  Identities=23%  Similarity=0.303  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999978876667764210121-12320235034544201202101100000021017889999998878999
Q gi|254780341|r   93 TTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSV  171 (281)
Q Consensus        93 ~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi~  171 (281)
                      +-.|+...+.++.++.++|+.+|...|.. +++++.++-+.|++.++|++...+.+...+|.+....++++.+...|...
T Consensus        93 ~r~sL~i~l~~~~i~~~iG~~lG~~aGy~gG~~D~il~ri~Dv~~aiP~lll~i~l~~~~g~~~~~~il~i~l~~w~~~a  172 (296)
T PRK09881         93 SQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYV  172 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999988881760766556777630158605777888765167516888999998799999


Q ss_pred             HHHHH-HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHHH
Q ss_conf             99588-74129989999999607882010122368862679999999999999999999999705------880499999
Q gi|254780341|r  172 RLTRL-GIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS------NGLGVPVLR  244 (281)
Q Consensus       172 ~~t~~-gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~------~GLG~~i~~  244 (281)
                      |.+.. .++.-++|++|+||++|+|+|++++|..+|+..|.++.-.-..+..+.....--+++|-      ...|.++.+
T Consensus       173 R~vR~~~l~i~~~~yV~AAr~~G~s~~~Ii~rhiLPni~~~liv~~~~~~~~aIl~ea~LsFLGlG~~pp~~sWG~mi~~  252 (296)
T PRK09881        173 RLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVAN  252 (296)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf             99999999996349999999839886785414276661889999999999999999999999037899999859999999


Q ss_pred             HHHHHC--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHCC
Q ss_conf             997407--8989999999999999----99999998742105
Q gi|254780341|r  245 ALNTVD--IGRGFESGLCIVILAI----ILDRLFSIPDPRDR  280 (281)
Q Consensus       245 a~~~~~--~~~~~~~~l~Iv~lai----~lDri~~~~~~r~~  280 (281)
                      +.+...  .-..+..++++.++.+    +-|.+-+..+.|.|
T Consensus       253 ~~~~~~~~~w~~~~Pg~~i~l~vl~~nllgdgLrd~ldPr~r  294 (296)
T PRK09881        253 GRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAG  294 (296)
T ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999998772999999999999999999999999998196557


No 53 
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667   Bacterial binding protein-dependent transport systems ,  are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown ,  that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems  to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,   This entry describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulphate ABC transporter; GO: 0015563 uptake transmembrane transporter activity, 0006810 transport, 0016020 membrane.
Probab=99.72  E-value=3.1e-18  Score=128.28  Aligned_cols=184  Identities=20%  Similarity=0.256  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC-----------------CHH
Q ss_conf             9999999999788766677642101211-2320235034544201202101100000021-----------------017
Q gi|254780341|r   95 ETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL-----------------GMV  156 (281)
Q Consensus        95 ~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~-----------------g~~  156 (281)
                      .|+.+++++..+=.+.|+..+..+.|++ +.++.++.++|+--++|+-|.-.-++.++|-                 +..
T Consensus        73 lT~~~aliav~lN~vFG~~~AWvLtR~~FPGr~lLda~~DLPFAlspvVAGL~l~llYg~~Gw~G~~~~~fgiqI~F~~~  152 (280)
T TIGR00969        73 LTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWP  152 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHEEEEEECCCCCCCCHHHHCCCEEEEECC
T ss_conf             99999999999999999999999971269825899998621334250675330004535778511323017868998412


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_conf             889999998878999995887412998999999960788201012236886267999999999999999----9999999
Q gi|254780341|r  157 PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS----MVVVTAL  232 (281)
Q Consensus       157 ~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~----~vvia~~  232 (281)
                      ...+|.+-.++|.++|...==+++..+|..|||.++|||+||++|||.||.-.|+++.|+-++..-|+.    .++|++=
T Consensus       153 G~~lAmiFvs~PFVvRev~PVL~Elg~e~EEAA~tLGA~~WQtFwRV~LP~i~w~llyGv~Lt~aRAlGEFGaV~~vSgn  232 (280)
T TIGR00969       153 GVALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGN  232 (280)
T ss_pred             CEEEEEEEECCCCEEEEECCCHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf             14666534216804543100134138557899986289983026787668872678886787655654301107899446


Q ss_pred             H-CC-CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7-05-8804999999974078989999999999999999999987421
Q gi|254780341|r  233 V-GS-NGLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPR  278 (281)
Q Consensus       233 i-g~-~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r  278 (281)
                      + |. .=+--+|.+..+++|+...++++..+..++++.=-+.+..|.|
T Consensus       233 i~gkt~~lplli~~~l~~Yd~~gA~~ia~vL~l~slv~L~~~~~Lq~R  280 (280)
T TIGR00969       233 IPGKTLTLPLLIFERLEQYDYPGAYVIAAVLLLVSLVTLFLINLLQAR  280 (280)
T ss_pred             CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             886312015664447660360789999999999999999999985039


No 54 
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents a clade of ABC porter genes with relatively weak homology compared to its neighbour clades, the molybdate (IPR006229 from INTERPRO) and sulphate (IPR005667 from INTERPRO) porters. Neighbour-Joining, PAM-distance phylogenetic trees support the separation of these clades in this way. Included in this group are the NifC genes of Clostridium pasteurianum  and Pasteurella multocida, which are involved in the biosynthesis and/or control of nitrogenase. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within this group are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulphate porter. There is presently no experimental evidence to support annotations with this degree of specificity.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=99.72  E-value=5.4e-16  Score=114.75  Aligned_cols=175  Identities=25%  Similarity=0.423  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC-CH------------
Q ss_conf             99999999999999788766677642101211--2320235034544201202101100000021-01------------
Q gi|254780341|r   91 QETTETLSLVLVSTFISMFIGVPLGVLAAWYP--RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL-GM------------  155 (281)
Q Consensus        91 ~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~--~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~-g~------------  155 (281)
                      +....++.-...+++++..+|+|.++.++|.+  +..|.+++++++--.+|+.|--+-+...||- |.            
T Consensus        21 ~al~lSl~Ts~~sl~l~~~~g~P~A~~lar~~n~pl~~~l~~ll~LP~VlPPlV~G~aLLl~FG~~g~lG~~l~~aGi~~  100 (226)
T TIGR01581        21 KALRLSLLTSLASLLLAVVLGIPTAYVLARVRNFPLKKLLDTLLDLPLVLPPLVAGIALLLLFGRLGLLGPYLEAAGIQV  100 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCHHH
T ss_conf             99999999999999999999988999998875068547789998665424665888999999720212689998644167


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q ss_conf             ----7889999998878999995887412998999999960788201012236886267999999999999999----99
Q gi|254780341|r  156 ----VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS----MV  227 (281)
Q Consensus       156 ----~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~----~v  227 (281)
                          .+.++|-.-.+.|..+|+-+.+.+++|+|+.|+||++|+++.|+++||.+|.+.|++++|.=.+..-|+.    ..
T Consensus       101 ~Fs~~gvvlAQ~FVa~p~~vr~~r~~f~~v~~~ye~va~~lG~g~~~t~~~v~lPl~~~~ll~G~vLafaRalGEFGATL  180 (226)
T TIGR01581       101 IFSTLGVVLAQTFVASPYLVRVARSTFESVDPDYEDVARSLGAGPLETFRKVTLPLARPGLLAGLVLAFARALGEFGATL  180 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88889999999999999999999976730383489999880787226788875775336888879999999756567899


Q ss_pred             HHH-HHHC-CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf             999-9970-5880499999997407898999999999999
Q gi|254780341|r  228 VVT-ALVG-SNGLGVPVLRALNTVDIGRGFESGLCIVILA  265 (281)
Q Consensus       228 via-~~ig-~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~la  265 (281)
                      +.| +..| ++-+=-.++.+.+.-|.+-.....+...+++
T Consensus       181 ~~AG~~~g~TrTlPl~iY~~~~~d~~~~aV~~a~~Ll~ia  220 (226)
T TIGR01581       181 MFAGSLQGKTRTLPLAIYLNIESDDIEAAVALAVLLLVIA  220 (226)
T ss_pred             HHHCCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             9843677753012788864574177327999999999999


No 55 
>PRK10913 dipeptide transporter; Provisional
Probab=99.72  E-value=1.8e-15  Score=111.56  Aligned_cols=188  Identities=19%  Similarity=0.267  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999978876667764210121-12320235034544201202101100000021017889999998878999
Q gi|254780341|r   93 TTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSV  171 (281)
Q Consensus        93 ~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi~  171 (281)
                      +-.|+...+.++.++.++|+.+|...|.+ +++++.++.+.|++.++|++..++.+...+|.+....++++.+.+.|...
T Consensus        98 ~r~Sl~ial~~~~i~~~iG~~iG~iaGy~gG~vD~~i~r~~di~~aiP~lll~l~l~~~~g~~~~~~~lal~~~~w~~~a  177 (300)
T PRK10913         98 ARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYV  177 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999803884078887776666068848776875530487468999999999899999


Q ss_pred             HHHHHHHHC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHHH
Q ss_conf             995887412-9989999999607882010122368862679999999999999999999999705------880499999
Q gi|254780341|r  172 RLTRLGIIS-TPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS------NGLGVPVLR  244 (281)
Q Consensus       172 ~~t~~gl~~-v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~------~GLG~~i~~  244 (281)
                      |.+..-..+ -++|++|+||.+|+|+|++++|..+|+.+|.++.-....+..+.....--+++|-      ...|.++.+
T Consensus       178 R~vR~~vl~~~~~~yV~AAr~~G~s~~rIi~~hIlPnv~~~iiv~~~l~~~~aIl~ea~LsFLGlG~~pp~~sWG~ml~~  257 (300)
T PRK10913        178 RLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSD  257 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             99999999986158999999849997478643342665889999999999999999999999247899998839999999


Q ss_pred             HHHHHC--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHCC
Q ss_conf             997407--898999999999999----999999998742105
Q gi|254780341|r  245 ALNTVD--IGRGFESGLCIVILA----IILDRLFSIPDPRDR  280 (281)
Q Consensus       245 a~~~~~--~~~~~~~~l~Iv~la----i~lDri~~~~~~r~~  280 (281)
                      +++..+  .-..+..+++++++.    ++-|.+-+..+.|.|
T Consensus       258 ~~~~~~~~pw~~~~Pg~~i~l~vl~~nllgdgLrdaldPrlr  299 (300)
T PRK10913        258 VLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLK  299 (300)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999998483999999999999999999999999987191017


No 56 
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=99.71  E-value=8.2e-15  Score=107.66  Aligned_cols=192  Identities=19%  Similarity=0.329  Sum_probs=141.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCC-----------
Q ss_conf             13484499999999999999788766677642101211-232023503454420120210110000002-----------
Q gi|254780341|r   85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG-----------  152 (281)
Q Consensus        85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG-----------  152 (281)
                      .+..+|+-.-.|+.....++++++++|+|++..+.|++ +.++.++-.+..--.+|+++...-.+.+||           
T Consensus        48 ~d~~~~~~~~~t~~~a~~st~ls~~lg~~~A~~l~r~~f~gr~~l~~l~~lp~~~P~~v~a~~~~~~~g~~G~l~~~l~~  127 (536)
T PRK09433         48 QDSYLWHVVRFSFWQAFLSALLSVLLAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLASLLQS  127 (536)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             68889999999999999999999999999999999558734999999999998769999999999998216449999998


Q ss_pred             ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---------10178899999988789999958874129989999999607882010122368862679999999999999
Q gi|254780341|r  153 ---------LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS  223 (281)
Q Consensus       153 ---------~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~  223 (281)
                               +|....+++.+.+.+|...+....+++++|+++.|+|+++|+|+||.++||++|...|.+.+|.-...+.|
T Consensus       128 ~g~~~~~~iyg~~gil~a~~~~~~P~~~~~~~~~l~~i~~~~~e~A~~LG~~~~~~f~~v~lP~~~pai~~~~~LVF~~~  207 (536)
T PRK09433        128 LGLEWPFSIYGLQGILLAHVFFNLPLATRLLLQSLESIPSEQRQLAAQLGMRGWQFFRLVEWPWLRRQLPPVAALIFMLC  207 (536)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             28877864012999999999999999999999999819999999998759898688886348988788999999999999


Q ss_pred             HHHHHHHHHHCCC----CHHHHHHHHHH-HHCHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_conf             9999999997058----80499999997-407898999999999--9999999999987421
Q gi|254780341|r  224 LSMVVVTALVGSN----GLGVPVLRALN-TVDIGRGFESGLCIV--ILAIILDRLFSIPDPR  278 (281)
Q Consensus       224 l~~vvia~~ig~~----GLG~~i~~a~~-~~~~~~~~~~~l~Iv--~lai~lDri~~~~~~r  278 (281)
                      ++.--+....|++    -+-..++++.+ .+|.+.  ++.++++  ++.+.+--+.++.++|
T Consensus       208 ~~sF~~vl~LGGgp~~~Tlev~IYq~~~~~~D~~~--Aa~La~i~l~i~~~l~~l~~~~~~~  267 (536)
T PRK09433        208 FTSFATVLTLGGGPKATTIELAIYQALSFDFDLAR--AALLALLQLVLCLLLVLLSQRLSKA  267 (536)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99888999955886403689999999986479999--9999999999999999999998224


No 57 
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=99.70  E-value=5e-15  Score=108.94  Aligned_cols=189  Identities=22%  Similarity=0.181  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             999999999999978876667764210121-1232023503454420120210110000002101788999999887899
Q gi|254780341|r   92 ETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTS  170 (281)
Q Consensus        92 ~~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi  170 (281)
                      -+-.|+...+.++.++..+|+.+|+..+.+ ++.++.++.+.|.+.++|++...+.+...+|.|....++++.+...+..
T Consensus        65 G~r~sl~i~l~~~~~~~~iG~~lG~~ag~~gg~~d~~~~~~~d~~~~iP~lll~i~l~~~~g~~~~~~il~l~l~~w~~~  144 (272)
T PRK10417         65 GTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWY  144 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999997187612477777889862862877888886448972589999999889999


Q ss_pred             HHHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHH
Q ss_conf             99958874129-989999999607882010122368862679999999999999999999999705------88049999
Q gi|254780341|r  171 VRLTRLGIIST-PPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS------NGLGVPVL  243 (281)
Q Consensus       171 ~~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~------~GLG~~i~  243 (281)
                      .|.+..-.+++ ++|++|+||++|+|++++++|..+|...|.++.-.-..+..+.....--+++|-      ...|.++.
T Consensus       145 ar~iR~~~l~~~~~~yV~AAr~~G~s~~~I~~rhilPni~~~i~v~~~~~~~~~Il~~a~LsFLGlG~~pp~~~WG~ml~  224 (272)
T PRK10417        145 ARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLLGAVIPSLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMIN  224 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf             99999999999989999999983958778322017676378999999999999999999999904789999988999999


Q ss_pred             HHHHHHC--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHCC
Q ss_conf             9997407--898999999999999----999999998742105
Q gi|254780341|r  244 RALNTVD--IGRGFESGLCIVILA----IILDRLFSIPDPRDR  280 (281)
Q Consensus       244 ~a~~~~~--~~~~~~~~l~Iv~la----i~lDri~~~~~~r~~  280 (281)
                      ++.+...  ....+..+++++++.    ++-|.+-++.+.|.|
T Consensus       225 ~~~~~l~~~pw~~~~P~~~i~l~vl~~nllgd~Lrd~ldP~l~  267 (272)
T PRK10417        225 DARQFIWTQPLLMFWPGLALFISVMAFNLLGDALRDHLDPHLV  267 (272)
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999999784999999999999999999999999996096645


No 58 
>PRK10561 glycerol-3-phosphate transporter permease; Provisional
Probab=99.69  E-value=9.1e-15  Score=107.40  Aligned_cols=196  Identities=16%  Similarity=0.176  Sum_probs=130.0

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHH--------------
Q ss_conf             213484499999999999999788766677642101211232023503454420120210110000--------------
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALV--------------  149 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~--------------  149 (281)
                      ..+..+|+...+|+......+.++.++|++++.++.+..+.++..+.++-.-..+|+.+....-..              
T Consensus        48 ~~d~~f~~~~~ntl~~~~~~~~~~~~l~l~lA~ll~~~~~~~~~~r~~~~lP~~i~~vv~~~~w~~l~~~~~G~~n~~l~  127 (280)
T PRK10561         48 FHDSYYLDSFWTTIKFSALVTVSGLLVSLFFAALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLA  127 (280)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             87977999999999999999999999999999998610207899999999875531999999999996987108999998


Q ss_pred             HCCCCH------HHHHHHH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             002101------7889999----998878999995887412998999999960788201012236886267999999999
Q gi|254780341|r  150 LFGLGM------VPGIVAT----IVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT  219 (281)
Q Consensus       150 ~fG~g~------~~~i~a~----~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~  219 (281)
                      .+|...      ..+...+    +....|........|++++|+|+.|||+..|||+||+++||.+|...|.+..-+-.+
T Consensus       128 ~~g~~~~~~~~~~~a~~~vi~~~vW~~~g~~~li~lagL~~Ip~~l~EAA~iDGA~~~q~f~~ItlPll~p~~~~~~i~~  207 (280)
T PRK10561        128 EFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFYAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVN  207 (280)
T ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEEEHHHHHHHHHHHHHHH
T ss_conf             65777754467489999999999999989999999999857997799999976997752331230461059999999999


Q ss_pred             HHHHH-HHH-HHHHHHCC-CC-----HHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999-999-99999705-88-----049999-999740789899999999999999999999874210
Q gi|254780341|r  220 IMLSL-SMV-VVTALVGS-NG-----LGVPVL-RALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       220 ~~~~l-~~v-via~~ig~-~G-----LG~~i~-~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~  279 (281)
                      ...+. ... .+-.+-|+ +|     +.++++ .+.++.|++.+-+..+...++.+++--+..+..||+
T Consensus       208 ~i~~~~~~f~~i~~~t~GGP~~~t~~l~~~iy~~~f~~~~~g~asA~svil~~i~~~~~~i~~r~~~rk  276 (280)
T PRK10561        208 LVYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESK  276 (280)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999656888643688885288999999999998759961999999999999999999999998321


No 59 
>PRK10998 malG maltose transporter permease; Provisional
Probab=99.62  E-value=1e-13  Score=100.99  Aligned_cols=182  Identities=18%  Similarity=0.199  Sum_probs=131.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHC---C-------CCHHH
Q ss_conf             44999999999999997887666776421012112-3202350345442012021011000000---2-------10178
Q gi|254780341|r   89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLF---G-------LGMVP  157 (281)
Q Consensus        89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~f---G-------~g~~~  157 (281)
                      ++.-..+|+..+..++.+++++|.+.|+..+|.+. .++.+.-.+-....+|+.+.++|....+   |       .+...
T Consensus        81 ~~~~~~NSl~va~~~~v~~l~~~~~aaYalar~~f~g~~~l~~~~l~~~~iP~~~~~ip~~~~~~~lgl~~~~~~l~t~~  160 (296)
T PRK10998         81 VLLWLWNSVKIAGITAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTHG  160 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             89999999999999999999999999998731215558999999999999889999999999999960202201332249


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC
Q ss_conf             8999999887899999588741299899999996078820101223688626799999999999999999999997-058
Q gi|254780341|r  158 GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV-GSN  236 (281)
Q Consensus       158 ~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i-g~~  236 (281)
                      +++...+...|..+......++++|+|+.|||+..|||+||+++||.+|.+.|.+.+..=.+.+.+|.....+.++ +..
T Consensus       161 ~ii~~~~~~~~~~i~ll~~ff~~iP~el~EAA~iDGas~~~~f~~IilPl~~P~i~t~~i~~fi~~WNef~~~ll~l~~~  240 (296)
T PRK10998        161 GVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDV  240 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999999999862979899999985997777978767862599999999999999999999999990895


Q ss_pred             -----CHHHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHH
Q ss_conf             -----804999999974078989999999----9999999999
Q gi|254780341|r  237 -----GLGVPVLRALNTVDIGRGFESGLC----IVILAIILDR  270 (281)
Q Consensus       237 -----GLG~~i~~a~~~~~~~~~~~~~l~----Iv~lai~lDr  270 (281)
                           .+|-.-..+.+..|++...++.+.    ++++.+.+.|
T Consensus       241 ~~~tl~v~l~~~~~~~~~~~g~~~A~~~i~~lP~lI~f~~~qr  283 (296)
T PRK10998        241 NSYTLAVGMQQYLNPQNYLWGDFAAAAVLSALPITLVFLLAQR  283 (296)
T ss_pred             CCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4300999999986623564999999999999999999999999


No 60 
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This entry represents CysT, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysW (IPR011866 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.62  E-value=3.7e-16  Score=115.78  Aligned_cols=179  Identities=22%  Similarity=0.319  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHC-------------C----CCHH
Q ss_conf             99999999997887666776421012112-3202350345442012021011000000-------------2----1017
Q gi|254780341|r   95 ETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLF-------------G----LGMV  156 (281)
Q Consensus        95 ~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~f-------------G----~g~~  156 (281)
                      .|+...+.|..+=.++|+.++..+-|++- .+|+++-.+|+--+.|.=|.-+-+..++             |    +++.
T Consensus        54 ~sf~~Al~Aa~~N~vFG~l~AWVLVRY~FPGKri~DAlVDLPFALPTAVAGIaL~TlY~~NGWiG~~l~~lGIKvAfTpl  133 (265)
T TIGR02139        54 LSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYAPNGWIGSFLEPLGIKVAFTPL  133 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECC
T ss_conf             99999999999999999999889861247505777666233542034799999999962889401258554987887201


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf             8899999988789999958874129989999999607882010122368862679999999999999999999999----
Q gi|254780341|r  157 PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTAL----  232 (281)
Q Consensus       157 ~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~----  232 (281)
                      ..++|.+..++|.++|.+.==+++.|+|+.|||.++||||||++|||.+|.-.|.+++|.-    ++++- -++|+    
T Consensus       134 Gi~~Al~FvsLPFVVRTVQPVL~e~~~E~EEAA~~LGAS~w~tF~~vilP~L~PALLTG~A----LaFAR-a~GEYGSVi  208 (265)
T TIGR02139       134 GIVVALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWKVILPALLPALLTGFA----LAFAR-AVGEYGSVI  208 (265)
T ss_pred             CEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCHHEEEEEECCCCCCHHHHHHH----HHHHH-HHHHHHCEE
T ss_conf             0143423325882573114300058864899976516882000222331444006999789----98875-432333000


Q ss_pred             -HCCC------CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_conf             -7058------80499999997407898999999999999999---9999987421
Q gi|254780341|r  233 -VGSN------GLGVPVLRALNTVDIGRGFESGLCIVILAIIL---DRLFSIPDPR  278 (281)
Q Consensus       233 -ig~~------GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~l---Dri~~~~~~r  278 (281)
                       |.+|      =.=-+|..-++++|+..+-+-+.++.+++.++   =-+.|+..+|
T Consensus       209 FIAGN~P~~tEI~PLLI~~kLEqYDY~gATaIA~vmL~~SF~~Ll~IN~lQ~~~~r  264 (265)
T TIGR02139       209 FIAGNLPMKTEIAPLLIFIKLEQYDYAGATAIAVVMLLISFVLLLFINLLQWRALR  264 (265)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             22268880678899999777544123789999999999999999999999997506


No 61 
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional
Probab=99.59  E-value=1.4e-13  Score=100.15  Aligned_cols=175  Identities=14%  Similarity=0.200  Sum_probs=126.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHH---CCCCH-HHHHHH
Q ss_conf             484499999999999999788766677642101211-2320235034544201202101100000---02101-788999
Q gi|254780341|r   87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVL---FGLGM-VPGIVA  161 (281)
Q Consensus        87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~---fG~g~-~~~i~a  161 (281)
                      .++|....+|+..+..++.++++++.+.|+..+|.+ +.++.+...+-..+.+|..+.++|....   +|.-+ ..+++.
T Consensus        71 ~~f~~~~~NSliva~~~~~~~~~~~~~aaYalsr~~f~~~~~~~~~~l~~~~iP~~~~~iP~~~~~~~lgl~~t~~glil  150 (281)
T PRK10973         71 APFGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTL  150 (281)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             15999999999999999999999999999999984054199999999999998999999999999999397110899999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC---
Q ss_conf             99988789999958874129989999999607882010122368862679999999999999999999999705-88---
Q gi|254780341|r  162 TIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS-NG---  237 (281)
Q Consensus       162 ~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~-~G---  237 (281)
                       ...+.|.-+.....-++++|+|+.|||+..|||+||+++||.+|.+.|.+.+-.=.+...+|..-..+-.+-+ +.   
T Consensus       151 -~~~~~~~~i~l~~~f~~~IP~el~EAA~iDGas~~~~f~~IilPl~kP~i~tv~i~~fi~~WNef~~p~~~~~~~~~~t  229 (281)
T PRK10973        151 -PLMASATATFLFRQFFMTLPDELVEAARIDGAGPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLITTDASLGT  229 (281)
T ss_pred             -HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             -9999999999999999768888999999819867778154100265999999999999999997987788627853011


Q ss_pred             ----HHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             ----0499999997407898999999999
Q gi|254780341|r  238 ----LGVPVLRALNTVDIGRGFESGLCIV  262 (281)
Q Consensus       238 ----LG~~i~~a~~~~~~~~~~~~~l~Iv  262 (281)
                          +-.....+....|++..+++.+...
T Consensus       230 ~~~~l~~~~~~~~~~~~~~~~~A~~vl~~  258 (281)
T PRK10973        230 AVAGIKGMIATGEGTTEWNQVMAAMLLTL  258 (281)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999854677635999999999999


No 62 
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=99.58  E-value=3.9e-13  Score=97.58  Aligned_cols=184  Identities=24%  Similarity=0.307  Sum_probs=132.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHC---CCCH--HHHHHH
Q ss_conf             844999999999999997887666776421012112-3202350345442012021011000000---2101--788999
Q gi|254780341|r   88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLF---GLGM--VPGIVA  161 (281)
Q Consensus        88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~f---G~g~--~~~i~a  161 (281)
                      ++|....+|+-.+..++.+++++|.+.|+..+|.+. .++.+.-++-....+|..+.++|....+   |.-+  .+-++.
T Consensus        70 ~~~~~~~NS~iva~~~t~l~~~~~~laaYalar~~f~g~~~l~~~~l~~~m~P~~v~~iPl~~~~~~lgl~nt~~glil~  149 (281)
T COG0395          70 GFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQVLLIPLYLLMRKLGLLNTYWGLILP  149 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             89999998999999999999999999899999853360999999999999856999999899999982661047999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC---
Q ss_conf             999887899999588741299899999996078820101223688626799999999999999999999997-0588---
Q gi|254780341|r  162 TIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV-GSNG---  237 (281)
Q Consensus       162 ~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i-g~~G---  237 (281)
                      ......|..+....+-.+++|+|+.||||..|||+||.++||.+|.+.|.+.+-.=.+.+.+|..-..+-.+ +.+.   
T Consensus       150 ~~~~~~pf~ifl~~~ff~~iP~eLeEAA~iDGas~~~if~kI~lPl~~P~iaa~aI~~fi~~WN~fl~pli~~~~~~~~t  229 (281)
T COG0395         150 YLAFGLPFAIFLLRQFFRTIPKELEEAARIDGASEFQIFFKIVLPLAKPGLAAVAIFTFIGAWNEFLWPLILLSSPNLLT  229 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99998889999999999869899999999828965789999998703789999999999999999999999918876421


Q ss_pred             --HHHHHHHH-HHHHCHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf             --04999999-9740789899999999----9999999999
Q gi|254780341|r  238 --LGVPVLRA-LNTVDIGRGFESGLCI----VILAIILDRL  271 (281)
Q Consensus       238 --LG~~i~~a-~~~~~~~~~~~~~l~I----v~lai~lDri  271 (281)
                        +|-....+ ....|.+..+++.+..    +++-+.+.|-
T Consensus       230 l~v~l~~~~~~~~~~~w~~~~A~~vi~~lP~li~f~~~Qr~  270 (281)
T COG0395         230 LPVGLNSFGGSEGGTDWGLIMAAAVLAILPVLIVFLFFQRY  270 (281)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999996343356668999999999999999999999999


No 63 
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
Probab=99.55  E-value=1.7e-12  Score=93.64  Aligned_cols=195  Identities=24%  Similarity=0.341  Sum_probs=129.7

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHH--------------HHH
Q ss_conf             213484499999999999999788766677642101211232023503454420120210110--------------000
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIP--------------ALV  149 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p--------------~i~  149 (281)
                      ..+..+|+...+|+..+..++.+..++|..++....+..+.++..+-..-.-..+|+.+....              ...
T Consensus        61 ~~d~~f~~al~nT~~~~~~~v~~~~~lgl~lAlll~~~~~g~~~~r~~~~lP~~~~~vv~~~iw~~l~~~~~G~~n~~l~  140 (295)
T COG1175          61 FSDPTFWNALKNTLVFTVISVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWAISSVVAGLIWKWLFNPSFGLLNSLLL  140 (295)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             73847999999999999999999999999999998470447999999999998999999999999998876358999999


Q ss_pred             HCCCCH--------HHH----HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             002101--------788----99999988789999958874129989999999607882010122368862679999999
Q gi|254780341|r  150 LFGLGM--------VPG----IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLT  217 (281)
Q Consensus       150 ~fG~g~--------~~~----i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~  217 (281)
                      .+|+..        ..+    +++.+.-..|........|++++|+|+.|||+..|+|+||+++||.+|.-.|.++.-+-
T Consensus       141 ~~gl~~~~~wl~~~~~A~~~iii~~vW~~~~f~mli~lAgLq~Ip~~lyEAA~iDGA~~~q~f~~ItlP~l~p~i~~~~i  220 (295)
T COG1175         141 LLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPKELYEAARIDGASPWQRFRKITLPLLRPVIFFVLI  220 (295)
T ss_pred             HHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             80575556341390699999999999999849999999999569999999995899964365454104410279999999


Q ss_pred             HHHHHHHHHHHHHH-HHC-CCC-----HHHHHHH-HHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q ss_conf             99999999999999-970-588-----0499999-9974078989999999999999----999999987421
Q gi|254780341|r  218 QTIMLSLSMVVVTA-LVG-SNG-----LGVPVLR-ALNTVDIGRGFESGLCIVILAI----ILDRLFSIPDPR  278 (281)
Q Consensus       218 ~~~~~~l~~vvia~-~ig-~~G-----LG~~i~~-a~~~~~~~~~~~~~l~Iv~lai----~lDri~~~~~~r  278 (281)
                      .....++..--+.- +-| ++|     +.+++++ +.++.|.+.+-+..+.+.++.+    ..-|..+..++|
T Consensus       221 ~~~i~~~~~Fd~i~~lT~GGP~~~T~~l~~~~y~~af~~~~~G~asA~avil~~i~~~~~~~~~~~~~~~~~~  293 (295)
T COG1175         221 LRTIFAFQVFDLIYLLTGGGPGNATTTLAYYIYRTAFGGLDFGYAAAIAVILFLIVLILTVVQLRLLRRKERR  293 (295)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999973699998079996225599999999987006664899999999999999999999998743531


No 64 
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC; InterPro: IPR014157   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=99.50  E-value=2e-12  Score=93.34  Aligned_cols=173  Identities=23%  Similarity=0.352  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999978876667764210121-12320235034544201202101100000021017889999998878999
Q gi|254780341|r   93 TTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSV  171 (281)
Q Consensus        93 ~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi~  171 (281)
                      +=.||..++.-+.....+|+++|..+|.. .+++++++.++|.+-+.|+++...-++-++|.|-...++|.+..--++.+
T Consensus        61 ~R~SLg~al~~l~~~~~iG~~iG~~aGy~GG~vD~~~MR~~D~~lsfPt~~L~L~ivG~lG~Gl~nviiA~vl~~Wa~YA  140 (258)
T TIGR02790        61 ARVSLGLALLVLGLVLVIGVLIGLIAGYIGGRVDEVIMRVCDVFLSFPTIVLALAIVGLLGPGLENVIIALVLVQWAWYA  140 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999985301540200025547588755789999999857434799999999997547899


Q ss_pred             HHHH---HHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHC------CCCHHH
Q ss_conf             9958---87412998999999960788201012236886267999999999999999999999--970------588049
Q gi|254780341|r  172 RLTR---LGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTA--LVG------SNGLGV  240 (281)
Q Consensus       172 ~~t~---~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~--~ig------~~GLG~  240 (281)
                      |..+   -.+|+  ||++++||+.|+|+||+++|..+|+.+|.+..  ==++-+.+.+.-|++  ++|      ++.-|.
T Consensus       141 R~vRg~v~Slk~--~~fvlaar~~g~s~~~ii~rHi~~~i~~~iiV--LaTLeiG~~il~ia~LSFLGLGiQPPtPEWG~  216 (258)
T TIGR02790       141 RMVRGMVVSLKQ--KEFVLAARASGASHWQIIRRHILPNILSPIIV--LATLEIGHVILHIAALSFLGLGIQPPTPEWGI  216 (258)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             999999999986--88999999975898445042113210147999--99689999999998766742378987834564


Q ss_pred             HHHHHHHHHC--HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999997407--8989999999999999999
Q gi|254780341|r  241 PVLRALNTVD--IGRGFESGLCIVILAIILD  269 (281)
Q Consensus       241 ~i~~a~~~~~--~~~~~~~~l~Iv~lai~lD  269 (281)
                      ++.+|.++..  ..++++-|++|.+.-..+-
T Consensus       217 Ml~eak~y~~t~P~lmiyPG~ail~~V~~FN  247 (258)
T TIGR02790       217 MLSEAKEYLRTQPELMIYPGLAILITVMAFN  247 (258)
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf             6887689886271788886599999999997


No 65 
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologues..
Probab=99.43  E-value=1.1e-11  Score=88.85  Aligned_cols=192  Identities=19%  Similarity=0.277  Sum_probs=152.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCC---HHHHHHHH--CCCCHHH---HH
Q ss_conf             44999999999999997887666776421-0121123202350345442012021---01100000--0210178---89
Q gi|254780341|r   89 YWQETTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFV---YLIPALVL--FGLGMVP---GI  159 (281)
Q Consensus        89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v---~l~p~i~~--fG~g~~~---~i  159 (281)
                      +|+-++.|+.+++.|..++++.+...|+. +.+.+.++..-.-+++++|..--+|   |+-.++.+  +|+.-.|   ++
T Consensus         7 ~lQGAwVT~~iTl~gs~la~V~Af~aglgr~s~~~~lr~~a~~YiE~FRGTSllVQLFW~yfvLPlPP~gl~l~P~t~gv   86 (216)
T TIGR03004         7 LLQGAWVTLQITLAGSVLAVVVAFLAGLGRLSRFRILRALAVVYIEVFRGTSLLVQLFWLYFVLPLPPIGLELDPLTVGV   86 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf             99889999999999999999999999887523535887777787544203789999999999725799984025189999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             99999887899999588741299899999996078820101223688626799999999999999999999997058804
Q gi|254780341|r  160 VATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG  239 (281)
Q Consensus       160 ~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG  239 (281)
                      .+.....--.=.-.+.-++++|.++..||++++..+|.|.++|+.||+|++..+...-....-.++...+-++|.-.+|-
T Consensus        87 ~~Lglh~GaYGAEivRGA~~sv~~~Q~EAc~ALNftrfq~~rrI~LPQAl~~mmp~fgNlaIElLK~tslVSLIslaDlt  166 (216)
T TIGR03004        87 LALGLHVGAYGAEIVRGAVKSVSKEQLEACIALNFTRFQALRRIVLPQALVEMMPAFGNLAIELLKLTSLVSLISLADLT  166 (216)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99997326501688888899743658999998415367799876326799974386615899999878999999998676


Q ss_pred             HHHHHH-HHHHCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC
Q ss_conf             999999-9740789899999999-9999999999998742105
Q gi|254780341|r  240 VPVLRA-LNTVDIGRGFESGLCI-VILAIILDRLFSIPDPRDR  280 (281)
Q Consensus       240 ~~i~~a-~~~~~~~~~~~~~l~I-v~lai~lDri~~~~~~r~~  280 (281)
                      +.-..- .++.|+-..|+-.+.. -.++.++.-..+++|||-+
T Consensus       167 F~Aq~~r~~T~~tl~~fa~~LL~YFvMa~~i~l~~R~lEr~v~  209 (216)
T TIGR03004       167 FRAQSVRALTLDTLKVFALILLLYFVMALIISLAMRVLERRVA  209 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999841002799999999999999999999998866640


No 66 
>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism]
Probab=99.42  E-value=8.8e-12  Score=89.43  Aligned_cols=189  Identities=19%  Similarity=0.231  Sum_probs=126.7

Q ss_pred             CCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCC-------
Q ss_conf             484499----9999999999997887666776421-0121123202350345442012021011000000210-------
Q gi|254780341|r   87 QGYWQE----TTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG-------  154 (281)
Q Consensus        87 ~g~W~~----~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g-------  154 (281)
                      .|++++    ++.|+...+.+..+++++|..-+.. ++++|..+....-+..+++.+|.++..  +.+.||-.       
T Consensus         4 ~G~~~~l~~ga~~Tl~lAv~sl~lgl~lGl~~A~~kls~~r~lr~~~~~YtTv~RGvPELl~i--lliyfG~~~lL~~~~   81 (230)
T COG4215           4 AGWGDELLQGALVTLELAVCSLILGLLLGLLGALGKLSKNRLLRLLGNVYTTVIRGVPELLLI--LLIYFGGQILLNTLA   81 (230)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHHH
T ss_conf             760799999999999999999999999999999998666606789754353554267199999--999983099999999


Q ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---------------17889999998878999995887412998999999960788201012236886267999999999
Q gi|254780341|r  155 ---------------MVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT  219 (281)
Q Consensus       155 ---------------~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~  219 (281)
                                     ..++++++.+..-....-.-..+++.||+..+|+++++|.|++|+++++.+|+..+.=+-|+-..
T Consensus        82 ~~~~~~g~~~idi~~FvaGviaL~~i~gAYatEt~RGA~~AVp~GQ~EAa~AlGms~~~~frrI~lPqm~R~ALPGlgN~  161 (230)
T COG4215          82 DVTGALGVGFIDISPFVAGVIALGLIFGAYATETLRGAFKAVPKGQIEAARALGLSRSQTFRRIVLPQMWRHALPGLGNL  161 (230)
T ss_pred             HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             87301477745567499999999999999989999999972896518899980998768899999888999827885302


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999705880499999997407---8989999999999--99999999998742105
Q gi|254780341|r  220 IMLSLSMVVVTALVGSNGLGVPVLRALNTVD---IGRGFESGLCIVI--LAIILDRLFSIPDPRDR  280 (281)
Q Consensus       220 ~~~~l~~vvia~~ig~~GLG~~i~~a~~~~~---~~~~~~~~l~Iv~--lai~lDri~~~~~~r~~  280 (281)
                      -...+...   +++.-=|+...+..+.+-.+   -+-.|....+...  ++.+-....++.|||.+
T Consensus       162 WlvllKDT---ALVSvIGl~dl~~~a~~aa~~Tk~pFtfy~~aa~iYL~~t~vS~~~l~~lErr~~  224 (230)
T COG4215         162 WLVLLKDT---ALVSLIGLNDLMRQTQLAAGSTKEPFTFYIVAALIYLVITLVSNVVLLFLERRAS  224 (230)
T ss_pred             HHHHHHCC---HHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67776300---3542115999999999873455554399999999999999999999999999854


No 67 
>PRK10999 malF maltose transporter membrane protein; Provisional
Probab=99.38  E-value=9.2e-11  Score=83.27  Aligned_cols=149  Identities=21%  Similarity=0.313  Sum_probs=104.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHCCCHHHHHHHHCCCCCHHHHHH---------------HHCC
Q ss_conf             4499999999999999788766677642101-21123202350345442012021011000---------------0002
Q gi|254780341|r   89 YWQETTETLSLVLVSTFISMFIGVPLGVLAA-WYPRFYSIIRLFLDSMQTIPTFVYLIPAL---------------VLFG  152 (281)
Q Consensus        89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~-~~~~~~~~~~p~l~~~~~iP~~v~l~p~i---------------~~fG  152 (281)
                      +|+-..-|+.-+..++.+...+|+.+++.+- ++=|.+++.+-++-+-.++|+++-...--               .++|
T Consensus       283 f~~v~~WT~~fa~~sv~~~~~lGl~lAllln~~~~rgr~~~R~l~ilP~avP~~is~lvw~~mfn~~~G~iN~~L~~l~g  362 (520)
T PRK10999        283 FIAIFVWTVVFSLLTVVFTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFG  362 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf             56667667899999999999999999998287566607689999999989999999999998428886579999998059


Q ss_pred             CC------HHHH----HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10------1788----9999998878999995887412998999999960788201012236886267999999999999
Q gi|254780341|r  153 LG------MVPG----IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIML  222 (281)
Q Consensus       153 ~g------~~~~----i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~  222 (281)
                      +.      +..+    +++-....+|.+......|++++|+|+.|||+.-||++||+++|+.+|.-+|.+..-+-.+...
T Consensus       363 ~~~~Wl~dp~~A~~~viiv~~W~g~p~~~i~~la~Lq~IP~~lyEAA~iDGA~~~~~f~~ITlPll~~~~~~lli~~~i~  442 (520)
T PRK10999        363 IKPAWFSDPTTARTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAF  442 (520)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             99863479699999999999995172999999998715998999999852965650451467202358899999999999


Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             999999999970588
Q gi|254780341|r  223 SLSMVVVTALVGSNG  237 (281)
Q Consensus       223 ~l~~vvia~~ig~~G  237 (281)
                      ++.....--+...||
T Consensus       443 ~fn~F~~I~llT~GG  457 (520)
T PRK10999        443 NFNNFVLIQLLTNGG  457 (520)
T ss_pred             HHHCHHHHHHHCCCC
T ss_conf             962525776434899


No 68 
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=99.34  E-value=1.9e-10  Score=81.39  Aligned_cols=200  Identities=22%  Similarity=0.344  Sum_probs=146.7

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHCCCHHHHHHHHCCCCCHHHHHHHH------
Q ss_conf             877542213484499999999999999788766677642101-2112320235034544201202101100000------
Q gi|254780341|r   78 AMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAA-WYPRFYSIIRLFLDSMQTIPTFVYLIPALVL------  150 (281)
Q Consensus        78 ~~~~~~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~-~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~------  150 (281)
                      ...+....+..+|+-..+|++....+..++.+.|+|++...+ +.-|.++.+.-+.|..+++|....-..+.++      
T Consensus        10 Al~Ll~~ld~~l~~iv~~tl~vSl~~i~laalv~~pLa~vl~~~~frgkr~i~~i~~tl~s~PTVlvGLlLylLlSr~GP   89 (227)
T COG4662          10 ALFLLFSLDPELIGIVATTLYVSLISIFLAALVGVPLAFVLALREFRGKRFIKMIINTLLSMPTVLVGLLLYLLLSRSGP   89 (227)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf             99999818999999999999999999999997532899999983475479999999886316399999999999964699


Q ss_pred             ---CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---02--1017889999998878999995887412998999999960788201012236886267999999999999999
Q gi|254780341|r  151 ---FG--LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS  225 (281)
Q Consensus       151 ---fG--~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~  225 (281)
                         |+  +...+-+.-..+.++|.++-.....++++||+..|.++++|+|+.|...++.--+..+ +++.+--+.+-+.+
T Consensus        90 lG~f~LLfT~~amILGq~iL~lPlvia~~l~ale~~dpr~~ela~~lgas~~kl~~t~~~Earf~-l~aav~agfgR~V~  168 (227)
T COG4662          90 LGWFNLLFTQDAMILGQAILILPLVIAFVLTALESVDPRLKELARSLGASPLKLASTVFREARFG-LMAAVAAGFGRAVA  168 (227)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf             86303676210699887999999999999999984597899999980995899999999999867-99999998617999


Q ss_pred             HHHHHHHHCCC--CHHHHHHHH----HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999997058--804999999----974078989999999999999999999987421
Q gi|254780341|r  226 MVVVTALVGSN--GLGVPVLRA----LNTVDIGRGFESGLCIVILAIILDRLFSIPDPR  278 (281)
Q Consensus       226 ~vvia~~ig~~--GLG~~i~~a----~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r  278 (281)
                      -+-++-|+|++  |.-.-+..+    .+..|.+++.+-+++...+++.+.-+..+.++|
T Consensus       169 EvG~AmmvGGnI~g~TR~itTAIslET~kG~fa~gIaLgiVLlaial~ln~vl~~l~~~  227 (227)
T COG4662         169 EVGVAMMVGGNIRGRTRVITTAISLETNKGNFAQGIALGIVLLAIALALNFVLTALQGK  227 (227)
T ss_pred             HHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             86277603575111223300244356034529885899999999999999999984469


No 69 
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=99.25  E-value=1.4e-11  Score=88.28  Aligned_cols=178  Identities=26%  Similarity=0.382  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCHHHHHH-HHCCC--------CH--------
Q ss_conf             99999999997887666776421012--1123202350345442012021011000-00021--------01--------
Q gi|254780341|r   95 ETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVYLIPAL-VLFGL--------GM--------  155 (281)
Q Consensus        95 ~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~l~p~i-~~fG~--------g~--------  155 (281)
                      .|+.+...++.+++++|+|+|+..|.  .++.++.++.+--.-.++|.|- +.|.. .+|..        |.        
T Consensus        76 aT~ELC~~af~lal~~GiPlG~iagv~~~kw~d~~i~~is~~G~SiPvFW-lAl~ll~f~slh~~~~pv~GrydLLY~ik  154 (321)
T COG4168          76 ATMELCFLAFGLALIVGIPLGMIAGVTRHKWLDKLISAISLLGFSIPVFW-LALLLLLFFSLHLGWLPVSGRYDLLYEIK  154 (321)
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHCCCEECCCCEEEEEEEC
T ss_conf             18999999999999984647988775423078899999998546745999-99999999997514110343101456504


Q ss_pred             ----H-------------HH---------HHHHHHHHHHH---HHHHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             ----7-------------88---------99999988789---999958874129-989999999607882010122368
Q gi|254780341|r  156 ----V-------------PG---------IVATIVFSIPT---SVRLTRLGIIST-PPILKEAACAFGATPFQVFRKVEL  205 (281)
Q Consensus       156 ----~-------------~~---------i~a~~i~~~~p---i~~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~l  205 (281)
                          .             ++         +..+.+.++.|   ++|.......+| +++++++|..-|.|+|++++|..+
T Consensus       155 piTGfalIDawls~spyRt~~iqs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qNyikaA~trGlS~~~Ilr~hVl  234 (321)
T COG4168         155 PITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQNYIKAAATRGLSRFTILRRHVL  234 (321)
T ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             54662778898637705789999999998888999997347999999999899997424899999656035589999998


Q ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             86267999--9999999999999999999-7058804999999974078989999999999999999999987
Q gi|254780341|r  206 PFAIPQIV--ASLTQTIMLSLSMVVVTAL-VGSNGLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIP  275 (281)
Q Consensus       206 P~a~P~i~--~Gi~~~~~~~l~~vvia~~-ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~  275 (281)
                      ..++|.+.  .|.-.+.|+.+  ..+.|. .|=+|+|....+|.++.|+...-++.++|..+-++.|.+++..
T Consensus       235 rNalPplIPq~g~qfs~mLTl--amitEs~f~WPGiGRWLinAi~qqDy~sIsaGViViG~lviivnvlsdi~  305 (321)
T COG4168         235 RNALPPLIPQLGLQFSTMLTL--AMITESVFGWPGIGRWLINAIRQQDYASISAGVIVIGSLVIIVNVLSDIL  305 (321)
T ss_pred             HHCCCCCCCCHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHHHHCCHHHHHCCEEEEEEEEEEHHHHHHHH
T ss_conf             504785444136799999999--99999982897525999999876006766356279866544188889999


No 70 
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=99.23  E-value=3.9e-09  Score=73.52  Aligned_cols=182  Identities=24%  Similarity=0.299  Sum_probs=124.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHC---C-CCHHHHHHH
Q ss_conf             4844999999999999997887666776421012112-3202350345442012021011000000---2-101788999
Q gi|254780341|r   87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLF---G-LGMVPGIVA  161 (281)
Q Consensus        87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~f---G-~g~~~~i~a  161 (281)
                      ..+|.-..+|+........+.+.+..+.|+..+|.|. .|+...-..-++|.+|.++.++++..++   | +....+++.
T Consensus        69 ~~y~~W~~Nsliva~~t~~i~v~~~~~~aYafSR~rF~GRk~~L~~~Li~qMfP~~~aliAlY~l~~~lgllnt~~gLil  148 (282)
T COG3833          69 FPYLLWLWNSLIVALITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLILQMFPGVAALIALYVLLKLLGLLNTLWGLIL  148 (282)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             17899999999999999999999999989889986265589999999999998999999999999999657116789999


Q ss_pred             HHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC----
Q ss_conf             99988-789999958874129989999999607882010122368862679999999999999999999999-705----
Q gi|254780341|r  162 TIVFS-IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTAL-VGS----  235 (281)
Q Consensus       162 ~~i~~-~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~-ig~----  235 (281)
                      +-+.. .|.-.-..-.-++++|+|+.|+|+.-|||+||+++||.+|.+.|.+..-.-.+.+-.+...+.+.. ...    
T Consensus       149 ~Y~gG~ip~n~~l~Kgy~DTIP~sldEaA~iDGAt~~q~F~~IvLPLs~P~lavvaL~~FiGp~~dfiLa~~lL~~~~~~  228 (282)
T COG3833         149 AYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGDFILASLLLRDPENY  228 (282)
T ss_pred             HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             99647326889999844503895679998654850689999999860005999999999875779999999997481554


Q ss_pred             ---CCHHHHHHHHHHHHCHHHHHHHHHH-----HHHHHHHHHH
Q ss_conf             ---8804999999974078989999999-----9999999999
Q gi|254780341|r  236 ---NGLGVPVLRALNTVDIGRGFESGLC-----IVILAIILDR  270 (281)
Q Consensus       236 ---~GLG~~i~~a~~~~~~~~~~~~~l~-----Iv~lai~lDr  270 (281)
                         -||=+.+.. .+..+.+ .|+|+-.     ++++=+.++|
T Consensus       229 TlavGL~~~~~~-~~~~~~~-~FAAgAvL~alPi~iLF~~lQk  269 (282)
T COG3833         229 TLAVGLQSFLNG-PQNTNWG-LFAAGAVLIALPITILFLVLQK  269 (282)
T ss_pred             HHHHHHHHHHCC-CCHHHHH-HHHHHHHHHHCCHHHHHHHHHH
T ss_conf             259999999367-2102699-9999999986419999999999


No 71 
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=99.23  E-value=5e-11  Score=84.90  Aligned_cols=209  Identities=24%  Similarity=0.226  Sum_probs=154.8

Q ss_pred             CHHHHHHHHHHHHC-CCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCHH
Q ss_conf             30288887754221-348449999----99999999997887666776421012--112320235034544201202101
Q gi|254780341|r   72 TIAVGTAMGLLLII-KQGYWQETT----ETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVYL  144 (281)
Q Consensus        72 ~~~~~~~~~~~~i~-~~g~W~~~~----~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~l  144 (281)
                      .-+.--.+|.+++. ..--||+..    .|+.+...|.++.+++.+|+|+++++  .+..++..+-+.=+.-++|.|-..
T Consensus        73 ~~~~hLDFGiSYi~i~rpV~De~~~~LPaTl~LA~~aL~i~vlvSvPLG~LAA~~r~~~~D~~~R~~~FlG~siPnFWLA  152 (315)
T TIGR02789        73 WKALHLDFGISYISIDRPVLDEVARSLPATLELAGLALVIVVLVSVPLGILAARYRDRLPDHAVRFISFLGVSIPNFWLA  152 (315)
T ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99987314640566689508889743538899999999999999840889998873686407899999996430568999


Q ss_pred             HHHHHHC----------CCCHHH-HHH---HHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             1000000----------210178-899---9999887899999588-741299899999996078820101223688626
Q gi|254780341|r  145 IPALVLF----------GLGMVP-GIV---ATIVFSIPTSVRLTRL-GIISTPPILKEAACAFGATPFQVFRKVELPFAI  209 (281)
Q Consensus       145 ~p~i~~f----------G~g~~~-~i~---a~~i~~~~pi~~~t~~-gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~  209 (281)
                      -.++..|          |.|... -+.   +++...+-.-+|.-.+ =+++..+.++.-||.=|.++.|+.+|..||.|.
T Consensus       153 ~LLv~~fsvyL~lLP~~G~gtW~HlvLP~~tlal~~~a~y~RLLRaS~Ld~~qe~yv~yAR~RGi~~~~v~~~H~Lrna~  232 (315)
T TIGR02789       153 FLLVFLFSVYLDLLPVEGAGTWQHLVLPAVTLALMSVAIYARLLRASMLDNLQERYVTYARVRGIKERNVIRRHILRNAI  232 (315)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHECCCCHHHHHHHHHHCCCCH
T ss_conf             99999999986133767787331133888999999999999999999998628870730110264657768863241110


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Q ss_conf             799999999999999999999997-058804999999974078989999999999----99999999998742105
Q gi|254780341|r  210 PQIVASLTQTIMLSLSMVVVTALV-GSNGLGVPVLRALNTVDIGRGFESGLCIVI----LAIILDRLFSIPDPRDR  280 (281)
Q Consensus       210 P~i~~Gi~~~~~~~l~~vvia~~i-g~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~----lai~lDri~~~~~~r~~  280 (281)
                      -...||+=-.++.-+.+..|-|-| +=+|.|.+-..|.=+.|++.+-..++..+.    .=.+.|-+-.+.+.|+|
T Consensus       233 ~p~iTA~GM~~g~Ll~GT~viE~iFswPG~GRy~i~AifNRDyPviQcy~Ll~~~lfv~cNLivD~~~a~lDPR~r  308 (315)
T TIGR02789       233 LPMITALGMHIGELLGGTLVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMALLFVLCNLIVDLLQALLDPRIR  308 (315)
T ss_pred             HHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             2567760013887840711454101266610457433562376389999999999999999999999985187611


No 72 
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]
Probab=99.21  E-value=8.7e-11  Score=83.42  Aligned_cols=183  Identities=22%  Similarity=0.296  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHH---------------
Q ss_conf             9999999999997887666776421-012112320235034544201202101100000021017---------------
Q gi|254780341|r   93 TTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMV---------------  156 (281)
Q Consensus        93 ~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~---------------  156 (281)
                      ...|+.+...+..++.++++|+++. .++++.++....-++-+++..|-.+=  ..+.-.|.|..               
T Consensus        17 l~~TL~Ll~~S~~iG~~LAvpla~~r~s~~~~v~~~a~~y~~~fRGTPLLvQ--lfLiYyGlgqf~~ir~s~~lW~~lr~   94 (228)
T COG4160          17 LATTLWLLIISLVIGFVLALPLALARVSKNRWVSWPARAYTYVFRGTPLLVQ--LFLIYYGLGQFEWIRESIFLWPFLRE   94 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHEEEEEECCCHHHHH--HHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999999999972885001112501456538749999--99999464314688840665899825


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---88999999887899999588741299899999996078820101223688626799999999999999999999997
Q gi|254780341|r  157 ---PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV  233 (281)
Q Consensus       157 ---~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i  233 (281)
                         .++.+..+..-....-...-++++||+...|+++++|+||+|+++|+.+|.|+..=+.....-+.+-+...-+++-+
T Consensus        95 ~w~Ca~lAltLNtaAY~~Ei~rGAi~avP~Gq~Eaa~AlGmsr~~~~r~IiLP~Alr~ALp~YsNEvILmlK~Tala~ti  174 (228)
T COG4160          95 AWFCAVLALTLNTAAYTTEIFRGAIRAVPRGQWEAARALGMSRFKTLRRIILPSALRRALPAYSNEVILMLKSTALASTI  174 (228)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHH
T ss_conf             28899999999779999999988985289417899998196299999999977999984624588379998344154341


Q ss_pred             C---CCCHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0---588049999999740789899-999999999999999999874210
Q gi|254780341|r  234 G---SNGLGVPVLRALNTVDIGRGF-ESGLCIVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       234 g---~~GLG~~i~~a~~~~~~~~~~-~~~l~Iv~lai~lDri~~~~~~r~  279 (281)
                      .   --|..+.+.  .+.+|.=+.+ .+++.=..+..++-++.++.|+|-
T Consensus       175 Tv~Dl~g~ar~i~--~~Ty~~~~~f~~ag~iYl~it~il~~~~r~~E~r~  222 (228)
T COG4160         175 TVMDLMGYARLIN--SRTYDPYEVFGIAGAIYLIITGILTLLFRLIERRW  222 (228)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3999999999999--97768999999999999999999999999999987


No 73 
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.13  E-value=3.6e-10  Score=79.73  Aligned_cols=197  Identities=22%  Similarity=0.245  Sum_probs=134.6

Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHCCC----CH-
Q ss_conf             422134844999999999999997887666776421012112-320235034544201202101100000021----01-
Q gi|254780341|r   82 LLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLFGL----GM-  155 (281)
Q Consensus        82 ~~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~----g~-  155 (281)
                      ..+...+.+....-|+-.+.+++.+-.++|+..+...+|++. -++.+..++|+-.++.+.+.-...+.+||-    |. 
T Consensus        56 ~~~~~PdalsAi~LTllva~I~VPlN~vFGv~aAW~iakf~F~Gk~lL~tlIDlPFsVSPVvaGl~~vLl~g~~g~lG~w  135 (287)
T COG4208          56 AALSDPDALSAIKLTLLVALIAVPLNVVFGVAAAWAIARFEFPGKALLLTLIDLPFSVSPVVAGLVYVLLFGSNGWLGGW  135 (287)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf             98469668999999999998630078999999999999705884446656543777422799878999987056632078


Q ss_pred             -----------HHH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----------788-99999988789999958874129989999999607882010122368862679999999999999
Q gi|254780341|r  156 -----------VPG-IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS  223 (281)
Q Consensus       156 -----------~~~-i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~  223 (281)
                                 .|+ +.+++..++|.+.|-..-=+++--++..|+|.++|+|.||++|||.||+..=+++-|+-.+-.-+
T Consensus       136 l~~~~iqIiFa~PGiVLaT~FVT~PFVaREliPlmq~qG~~eEeAA~~LGAsgWQtFwrVTLPnIkWgLlYGvvL~nARa  215 (287)
T COG4208         136 LEAHDIQIIFAVPGIVLATIFVTCPFVARELIPLMQEQGTDEEEAALTLGASGWQTFWRVTLPNIRWGLLYGVVLTNARA  215 (287)
T ss_pred             HHHCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCHHH
T ss_conf             88579469995474135452221612898987999883984889998726230110256754730799988898716055


Q ss_pred             HH----HHHHHHHH-C-CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99----99999997-0-58804999999974078989999999999999999999987421
Q gi|254780341|r  224 LS----MVVVTALV-G-SNGLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPR  278 (281)
Q Consensus       224 l~----~vvia~~i-g-~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r  278 (281)
                      ..    ..|+.+-| | ++-+--.+..-.+.+|....|++.-...+++++-=-+-...|+|
T Consensus       216 mGEFGAVsVVSG~IrG~TnTlPL~VEily~eY~~~~AFa~AslLallAlvTL~lK~~le~r  276 (287)
T COG4208         216 MGEFGAVSVVSGHIRGETNTLPLHVEILYNEYNTVGAFAAASLLALLALVTLVLKTILEWR  276 (287)
T ss_pred             HCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4167736998445247766523016988764468899999999999999999999999987


No 74 
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons..
Probab=99.11  E-value=2.7e-09  Score=74.43  Aligned_cols=184  Identities=21%  Similarity=0.299  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCCHHHHH---HHHCCCCHHH---HHHHHH
Q ss_conf             999999999999997887666776421-012112320235034544201202101100---0000210178---899999
Q gi|254780341|r   91 QETTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFVYLIPA---LVLFGLGMVP---GIVATI  163 (281)
Q Consensus        91 ~~~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~---i~~fG~g~~~---~i~a~~  163 (281)
                      +-..+|+.-+..|+.+|+++|..+++. .++.++..+...-+++++|..|-++=+-.+   +.=||+.-.+   +++++-
T Consensus        21 ~gl~~Ti~atalGfaiA~VlGLvfAilRrsa~~~Iswp~~~vvEFiR~TPLLvQlyFlyYVLP~~Gi~LpA~~~GvlglG  100 (218)
T TIGR03003        21 EGLKVTIKATALGFAIALVLGLVFAILRRSARKLISWPTAVVVEFIRDTPLLVQLYFLYYVLPDYGISLPALLVGVLGLG  100 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99999999999999999999999988752156310100100465205680899999999883023331379999899988


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHC-CC
Q ss_conf             988789999958874129989999999607882010122368862679999999999999------99999999970-58
Q gi|254780341|r  164 VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS------LSMVVVTALVG-SN  236 (281)
Q Consensus       164 i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~------l~~vvia~~ig-~~  236 (281)
                      +.=--...---..|+++||+..=||++++..|+.|..++|.+|+|.|.|+-.+-.-+..=      +|.+++-|+-+ ++
T Consensus       101 lhYa~Y~aEVYR~G~eaVprGQWEAa~AlNlt~~~tyr~iIlPQAippi~Pa~gNYLvAM~KeTPvLSaiTVlE~M~~Ak  180 (218)
T TIGR03003       101 LHYAAYAAEVYRAGLEAVPRGQWEAATALNLTARQTYRDIILPQAIPPIVPALGNYLVAMLKETPVLSAITVLELMNQAK  180 (218)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             88998888888631025887616899985233544576510222100110045789999973274468899999999888


Q ss_pred             CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8049999999740789899999999999999999999874210
Q gi|254780341|r  237 GLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       237 GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~  279 (281)
                      -+|..-+   ++.+ +..+++ +.-.++.++.--..++.|+|-
T Consensus       181 ~Ig~~tf---rYle-P~TlVG-vfFL~lsii~~~~lrrlearl  218 (218)
T TIGR03003       181 SIGEETF---RYLE-PLTLVG-VFFLLLSIILAFLLRRLEARL  218 (218)
T ss_pred             HHHHCCC---CCCC-CHHHHH-HHHHHHHHHHHHHHHHHHHHC
T ss_conf             8862465---1044-078999-999999999999999998619


No 75 
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This entry represents CysW, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysT (IPR011865 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.11  E-value=6.8e-10  Score=78.07  Aligned_cols=197  Identities=20%  Similarity=0.228  Sum_probs=142.5

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHCC----CC----
Q ss_conf             2134844999999999999997887666776421012112-32023503454420120210110000002----10----
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLFG----LG----  154 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~fG----~g----  154 (281)
                      +...+--...--|+-.+.+.+.+=.++|+..+...+|++- -++.+..++|.--++-|.+.-...+.+||    -.    
T Consensus        40 i~~Pd~~sA~~LTlLv~~I~VPlN~~FGv~~Aw~~~rf~FpGk~lL~t~iDlPFSVSPVvAGL~~~LLyGrqGW~~Plie  119 (275)
T TIGR02140        40 ISDPDALSAIKLTLLVALIVVPLNTVFGVAAAWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVLLYGRQGWSQPLIE  119 (275)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             35955899998988667653307889999999998743167457677777604432248999999998431001362234


Q ss_pred             ------H----------------HHH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             ------1----------------788-99999988789999958874129989999999607882010122368862679
Q gi|254780341|r  155 ------M----------------VPG-IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQ  211 (281)
Q Consensus       155 ------~----------------~~~-i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~  211 (281)
                            .                .|+ ++|++-.++|.++|-..==+++.=+|..|||.++|||.||++|||.||+..=+
T Consensus       120 dGvrfsG~lG~~l~~~d~~IiF~~PGivLAT~FVT~PFVAREliPvl~~qG~~~EeAAltLGAs~WqtFwrVTLPnIkWg  199 (275)
T TIGR02140       120 DGVRFSGWLGPWLEDRDIKIIFSLPGIVLATIFVTLPFVARELIPVLEEQGTEQEEAALTLGASWWQTFWRVTLPNIKWG  199 (275)
T ss_pred             CCCCEECCCHHHHHHCCCEEEECCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCHHH
T ss_conf             34200042027888628858871413410234325880122001136315946899998727762233356616871578


Q ss_pred             HHHHHHHHHHHHHH----HHHHHH-HHC-CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999----999999-970-5880499999997407898999999999999999999998742105
Q gi|254780341|r  212 IVASLTQTIMLSLS----MVVVTA-LVG-SNGLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR  280 (281)
Q Consensus       212 i~~Gi~~~~~~~l~----~vvia~-~ig-~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~  280 (281)
                      ++=|+=.|---++.    ..|+.+ .=| ++-|=-.+..-++++|..-+|++.-...++|++-=-+=+-+|||++
T Consensus       200 LlYG~~LcnARamGEFGAVsVVSG~IrG~TnTLPL~Ve~lY~~Y~~~AAFA~AslLal~Al~TL~lK~~LE~r~~  274 (275)
T TIGR02140       200 LLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQSEAAFAAASLLALLALVTLVLKAILERRQG  274 (275)
T ss_pred             HHHHHHHHCCHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             985467751302002112568852689998763243232324013478899999999999999999999986406


No 76 
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=98.94  E-value=2.7e-08  Score=68.43  Aligned_cols=184  Identities=16%  Similarity=0.239  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999788766677642101211232-023503454420120210110000002101788999999887899999
Q gi|254780341|r   95 ETLSLVLVSTFISMFIGVPLGVLAAWYPRFY-SIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRL  173 (281)
Q Consensus        95 ~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~-~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi~~~  173 (281)
                      -|+.-.+.-++.+.++|..+|++.|.++-++ +.+.-++|.+-++|++-..+.++.+.|.+...+++++-+.-+|-.+|.
T Consensus        97 ~t~G~allvt~~a~l~g~~lGi~AG~t~gl~s~~lnHilDt~lSiPsLLlAiivvaf~gpsl~namfA~~LAllPrfirs  176 (296)
T COG4171          97 PTVGGALLVTLAATICGGVLGIFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSNAMFAVWLALLPRFIRS  176 (296)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             23413999999999999999999977777899999999999973589999999999608328889999999999999999


Q ss_pred             HHHHHH-CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CC----CCHHHHHHHHH
Q ss_conf             588741-299899999996078820101223688626799999999999999999999997--05----88049999999
Q gi|254780341|r  174 TRLGII-STPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV--GS----NGLGVPVLRAL  246 (281)
Q Consensus       174 t~~gl~-~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i--g~----~GLG~~i~~a~  246 (281)
                      .+.+++ +++|||+-++|--|+|....++...+|+..+.+.+-+..+..++.-....-+++  |+    +.-|.++-++.
T Consensus       177 iY~avh~EleKeYViaarLdGas~~~lL~~~IlPNI~~~~v~EitrAlsiAiLDI~ALgFl~LGAQ~PspEWGAMlgDsl  256 (296)
T COG4171         177 IYSAVHDELEKEYVIAARLDGASTLNLLWFAILPNITAILVTEITRALSIAILDIAALGFLDLGAQLPSPEWGAMLGDSL  256 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCC
T ss_conf             99999999887787776526766188999997251279999999999999999888861331257799946777742610


Q ss_pred             HHHCHH--H----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             740789--8----9999999999999999999987421
Q gi|254780341|r  247 NTVDIG--R----GFESGLCIVILAIILDRLFSIPDPR  278 (281)
Q Consensus       247 ~~~~~~--~----~~~~~l~Iv~lai~lDri~~~~~~r  278 (281)
                      .....+  .    +.+..+.|.+.-+.-|-+.++.++-
T Consensus       257 eLiY~APWTV~LPG~AI~~tvllvnl~gdG~r~Ainag  294 (296)
T COG4171         257 ELIYVAPWTVMLPGAAIMFTVLLVNLLGDGLRRAINAG  294 (296)
T ss_pred             CEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             32665451114264799999999999615799999702


No 77 
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]
Probab=98.89  E-value=1.9e-08  Score=69.30  Aligned_cols=188  Identities=20%  Similarity=0.304  Sum_probs=111.8

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCC-HHHHH---HHHCCC--CH
Q ss_conf             2134844999999999999997887666776421012--1123202350345442012021-01100---000021--01
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFV-YLIPA---LVLFGL--GM  155 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v-~l~p~---i~~fG~--g~  155 (281)
                      ..+...+.-.-+|+........++...++.+++++.+  +++..|.    .+.+.-+|.|. |.+..   ..++..  |.
T Consensus        72 F~~~~ff~i~rNTl~~s~~~li~gf~~pI~lAillnElr~~~~kk~----~QT~~y~PhFlSWVVv~~~v~~fls~d~Gi  147 (309)
T COG4209          72 FSSPDFFIILRNTLLYSVLFLILGFPVPIILAILLNELRNKVFKKV----VQTISYLPHFLSWVVVSGFVFAFLSIDGGI  147 (309)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCHHEEEHHHHHHHHHHHCCCCCH
T ss_conf             7187399999999999999999953799999999999987778888----766333000210030565788763667518


Q ss_pred             HHHHHHHH------HHH----HHHHH-------------HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             78899999------988----78999-------------99588741299899999996078820101223688626799
Q gi|254780341|r  156 VPGIVATI------VFS----IPTSV-------------RLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQI  212 (281)
Q Consensus       156 ~~~i~a~~------i~~----~~pi~-------------~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i  212 (281)
                      ...++...      .++    ++|++             ..-..++..+||++.|||+.-||||||+.||+.+|+.+|.|
T Consensus       148 iN~ll~~~g~~pi~fl~~~~wf~~i~i~~~vWK~~G~~SIiylAai~~Idpt~YEAA~vDGA~rwqqiwhITlP~i~P~i  227 (309)
T COG4209         148 INQLLMSLGGDPINFLTNPDWFRPIIIFSSVWKGAGWNSIIYLAAIAGIDPTLYEAAMVDGASRWQQIWHITLPAIRPLI  227 (309)
T ss_pred             HHHHHHHCCCCCEEHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHH
T ss_conf             99999982898310215886026788789888423678899999997279999999980548877888821103231499


Q ss_pred             HHHHHHHHHHHHHHHHHHH--HH--CCCCHHHHH--------HH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999--97--058804999--------99-99740789899999999999999999999874210
Q gi|254780341|r  213 VASLTQTIMLSLSMVVVTA--LV--GSNGLGVPV--------LR-ALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       213 ~~Gi~~~~~~~l~~vvia~--~i--g~~GLG~~i--------~~-a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~  279 (281)
                      .-=+    .++.....-++  .+  =.+-+|+.+        ++ +.+..|++..-++++-=.++++++=-+.+...||-
T Consensus       228 vIll----IL~iG~i~~~gFe~~yll~~~~~~~v~~vldtYVy~~gl~~Gd~s~sTAaGlf~svVg~iLl~~aN~iakr~  303 (309)
T COG4209         228 VILL----ILNIGNIFNAGFELFYLLPNPSGYDVTEVLDTYVYRGGLVTGDYSYSTAAGLFQSVVGFILLFLANRIAKRF  303 (309)
T ss_pred             HHHH----HHHHHHHHHCCHHHEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999----998523765372560660576687489899999998101357511899999999999999999999999970


No 78 
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.89  E-value=3.2e-07  Score=61.99  Aligned_cols=174  Identities=21%  Similarity=0.235  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHCCC-CHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf             97887666776421012-11232023503454420120210110000002101788999999---887899999588741
Q gi|254780341|r  104 TFISMFIGVPLGVLAAW-YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIV---FSIPTSVRLTRLGII  179 (281)
Q Consensus       104 ~~ia~~igiplGi~~~~-~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i---~~~~pi~~~t~~gl~  179 (281)
                      +.++.++|+..|-..|. ..+++-..+..+++-+++|.+-.++.+-..|..+..-.+....+   .++.-++|+-.  +|
T Consensus       151 T~~SaliGv~~GA~qGyfgg~vdL~~QRfIEvws~mP~lyllii~as~~~p~f~~ll~i~llf~Wm~lv~vvRaef--Lr  228 (341)
T COG4239         151 TLISALIGVLAGALQGYFGGWVDLLGQRFIEVWSGMPTLYLLIILASIFQPNFWWLLGIMLLFGWMSLVGVVRAEF--LR  228 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_conf             9999999998887753413004887705999984472999999999996854799999999999999999999999--98


Q ss_pred             CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHCHHH
Q ss_conf             2998999999960788201012236886267999999999999999999999970------5880499999997407898
Q gi|254780341|r  180 STPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVG------SNGLGVPVLRALNTVDIGR  253 (281)
Q Consensus       180 ~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig------~~GLG~~i~~a~~~~~~~~  253 (281)
                      .-+-|+++|||++|.++++++++..+|.|+-.+.+=+-.-..-+....+.-.+.|      ++.||.++.++.++.+.+.
T Consensus       229 ~Rn~dYvkAArAlGv~d~~Ii~rHilPnamvatlTflPf~l~~sitTltsLdFLgfglp~gspSLGELl~qgk~nlqapW  308 (341)
T COG4239         229 ARNLDYVKAARALGVSDRRIILRHILPNAMVATLTFLPFILSGSITTLTSLDFLGFGLPPGSPSLGELLNQGKNNLQAPW  308 (341)
T ss_pred             HCCHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCH
T ss_conf             60268899999739886503021326298899999878987063323001666526999999678999997652477842


Q ss_pred             -HHHHHHHH----HHHHHHHHHHHHHHHHHC
Q ss_conf             -99999999----999999999999874210
Q gi|254780341|r  254 -GFESGLCI----VILAIILDRLFSIPDPRD  279 (281)
Q Consensus       254 -~~~~~l~I----v~lai~lDri~~~~~~r~  279 (281)
                       ...+-+++    .++.++=|.+-++.+.|+
T Consensus       309 lgit~fv~l~~~lslLvfIgea~Rdafdp~~  339 (341)
T COG4239         309 LGITAFVVLSLLLSLLIFIGEAVRDAFDPRK  339 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             5588999999999999994299886315001


No 79 
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.81  E-value=2.2e-09  Score=74.96  Aligned_cols=110  Identities=25%  Similarity=0.364  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CC-CCHHH
Q ss_conf             7899999588741299899999996078820101223688626799999999999999999999997-----05-88049
Q gi|254780341|r  167 IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV-----GS-NGLGV  240 (281)
Q Consensus       167 ~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i-----g~-~GLG~  240 (281)
                      +|.+....++++-+||+++-+-+.++|+|+||++.+|.+|.|.|+|++.+-    +.+.-+|=+.||     |. +=++.
T Consensus       596 IP~IFsiAEDAiFSVP~sLs~GSLALGATPWQTL~~VVlltAspGIFSAiM----iG~GRAVGETMIVLMATGNtP~~~~  671 (733)
T COG4590         596 IPTIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFSAIM----IGLGRAVGETMIVLMATGNTPLLDW  671 (733)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHH----HHHHHHCCCEEEEEEECCCCCCCCC
T ss_conf             203453422443247854466730136871454014575046841889999----7511110625899972389852122


Q ss_pred             HHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999997407----------------898999999999999999999998742105
Q gi|254780341|r  241 PVLRALNTVD----------------IGRGFESGLCIVILAIILDRLFSIPDPRDR  280 (281)
Q Consensus       241 ~i~~a~~~~~----------------~~~~~~~~l~Iv~lai~lDri~~~~~~r~~  280 (281)
                      -|..+.+...                +-..|.+.++..........+..+.+.|.|
T Consensus       672 nIFeGmRtlaAniAvEmPEseVgs~HyRvLFL~ALvLltFTF~vNtLAE~vRqRLR  727 (733)
T COG4590         672 NIFEGMRTLAANIAVEMPESEVGSAHYRVLFLAALVLLTFTFAVNTLAEWVRQRLR  727 (733)
T ss_pred             CHHHHHHHHHHHHHHCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             28777888765521217654406633426899999999999999899999999999


No 80 
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.54  E-value=6.5e-05  Score=48.06  Aligned_cols=189  Identities=20%  Similarity=0.294  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHCCCHHHH---HHHHCCC-CCHHHH----------HHHHCCC
Q ss_conf             999999999999997887666776421012---1123202350345---4420120-210110----------0000021
Q gi|254780341|r   91 QETTETLSLVLVSTFISMFIGVPLGVLAAW---YPRFYSIIRLFLD---SMQTIPT-FVYLIP----------ALVLFGL  153 (281)
Q Consensus        91 ~~~~~Tl~~~~~~~~ia~~igiplGi~~~~---~~~~~~~~~p~l~---~~~~iP~-~v~l~p----------~i~~fG~  153 (281)
                      +.-..++.....+.+.++.+|+......-+   -.|.++.+...-.   -+..+|- |++++.          +--++|+
T Consensus        56 ~a~~~Sikis~aSsl~G~lig~~~a~alv~~~~ps~ir~~lltfsgvaSnFaGVPLAfAFiatLG~~G~vtv~Lk~~~g~  135 (282)
T COG4132          56 QAYWISIKISFASSLLGLLIGFLLAWALVLGGLPSWIRSFLLTFSGVASNFAGVPLAFAFIATLGRNGLVTVFLKTLGGF  135 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf             99999986799998899999999999999779478888778423145541368719999999965441699999984274


Q ss_pred             C-------HHH---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0-------178---899999988789999958874129989999999607882010122368862679999999999999
Q gi|254780341|r  154 G-------MVP---GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS  223 (281)
Q Consensus       154 g-------~~~---~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~  223 (281)
                      .       ..+   -.+.-.-+..|.++....-++++..+|.+|+++.+|++.||..++|.+|.-.|+.+.-.-.-..-+
T Consensus       136 ~~~~~~fnl~s~~GltitY~yFQIPL~vlil~PA~dgLk~ewreaa~~LGa~~~qYWrmva~PiL~PsllGt~vlLfANA  215 (282)
T COG4132         136 NLYSTGFNLLSFFGLTITYVYFQIPLMVLILTPAFDGLKKEWREAAAILGATGWQYWRMVALPILWPSLLGTFVLLFANA  215 (282)
T ss_pred             CEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             30046504888625257757886568999897666667899999999867742899999989985199988899999987


Q ss_pred             HH-HHHHHHHHCCC-CHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99-99999997058-80499999997407----89899999999999999999999874210
Q gi|254780341|r  224 LS-MVVVTALVGSN-GLGVPVLRALNTVD----IGRGFESGLCIVILAIILDRLFSIPDPRD  279 (281)
Q Consensus       224 l~-~vvia~~ig~~-GLG~~i~~a~~~~~----~~~~~~~~l~Iv~lai~lDri~~~~~~r~  279 (281)
                      +. .+.+=++-|++ .+=-....++-+.|    ...+.+-.+.+..+.-+..-+-.+..||.
T Consensus       216 fGA~ATayaLtgsslNivPI~l~AqIrGDVl~np~lg~ALa~~mi~it~v~n~~~~wlr~rs  277 (282)
T COG4132         216 FGAYATAYALTGSSLNIVPILLYAQIRGDVLHNPNLGYALAFGMIVITGVANLLYIWLRKRS  277 (282)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             75778787750687541689999998214568951899999999999999999999999877


No 81 
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.53  E-value=2.4e-07  Score=62.71  Aligned_cols=182  Identities=23%  Similarity=0.293  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCH-------------------
Q ss_conf             9999999978876667764210121--1232023503454420120210110000002101-------------------
Q gi|254780341|r   97 LSLVLVSTFISMFIGVPLGVLAAWY--PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGM-------------------  155 (281)
Q Consensus        97 l~~~~~~~~ia~~igiplGi~~~~~--~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~-------------------  155 (281)
                      ..+-+-++++.-++.+|+|+.-+.+  .+.+-.-..++.+-+++|+|.+.+.++.+|.-|.                   
T Consensus       136 iSlGlw~tli~YliSIPLGI~KAv~~gs~fDvwsS~viiigyAiP~FlfailLiVlFaGGsy~dwFPLRGLvSdnf~~L~  215 (364)
T COG4174         136 ISLGLWSTLIIYLISIPLGIRKAVRNGSRFDVWSSAVIIIGYAIPAFLFAILLIVLFAGGSYFDWFPLRGLVSDNFDQLS  215 (364)
T ss_pred             EEHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHCC
T ss_conf             87689999999997433328888747984202211368873242799999999974158761012001463458834347


Q ss_pred             ------------HHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------------788999999887899999588-7412998999999960788201012236886267999999999999
Q gi|254780341|r  156 ------------VPGIVATIVFSIPTSVRLTRL-GIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIML  222 (281)
Q Consensus       156 ------------~~~i~a~~i~~~~pi~~~t~~-gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~  222 (281)
                                  .-.+.+.++.++...+..|-+ =+.++.+.+.-.||+-|.|+.|++++....+|+=-+.+|.-.+..-
T Consensus       216 ~~~ki~DYlWH~tLPv~a~v~g~FAt~TlLtKNSFldEi~KqYVvTARAKGlserrvly~HVFRNAMLlviaGfP~afis  295 (364)
T COG4174         216 WYGKITDYLWHITLPVLALVLGGFATLTLLTKNSFLDEIRKQYVVTARAKGLSERRVLYKHVFRNAMLLVIAGFPAAFIS  295 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             27888999999888899999866777888753058999764526632315885545269988634278876178099999


Q ss_pred             HH-HH-HHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf             99-99-999999705880499999997407898999999999999999----9999987421
Q gi|254780341|r  223 SL-SM-VVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILAIIL----DRLFSIPDPR  278 (281)
Q Consensus       223 ~l-~~-vvia~~ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~l----Dri~~~~~~r  278 (281)
                      ++ .. ..|+-+..-+|||.+-+++.-+.|++.+|.....-.+++.+.    |-.-.+.+.|
T Consensus       296 ~FFTgSLLIE~iFSLdGlGllgyea~v~RDYPvvfgtLyIftL~GL~~~lisDl~yt~vDPR  357 (364)
T COG4174         296 MFFTGSLLIEVIFSLDGLGLLGYEAVVSRDYPVVFGTLYIFTLIGLLVSLISDLTYTLVDPR  357 (364)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHEEEEECCC
T ss_conf             99712479999872366211106878647886421668999999999999754417864575


No 82 
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.41  E-value=3.6e-05  Score=49.61  Aligned_cols=141  Identities=13%  Similarity=0.200  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCC--HHHHH-HHHCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9978876667764210121123202350345442012021--01100-000021--017889999998878999995887
Q gi|254780341|r  103 STFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFV--YLIPA-LVLFGL--GMVPGIVATIVFSIPTSVRLTRLG  177 (281)
Q Consensus       103 ~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v--~l~p~-i~~fG~--g~~~~i~a~~i~~~~pi~~~t~~g  177 (281)
                      +-.++++.++..=.+-+.+.|-....--.+-.+  +|.+.  +-.-. ..+.|.  +..+.+-+...+.+|-+...-...
T Consensus       360 asslALll~iL~le~~~~~qR~~~~~~l~LP~L--lP~lslvfG~qvL~L~~~l~~~w~~Vvw~H~~fv~P~v~l~Ls~p  437 (551)
T COG4135         360 ASSLALLLLILWLEWGGIPQRRQAYLWLWLPIL--LPALSLVFGQQVLALWLGLDGSWTAVVWGHLLFVMPWVLLILSPP  437 (551)
T ss_pred             HCHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             045999999999995798320110688888887--667789988999999962687439999999999999999984745


Q ss_pred             HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             41299899999996078820101223688626799999999999999999999997058804999999
Q gi|254780341|r  178 IISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRA  245 (281)
Q Consensus       178 l~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~a  245 (281)
                      =+++|++.++-|+++|-|+||++++|.+|.-.|..+...-.+...+++.-.-.-++|+|-+-..-+++
T Consensus       438 Wq~~dsrf~kIA~~lGks~~~Iff~vklPLlfra~L~A~AVGfaVsiaqYlPTL~lG~GRltTiTTEA  505 (551)
T COG4135         438 WQRIDSRFIKIAQTLGKSRAKIFFYVKLPLLFRACLIAFAVGFSVSIAQYLPTLWLGAGRLTTITTEA  505 (551)
T ss_pred             HHHHCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHH
T ss_conf             75527089999987083066788875045767999999998767429976147822677664111345


No 83 
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This entry represents thiamine ABC transporter, permease protein in bacteria, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane. The protein belongs to the larger ABC transport system. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).   Thiamine pyrophosphate (TPP)1 is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and -ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=98.05  E-value=0.00087  Score=41.31  Aligned_cols=188  Identities=20%  Similarity=0.236  Sum_probs=127.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHH-------------CC--
Q ss_conf             44999999999999997887666776421012112-320235034544201202101100000-------------02--
Q gi|254780341|r   89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVL-------------FG--  152 (281)
Q Consensus        89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~-------------fG--  152 (281)
                      +|.-..=+...+..++++++..|+.++=++.+.|. .++.+..++..--..|.+|..--++-.             ||  
T Consensus        45 L~H~~~FSF~QAlLS~~LS~~~~~lLARALy~~~F~G~~~LL~L~~lTl~LP~LV~~FG~~~~YG~~GWLA~L~~~lGl~  124 (519)
T TIGR01253        45 LQHLVLFSFGQALLSALLSVIFALLLARALYRKRFLGKKALLKLMALTLVLPVLVVVFGLLSVYGRSGWLATLANLLGLE  124 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
T ss_conf             89999999899999999999999999999740688426899999999999999999997776405753799999871875


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----101788999999887899999588741299899999996078820101223688626799999999999999999
Q gi|254780341|r  153 -----LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMV  227 (281)
Q Consensus       153 -----~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~v  227 (281)
                           +|-...++|+..+.+|.-.+...++++++|-|.++.|.-+|...||-++-|+-|--..++.--...-.|+|++--
T Consensus       125 W~~~~YGL~GIL~AH~FFN~PlA~~LlLQ~L~~IP~~QRQLAAQL~l~~W~F~~lVEWP~lR~Q~~P~~~LIFMLCF~SF  204 (519)
T TIGR01253       125 WTFSIYGLSGILLAHLFFNLPLAARLLLQALESIPYEQRQLAAQLNLRSWQFVKLVEWPVLRRQILPVAALIFMLCFASF  204 (519)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             03433415799999999615699999999874178157799997167753056663051233211258999999998889


Q ss_pred             -HHHHHHCCC---CHHHHHHHHHHHHCHHHHHHHHHH----HHHHHHH--HHHHHHHHHH
Q ss_conf             -999997058---804999999974078989999999----9999999--9999998742
Q gi|254780341|r  228 -VVTALVGSN---GLGVPVLRALNTVDIGRGFESGLC----IVILAII--LDRLFSIPDP  277 (281)
Q Consensus       228 -via~~ig~~---GLG~~i~~a~~~~~~~~~~~~~l~----Iv~lai~--lDri~~~~~~  277 (281)
                       ++=++=|++   -+-.-|++|... |+|..=+|.++    +.+++.+  -+|+.+..+.
T Consensus       205 ~~VL~LGGGPQ~TT~E~AIYQA~~y-~yD~~~AAllAlLQ~V~CL~L~~L~~RlS~~~~~  263 (519)
T TIGR01253       205 AVVLSLGGGPQATTLELAIYQALLY-DYDLAKAALLALLQFVFCLILVLLSSRLSKAIAN  263 (519)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9987358984068999999999873-1684689999999999999999998878764057


No 84 
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=97.99  E-value=2.6e-05  Score=50.52  Aligned_cols=121  Identities=21%  Similarity=0.212  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC
Q ss_conf             88999999887899999588741299899999996078820101223688626799999999999999-99999999705
Q gi|254780341|r  157 PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSL-SMVVVTALVGS  235 (281)
Q Consensus       157 ~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l-~~vvia~~ig~  235 (281)
                      +-..+...|.-..+.-.+..|++.|++...|+|+++|.++-++++-|..|+|+.-|.--+..-. +.+ .....|--+|-
T Consensus       268 aL~laLs~YTaaFIAEiVRaGI~~VskGQtEAa~sLGL~~~~t~RlVivPQAlRiIIPPLTSQY-LNLtKNSSLAiAIGY  346 (397)
T COG4597         268 ALFLALSFYTAAFIAEIVRAGIQAVSKGQTEAARSLGLRSSLTLRLVIVPQALRIIIPPLTSQY-LNLTKNSSLAIAIGY  346 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCEEECCCCCHHH-HHHCCCCHHHHCCCC
T ss_conf             9999999999999999998765025766177898628997544799984110156417621888-733235423200277


Q ss_pred             CCHHHHHHHHHHHHCHHHHHHH--HHHHHH--HHHHHHHHHHHHHHHCC
Q ss_conf             8804999999974078989999--999999--99999999998742105
Q gi|254780341|r  236 NGLGVPVLRALNTVDIGRGFES--GLCIVI--LAIILDRLFSIPDPRDR  280 (281)
Q Consensus       236 ~GLG~~i~~a~~~~~~~~~~~~--~l~Iv~--lai~lDri~~~~~~r~~  280 (281)
                      +.+=  ...+.-.+++++....  ...++.  +.....-++++..+|..
T Consensus       347 pDlv--~vagT~lNQTGQAvEvv~i~m~vYL~lSL~tSl~MN~~N~rma  393 (397)
T COG4597         347 PDLV--AVAGTVLNQTGQAVEVVAIWMLVYLSLSLTTSLLMNWYNRRMA  393 (397)
T ss_pred             CCEE--EEECEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7668--8733022455607899999999999999999999999876543


No 85 
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This entry represents thiamine ABC transporter, permease protein in bacteria, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane. The protein belongs to the larger ABC transport system. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).   Thiamine pyrophosphate (TPP)1 is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and -ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=97.87  E-value=0.00059  Score=42.32  Aligned_cols=186  Identities=14%  Similarity=0.242  Sum_probs=134.2

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-----HHHCCCHHHHHHHHCCCCCHHHHHHHHC----CCC
Q ss_conf             2134844999999999999997887666776421012112-----3202350345442012021011000000----210
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-----FYSIIRLFLDSMQTIPTFVYLIPALVLF----GLG  154 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-----~~~~~~p~l~~~~~iP~~v~l~p~i~~f----G~g  154 (281)
                      ...+.+|+....++.++..+-++|++..+.+=..-.+-++     ...+++--=-+.-++|.+|...-...+.    |..
T Consensus       316 ~~~~~LW~AL~~SL~IA~~~~~L~~~l~~~LL~~SR~L~~~~~~~~~Q~~~~~GM~ILA~P~~VLA~GlFLLL~~~~~~~  395 (519)
T TIGR01253       316 LANSVLWRALGYSLRIALLAALLALVLAIALLLLSRRLRALQKQKISQVLINAGMLILAIPILVLATGLFLLLNDRIFLN  395 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             73247899998899999999999999999999875889999878898899984289999779999998999861346777


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1---7889999998878999995887412998999999960788201012236886267999999999999999999999
Q gi|254780341|r  155 M---VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTA  231 (281)
Q Consensus       155 ~---~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~  231 (281)
                      .   .-.++.=++.++|.+.|.-.+=+|+.-+.|.+..+|+|-..||++.-|++-+-...+--.+-.+..+|+..-.+-+
T Consensus       396 ~~~~~IV~F~NAL~A~Py~L~~L~~P~~~~~~~Y~~LC~SLGI~GW~Rl~~~E~~~L~~PL~~AlAl~~~LS~GDF~~~A  475 (519)
T TIGR01253       396 IDLDIIVVFTNALSAIPYVLKVLEAPFRDITARYENLCNSLGIVGWSRLKLVELKALKAPLAYALALALVLSLGDFTVVA  475 (519)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_conf             54201013454777635999984051578899998755321733004778887999877999999999998521156200


Q ss_pred             HHCCC---CHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHH
Q ss_conf             97058---804999999974-078989999999999999999
Q gi|254780341|r  232 LVGSN---GLGVPVLRALNT-VDIGRGFESGLCIVILAIILD  269 (281)
Q Consensus       232 ~ig~~---GLG~~i~~a~~~-~~~~~~~~~~l~Iv~lai~lD  269 (281)
                      +.|.+   .|=++.++...+ .+.|.+..|++...+.++.+.
T Consensus       476 LFGN~~F~~LP~~LYQQ~G~YR~QD~AVTA~ILLLLC~~LF~  517 (519)
T TIGR01253       476 LFGNDDFRSLPFLLYQQLGSYRSQDAAVTALILLLLCFLLFA  517 (519)
T ss_pred             EECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             103753211378999872353361389999999999999985


No 86 
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065   This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems. The region covered by this entry generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=96.20  E-value=0.02  Score=33.05  Aligned_cols=80  Identities=19%  Similarity=0.302  Sum_probs=59.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCCHHHHH---HHHCCCCH---HHHHH
Q ss_conf             844999999999999997887666776421-012112320235034544201202101100---00002101---78899
Q gi|254780341|r   88 GYWQETTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFVYLIPA---LVLFGLGM---VPGIV  160 (281)
Q Consensus        88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~---i~~fG~g~---~~~i~  160 (281)
                      .+|+-...|+...+.|..+|.++|+.+|++ .+++|.+++...-+++++|++|-++-+..+   ...+|+.-   .++++
T Consensus         4 ~l~~G~~~Tl~~~~~~~~~g~~~Gl~~al~r~s~~~~l~~~~~~Y~~~~Rg~PlLvqlf~~yfgLP~~Gi~l~~~~Aa~~   83 (99)
T TIGR01726         4 FLLKGLLLTLLISVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLSPLTAAVI   83 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             89999999999999999999999999999987135999999999999996207999999999843542770677899999


Q ss_pred             HHHHHHH
Q ss_conf             9999887
Q gi|254780341|r  161 ATIVFSI  167 (281)
Q Consensus       161 a~~i~~~  167 (281)
                      +..++.-
T Consensus        84 al~l~~~   90 (99)
T TIGR01726        84 ALTLFEG   90 (99)
T ss_pred             HHHHHHH
T ss_conf             9999879


No 87 
>PRK13875 conjugal transfer protein TrbL; Provisional
Probab=70.42  E-value=6.9  Score=17.82  Aligned_cols=92  Identities=18%  Similarity=0.220  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCHHHHH----HHHH
Q ss_conf             99999999999---999999999972077689999999999998411-330288887754221348449999----9999
Q gi|254780341|r   27 EWFCNILSFIL---LKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRS-ITIAVGTAMGLLLIIKQGYWQETT----ETLS   98 (281)
Q Consensus        27 ~~~~~~i~~~l---~~~l~~~~~~l~~~p~~~~i~~v~~l~~~~~~~-~~~~~~~~~~~~~i~~~g~W~~~~----~Tl~   98 (281)
                      +++.+.++...   +.+.|..+-......|.++++.++.++++..-. ..+-+.+..++.++- +++|.++-    .-+.
T Consensus       120 ~Pll~~i~~l~G~~~~f~n~~~i~vl~lAwl~VilAFfilAiQlFvtliEFkLtTLaGFVLvP-Fgl~~kTaFlAErvLG  198 (443)
T PRK13875        120 RPLLESISDLMGFPSFFENFIQIVVLLLAWLLVLLAFFILAIQLFVTLIEFKLTTLAGFVLIP-FALFGKTAFLAERVLG  198 (443)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHCCCHHHHHHHHHH
T ss_conf             699999988637088997599999999999999999999999999999999999998999603-2531514899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999788766677642101
Q gi|254780341|r   99 LVLVSTFISMFIGVPLGVLAA  119 (281)
Q Consensus        99 ~~~~~~~ia~~igiplGi~~~  119 (281)
                      .++.+-+--+++++.+||--.
T Consensus       199 nVisSGiKvmVLAvIvGIGst  219 (443)
T PRK13875        199 NVVSSGIKVLVLAVIVGIGST  219 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHCHH
T ss_conf             999864799999999970347


No 88 
>pfam10767 DUF2593 Protein of unknown function (DUF2593). This family of proteins appear to be restricted to Enterobacteriaceae. Some members in the family are annotated as YbjO however currently there is no known function.
Probab=60.89  E-value=11  Score=16.70  Aligned_cols=13  Identities=23%  Similarity=0.302  Sum_probs=4.6

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             7689999999999
Q gi|254780341|r   52 PPLVFVCVVSLLV   64 (281)
Q Consensus        52 p~~~~i~~v~~l~   64 (281)
                      |.++.++..+.++
T Consensus         4 Pv~V~VAg~AIIa   16 (144)
T pfam10767         4 PVPVQVAGTAIIA   16 (144)
T ss_pred             CCHHHHHHHHHHH
T ss_conf             7025999999999


No 89 
>TIGR01495 ETRAMP early transcribed membrane protein (ETRAMP) family; InterPro: IPR006389   These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii . A homolog from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane . Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes..
Probab=57.60  E-value=8  Score=17.44  Aligned_cols=25  Identities=32%  Similarity=0.392  Sum_probs=17.2

Q ss_pred             HHHH-HHHHHHHHHHCCC-CHHHHHHH
Q ss_conf             9999-9999999997058-80499999
Q gi|254780341|r  220 IMLS-LSMVVVTALVGSN-GLGVPVLR  244 (281)
Q Consensus       220 ~~~~-l~~vvia~~ig~~-GLG~~i~~  244 (281)
                      +++| -....+|.++|++ |||++...
T Consensus        65 ilySl~~as~lAlL~g~~~GlG~y~~~   91 (99)
T TIGR01495        65 ILYSLSIASGLALLVGAGVGLGYYYKK   91 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999899999999999999999998752


No 90 
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=53.51  E-value=14  Score=15.95  Aligned_cols=57  Identities=16%  Similarity=0.017  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998878999995887412998999999960788201012236886267999999999999999
Q gi|254780341|r  161 ATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS  225 (281)
Q Consensus       161 a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~  225 (281)
                      +....+...++.||.-.--.-.++-+|..|-.|||+|-+.+        |....|...++.-++.
T Consensus       175 ~ll~~~~vllI~NtiR~~i~sRr~eIeVmklvGAt~~fI~~--------PFl~~g~~~gl~Ga~~  231 (297)
T COG2177         175 ILLALAAVLLIGNTIRLAIFSRRREIEVMKLVGATDSFIRR--------PFLYEGMLIGLLGALI  231 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999532379999982641188871--------9999999999999999


No 91 
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3; InterPro: IPR004709   Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport .    ; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane.
Probab=42.57  E-value=21  Score=14.91  Aligned_cols=37  Identities=19%  Similarity=0.446  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCC---CCHHHHH--CCCHHHHHH
Q ss_conf             999999788766677642101---2112320--235034544
Q gi|254780341|r   99 LVLVSTFISMFIGVPLGVLAA---WYPRFYS--IIRLFLDSM  135 (281)
Q Consensus        99 ~~~~~~~ia~~igiplGi~~~---~~~~~~~--~~~p~l~~~  135 (281)
                      ..+++...++++|+..|++.+   |+..-.+  .++|.+.++
T Consensus       213 fF~v~~G~G~L~Gv~~G~~~af~~rft~~~rYP~IEP~fvl~  254 (627)
T TIGR00840       213 FFVVTLGVGLLVGVVFGFLVAFITRFTKHIRYPVIEPLFVLL  254 (627)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf             666645488999999999999997510452046520489999


No 92 
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=37.06  E-value=26  Score=14.39  Aligned_cols=48  Identities=17%  Similarity=0.086  Sum_probs=31.4

Q ss_pred             HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             995887412998999999960788201012236886267999999999
Q gi|254780341|r  172 RLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT  219 (281)
Q Consensus       172 ~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~  219 (281)
                      .+...+--..+++.+|+--++|+|++|-.+...=-+-.+.+.--+|+.
T Consensus       143 ~~~l~~~i~~~~~eie~~LsLGaTp~~A~~~~~r~Air~aliPtins~  190 (256)
T COG0390         143 YERLVSEIISEKDEIEAKLSLGATPKEASRPYIRSAIRAALIPTINSM  190 (256)
T ss_pred             HHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             888899974038999999852898899979999998888640550255


No 93 
>PRK11026 ftsX cell division protein FtsX; Provisional
Probab=36.73  E-value=26  Score=14.36  Aligned_cols=51  Identities=14%  Similarity=-0.030  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998878999995887412998999999960788201012236886267999999
Q gi|254780341|r  162 TIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASL  216 (281)
Q Consensus       162 ~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi  216 (281)
                      ....+...++.||.-=--.-.++-+|..|-.|||+|-+    +.|.-.-+++.|+
T Consensus       188 ll~~a~~liI~NTIRL~i~sRr~EI~ImkLVGAT~~FI----r~PFl~eG~~~Gl  238 (309)
T PRK11026        188 LMVAAVFLVIGNSVRLSIFSRRDTINVMKLIGATDGFI----LRPFLYGGALLGF  238 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH----HCHHHHHHHHHHH
T ss_conf             99999999999999999998799999999938887889----7609999999999


No 94 
>pfam02954 HTH_8 Bacterial regulatory protein, Fis family.
Probab=33.88  E-value=29  Score=14.08  Aligned_cols=31  Identities=19%  Similarity=0.207  Sum_probs=25.7

Q ss_pred             HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             5887412998999999960788201012236
Q gi|254780341|r  174 TRLGIISTPPILKEAACAFGATPFQVFRKVE  204 (281)
Q Consensus       174 t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~  204 (281)
                      ...+++.-+-+.-++|+.+|.|+....+|+.
T Consensus        10 I~~aL~~~~gn~~~aA~~LGisr~tL~~kmk   40 (42)
T pfam02954        10 IEAALERTGGNKSKAARLLGISRRTLYRKLK   40 (42)
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999499799999997969999999997


No 95 
>PRK10132 hypothetical protein; Provisional
Probab=33.64  E-value=24  Score=14.55  Aligned_cols=19  Identities=21%  Similarity=0.254  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHCCCC
Q ss_conf             9978876667764210121
Q gi|254780341|r  103 STFISMFIGVPLGVLAAWY  121 (281)
Q Consensus       103 ~~~ia~~igiplGi~~~~~  121 (281)
                      |+.++..+|+.+|+++++.
T Consensus        89 sVGigAAVGvvlG~LLsRR  107 (108)
T PRK10132         89 SVGTAAAVGIFIGALLSLR  107 (108)
T ss_pred             HHHHHHHHHHHHHHHHHCC
T ss_conf             4769999999999999703


No 96 
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative; InterPro: IPR011744   This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme ..
Probab=33.51  E-value=27  Score=14.30  Aligned_cols=40  Identities=20%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             CCCHHHHHHHHHHH-HCCCCCHHHH-HHHHHHHHHHHHHHHH
Q ss_conf             13302888877542-2134844999-9999999999978876
Q gi|254780341|r   70 SITIAVGTAMGLLL-IIKQGYWQET-TETLSLVLVSTFISMF  109 (281)
Q Consensus        70 ~~~~~~~~~~~~~~-i~~~g~W~~~-~~Tl~~~~~~~~ia~~  109 (281)
                      ||..|+.+.+|... +.....|+.. -=||.+.++|+.++++
T Consensus        49 GWsvAIPTLlG~A~GiWlD~hyPs~fSWTLtmli~Gv~~GCL   90 (100)
T TIGR02230        49 GWSVAIPTLLGVALGIWLDKHYPSSFSWTLTMLIVGVVVGCL   90 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             899998889999873321146898703899999999987443


No 97 
>TIGR01948 rnfE electron transport complex, RnfABCDGE type, E subunit; InterPro: IPR010968   The six-subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the E subunit.; GO: 0006118 electron transport, 0019866 organelle inner membrane.
Probab=32.34  E-value=31  Score=13.93  Aligned_cols=31  Identities=26%  Similarity=0.526  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCH
Q ss_conf             26799999999999999999999---99705880
Q gi|254780341|r  208 AIPQIVASLTQTIMLSLSMVVVT---ALVGSNGL  238 (281)
Q Consensus       208 a~P~i~~Gi~~~~~~~l~~vvia---~~ig~~GL  238 (281)
                      -+|+++.|+-.++++.+++++++   |+.|+|-+
T Consensus       120 vl~S~lDG~g~GlGFT~~L~vlG~~REiLG~Gtl  153 (204)
T TIGR01948       120 VLPSILDGLGMGLGFTLVLVVLGSIREILGNGTL  153 (204)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             1788998999999999999999999998606822


No 98 
>pfam06553 BNIP3 BNIP3. This family consists of several mammalian specific BCL2/adenovirus E1B 19-kDa protein-interacting protein 3 or BNIP3 sequences. BNIP3 belongs to the Bcl-2 homology 3 (BH3)-only family, a Bcl-2-related family possessing an atypical Bcl-2 homology 3 (BH3) domain, which regulates PCD from mitochondrial sites by selective Bcl-2/Bcl-XL interactions. BNIP3 family members contain a C-terminal transmembrane domain that is required for their mitochondrial localisation, homodimerization, as well as regulation of their pro-apoptotic activities. BNIP3-mediated apoptosis has been reported to be independent of caspase activation and cytochrome c release and is characterized by early plasma membrane and mitochondrial damage, prior to the appearance of chromatin condensation or DNA fragmentation.
Probab=28.87  E-value=35  Score=13.57  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf             9999999999788766677642101211
Q gi|254780341|r   95 ETLSLVLVSTFISMFIGVPLGVLAAWYP  122 (281)
Q Consensus        95 ~Tl~~~~~~~~ia~~igiplGi~~~~~~  122 (281)
                      +=|+..+.+.+++.++|+.+|++.+|.-
T Consensus       162 e~L~vflpSl~lShlL~~GlGiyIgkRl  189 (197)
T pfam06553       162 EFLKVFLPTLLLSHLLGLGLGIYIGKRL  189 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf             9999999999999998723224773321


No 99 
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=27.82  E-value=37  Score=13.46  Aligned_cols=31  Identities=19%  Similarity=0.391  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCH
Q ss_conf             26799999999999999999999---99705880
Q gi|254780341|r  208 AIPQIVASLTQTIMLSLSMVVVT---ALVGSNGL  238 (281)
Q Consensus       208 a~P~i~~Gi~~~~~~~l~~vvia---~~ig~~GL  238 (281)
                      ..|+++.|+..++++.+..++++   |+.|+|-+
T Consensus       124 ~~~s~~Dglg~GlGft~~L~~lg~iREllG~Gtl  157 (224)
T PRK12405        124 VLLSALDGLGMGLGFTLALVVLGAIREILGNGTL  157 (224)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             5789999999999899999999999999827861


No 100
>pfam03649 UPF0014 Uncharacterized protein family (UPF0014).
Probab=27.76  E-value=37  Score=13.45  Aligned_cols=47  Identities=15%  Similarity=0.058  Sum_probs=32.1

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999588741299899999996078820101223688626799999999
Q gi|254780341|r  171 VRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQ  218 (281)
Q Consensus       171 ~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~  218 (281)
                      ...-.+++++ +++.+|+..++|+|+||-.....-.+..-.+.-.+|+
T Consensus       145 l~rl~~~l~~-~~~~iE~~LaLGAt~~~A~~~~~r~Air~aliP~in~  191 (250)
T pfam03649       145 LDKLIDMVKS-ERDIIWGYLALGATPIQALAPFIRNAIRAALIPTVNR  191 (250)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999998-7999999998799989999999999999985626999


No 101
>TIGR01939 nqrD NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; InterPro: IPR011292   Na(+)-translocating NADH-quinone reductase (NQR) functions as a primary Na(+) pump in the respiratory chain of Gram-negative marine and halophilic bacteria . The NQR complex reduces ubiquinone-1 to ubiquinol by two successive reactions, which involve the co-factor FAD. The NQR complex is composed of six subunits, this entry representing subunit D (NqrD).; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006118 electron transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=25.76  E-value=40  Score=13.23  Aligned_cols=60  Identities=18%  Similarity=0.322  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHCCC-CHHHHHHHHHH---------HHCHHHHHHHHHHHHHHHHHH
Q ss_conf             6799999999999999999999---997058-80499999997---------407898999999999999999
Q gi|254780341|r  209 IPQIVASLTQTIMLSLSMVVVT---ALVGSN-GLGVPVLRALN---------TVDIGRGFESGLCIVILAIIL  268 (281)
Q Consensus       209 ~P~i~~Gi~~~~~~~l~~vvia---~~ig~~-GLG~~i~~a~~---------~~~~~~~~~~~l~Iv~lai~l  268 (281)
                      .|+.+.|+-.++++.+..++++   |+.|+| =+|..+.-...         +.+.+.+..+=-+-.++|+++
T Consensus       127 ~~sflDGiGnGLGYG~vL~~i~~~REL~G~G~L~g~~v~P~~~~~~~g~PdGY~~nGLm~LaPsAffl~g~~I  199 (211)
T TIGR01939       127 VPSFLDGIGNGLGYGWVLVVIGFFRELFGSGKLLGIRVIPEKLVASGGWPDGYQNNGLMLLAPSAFFLIGIVI  199 (211)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             3677622100268999999999999874046011222121344215888764211303452058999999999


No 102
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=25.27  E-value=41  Score=13.17  Aligned_cols=20  Identities=15%  Similarity=0.066  Sum_probs=8.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q ss_conf             78820101223688626799
Q gi|254780341|r  193 GATPFQVFRKVELPFAIPQI  212 (281)
Q Consensus       193 Gas~~q~l~~V~lP~a~P~i  212 (281)
                      ...+-+.+-|..+|+++|+.
T Consensus        43 ~~e~P~~fgk~iil~~lpgt   62 (155)
T PRK06558         43 LTEEPEKFGKALILQLLPGT   62 (155)
T ss_pred             HHCCHHHHHHHHHHHHHHHH
T ss_conf             84485888999999996646


No 103
>PRK09699 D-allose transporter subunit; Provisional
Probab=25.13  E-value=41  Score=13.16  Aligned_cols=268  Identities=17%  Similarity=0.159  Sum_probs=109.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             0066777999999999999645-999999999999999999999720776899999999999984113302888877542
Q gi|254780341|r    5 IQAPIPLGDYLQEFFVCLTQNG-EWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLL   83 (281)
Q Consensus         5 ~~~~ip~~~~i~~~~~wl~~~~-~~~~~~i~~~l~~~l~~~~~~l~~~p~~~~i~~v~~l~~~~~~~~~~~~~~~~~~~~   83 (281)
                      ++++..+.++.++.=-.+.--. --.|..++..--.-.+...+.+...+...++. +....-...++...+.....++.-
T Consensus        12 ~~~~f~~~~f~~~~g~~~vl~~l~~vf~~~~~~~Fls~~Nl~~il~~~a~l~i~A-lG~t~Vii~GgiDLSvgs~~~l~~   90 (325)
T PRK09699         12 EKKPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIG-MGEFFAILVAGIDLSVGAILALSG   90 (325)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             5058789999999899999999999999977898898899999999999999999-999999993786152999999999


Q ss_pred             HCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHH---HHH-----CCCHHHHHHHHCCCCCHHHHHHHHCCCC
Q ss_conf             21348449999999-99999997887666776421012112---320-----2350345442012021011000000210
Q gi|254780341|r   84 IIKQGYWQETTETL-SLVLVSTFISMFIGVPLGVLAAWYPR---FYS-----IIRLFLDSMQTIPTFVYLIPALVLFGLG  154 (281)
Q Consensus        84 i~~~g~W~~~~~Tl-~~~~~~~~ia~~igiplGi~~~~~~~---~~~-----~~~p~l~~~~~iP~~v~l~p~i~~fG~g  154 (281)
                      +....+..+..... .....+..++..+|..-|.+..+.+-   +-+     ..+-+......-++....++....++-+
T Consensus        91 ~~~~~l~~~~~~~~~~a~l~~l~~g~~iG~iNG~lv~~~~ip~fIvTLgt~~i~~Gl~~~~t~g~~i~~~~~~~~~~~~~  170 (325)
T PRK09699         91 MVTAKLMLAGVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAA  170 (325)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHCC
T ss_conf             99999998478619999999999999999998597775087759999999999998888321895125799899998623


Q ss_pred             H-----HHHHHHHHHH-HHHHHHHHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_conf             1-----7889999998-8789999958874129-98999999960788201012236886267999999999--------
Q gi|254780341|r  155 M-----VPGIVATIVF-SIPTSVRLTRLGIIST-PPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT--------  219 (281)
Q Consensus       155 ~-----~~~i~a~~i~-~~~pi~~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~--------  219 (281)
                      .     .+..+...+. ....+.+.|.-|-+-- =-+=.|+||..|-+-.+.......=+.+=.=++|+-++        
T Consensus       171 ~~~giP~~~~i~~~~~~v~~~ll~~T~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~~y~lsG~~a~lAGil~~~r~~s~~p  250 (325)
T PRK09699        171 SVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP  250 (325)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             21355299999999999999998218141034465789999988488713404433898789999999999998578481


Q ss_pred             -HHHHHHHHHHH-HHHCC----CC--------HHHHHH----HHHHHHCHH---HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -99999999999-99705----88--------049999----999740789---8999999999999999999998
Q gi|254780341|r  220 -IMLSLSMVVVT-ALVGS----NG--------LGVPVL----RALNTVDIG---RGFESGLCIVILAIILDRLFSI  274 (281)
Q Consensus       220 -~~~~l~~vvia-~~ig~----~G--------LG~~i~----~a~~~~~~~---~~~~~~l~Iv~lai~lDri~~~  274 (281)
                       ......+-.++ ..+|+    +|        +|..+.    ++++..+.+   +...-+ .+.++++.+|++.++
T Consensus       251 ~~G~~~~l~aIaAvVlGGtsl~GG~Gsv~Gt~lGal~l~~i~ngl~~~gv~~~~q~~v~G-~iii~aV~ld~l~~r  325 (325)
T PRK09699        251 LAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMG-GLIIAAVALDRLISK  325 (325)
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHC
T ss_conf             427433788999999736067799715399999999999999999981998889999999-999999999999629


No 104
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.65  E-value=42  Score=13.10  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999997887666776421012
Q gi|254780341|r   97 LSLVLVSTFISMFIGVPLGVLAAW  120 (281)
Q Consensus        97 l~~~~~~~~ia~~igiplGi~~~~  120 (281)
                      +.+.+....+|++.|+..|.+.++
T Consensus         3 l~lail~ivl~ll~G~~~G~fiar   26 (71)
T COG3763           3 LWLAILLIVLALLAGLIGGFFIAR   26 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             289999999999999999999999


No 105
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666; InterPro: IPR010019   This entry identifies a clade of sequences from gamma and beta proteobacteria. These proteins are more than 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from Escherichia coli has been annotated as yccS..
Probab=24.46  E-value=42  Score=13.08  Aligned_cols=46  Identities=30%  Similarity=0.599  Sum_probs=23.4

Q ss_pred             CHHHHHHHHHHHHCCC----CCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3028888775422134----8449-------------99999999999997887666776421
Q gi|254780341|r   72 TIAVGTAMGLLLIIKQ----GYWQ-------------ETTETLSLVLVSTFISMFIGVPLGVL  117 (281)
Q Consensus        72 ~~~~~~~~~~~~i~~~----g~W~-------------~~~~Tl~~~~~~~~ia~~igiplGi~  117 (281)
                      |+++...+|...+...    |||-             .+=.-|..=.+|+++|+++|+|+=.+
T Consensus       392 RlSivl~lgyAIi~~fg~~~GYWILLTtlFVCQPNY~ATk~rL~~RIIGTl~G~~iG~pll~f  454 (713)
T TIGR01666       392 RLSIVLTLGYAIIQIFGIERGYWILLTTLFVCQPNYSATKVRLKLRIIGTLVGVVIGVPLLYF  454 (713)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999876400111677663343227970788998756799999999998778741


No 106
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113   This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.   In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=22.77  E-value=41  Score=13.17  Aligned_cols=20  Identities=35%  Similarity=0.265  Sum_probs=13.4

Q ss_pred             HHHHHHHCCCCHHHHHHHHH
Q ss_conf             99999960788201012236
Q gi|254780341|r  185 LKEAACAFGATPFQVFRKVE  204 (281)
Q Consensus       185 ~~eaa~~~Gas~~q~l~~V~  204 (281)
                      .-+|||.+|+|++|+=.+++
T Consensus       546 QAKAARlLg~TPRQVgYalr  565 (574)
T TIGR01817       546 QAKAARLLGLTPRQVGYALR  565 (574)
T ss_pred             HHHHHHHHCCCHHHHHHHHH
T ss_conf             99999973786558999998


No 107
>pfam06295 DUF1043 Protein of unknown function (DUF1043). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=22.69  E-value=40  Score=13.24  Aligned_cols=15  Identities=20%  Similarity=0.623  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             887666776421012
Q gi|254780341|r  106 ISMFIGVPLGVLAAW  120 (281)
Q Consensus       106 ia~~igiplGi~~~~  120 (281)
                      +++++|+.+|++.+|
T Consensus         4 i~lvvG~iiG~~~~R   18 (128)
T pfam06295         4 IGLIVGLIIGLIIMR   18 (128)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 108
>pfam05957 DUF883 Bacterial protein of unknown function (DUF883). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=21.18  E-value=49  Score=12.69  Aligned_cols=18  Identities=33%  Similarity=0.377  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             997887666776421012
Q gi|254780341|r  103 STFISMFIGVPLGVLAAW  120 (281)
Q Consensus       103 ~~~ia~~igiplGi~~~~  120 (281)
                      ++.++..+|+.+|++++|
T Consensus        76 svgiAagvG~llG~Ll~R   93 (94)
T pfam05957        76 AVGIAAGVGLLLGLLLAR   93 (94)
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999825


No 109
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=20.90  E-value=50  Score=12.65  Aligned_cols=17  Identities=24%  Similarity=0.391  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             97887666776421012
Q gi|254780341|r  104 TFISMFIGVPLGVLAAW  120 (281)
Q Consensus       104 ~~ia~~igiplGi~~~~  120 (281)
                      +.++..+|+.+|.+++|
T Consensus        87 VGvaAaVGlllGlLlsR  103 (104)
T COG4575          87 VGVAAAVGLLLGLLLSR  103 (104)
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             89999999999999805


No 110
>PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional
Probab=20.52  E-value=49  Score=12.70  Aligned_cols=15  Identities=27%  Similarity=0.643  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             887666776421012
Q gi|254780341|r  106 ISMFIGVPLGVLAAW  120 (281)
Q Consensus       106 ia~~igiplGi~~~~  120 (281)
                      +++++|+.+|++.+|
T Consensus         8 i~lvvGiiIG~~~~R   22 (134)
T PRK11677          8 IGLVVGIIIGAVAMR   22 (134)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


Done!