Query gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 281 No_of_seqs 216 out of 3631 Neff 7.0 Searched_HMMs 39220 Date Sun May 29 15:29:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780341.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK10952 glycine betaine trans 100.0 0 0 515.6 28.8 279 1-280 54-332 (354) 2 COG4176 ProW ABC-type proline/ 100.0 0 0 510.1 22.1 275 5-280 7-281 (290) 3 TIGR03416 ABC_choXWV_perm chol 100.0 0 0 484.6 28.1 267 6-272 1-267 (267) 4 COG0600 TauC ABC-type nitrate/ 100.0 1.4E-45 0 293.1 23.3 192 88-279 58-250 (258) 5 PRK11365 ssuC alkanesulfonate 100.0 1.4E-45 0 292.8 23.6 196 84-279 53-249 (263) 6 PRK10160 taurine transporter s 100.0 2.8E-45 0 291.5 20.0 194 86-279 73-267 (275) 7 COG1174 OpuBB ABC-type proline 100.0 1E-42 0 275.5 18.4 195 86-280 21-215 (221) 8 PRK10782 DL-methionine transpo 100.0 1E-31 2.6E-36 209.4 19.6 189 90-278 10-213 (217) 9 COG2011 AbcD ABC-type metal io 100.0 8.8E-29 2.3E-33 191.7 15.9 192 87-278 12-222 (222) 10 TIGR01183 ntrB nitrate ABC tra 99.9 8.4E-27 2.1E-31 179.8 14.7 188 87-274 13-202 (203) 11 pfam00528 BPD_transp_1 Binding 99.9 4.6E-26 1.2E-30 175.4 16.1 170 111-280 1-182 (183) 12 COG3639 ABC-type phosphate/pho 99.9 6.9E-23 1.8E-27 156.3 17.1 194 86-279 84-281 (283) 13 PRK10971 sulfate/thiosulfate t 99.9 2.5E-21 6.3E-26 146.9 18.8 197 84-280 51-275 (277) 14 TIGR03226 PhnU 2-aminoethylpho 99.9 1.1E-20 2.7E-25 143.1 20.9 198 83-280 84-309 (312) 15 PRK11602 cysW sulfate/thiosulf 99.9 1.5E-20 3.8E-25 142.2 19.7 177 83-259 56-256 (291) 16 PRK11268 pstA phosphate transp 99.9 3.5E-20 8.9E-25 140.0 21.2 194 85-278 75-292 (292) 17 PRK11275 pstC phosphate transp 99.9 5.4E-20 1.4E-24 138.8 21.9 195 86-280 68-313 (319) 18 COG0573 PstC ABC-type phosphat 99.9 4.6E-20 1.2E-24 139.3 21.3 195 86-280 74-307 (310) 19 COG0581 PstA ABC-type phosphat 99.9 8.4E-20 2.1E-24 137.7 22.1 139 87-225 67-214 (292) 20 PRK09421 modB molybdate ABC tr 99.9 2.2E-20 5.5E-25 141.2 19.0 166 85-250 3-193 (229) 21 PRK09500 potC spermidine/putre 99.9 3.1E-20 8E-25 140.3 18.3 197 84-280 51-256 (257) 22 COG1177 PotC ABC-type spermidi 99.9 4.8E-20 1.2E-24 139.1 18.0 194 85-278 59-265 (267) 23 PRK09497 potB spermidine/putre 99.9 5.1E-20 1.3E-24 139.0 17.2 196 86-281 58-284 (285) 24 PRK10683 putrescine transporte 99.9 1.2E-19 3E-24 136.8 17.9 196 84-279 90-312 (317) 25 cd06261 TM_PBP2 Transmembrane 99.9 1E-19 2.6E-24 137.2 17.2 160 94-253 2-177 (190) 26 PRK10592 putrescine transporte 99.9 1.1E-19 2.9E-24 136.9 17.3 196 84-279 56-271 (281) 27 COG4149 ModC ABC-type molybdat 99.8 7.9E-20 2E-24 137.8 14.0 189 87-280 3-221 (225) 28 TIGR02138 phosphate_pstC phosp 99.8 2.8E-19 7.1E-24 134.6 15.9 188 93-280 73-317 (317) 29 TIGR03255 PhnV 2-aminoethylpho 99.8 3.1E-18 7.8E-23 128.3 20.3 193 87-279 64-270 (272) 30 TIGR00974 3a0107s02c phosphate 99.8 5.4E-20 1.4E-24 138.8 10.9 194 87-280 57-301 (302) 31 TIGR03262 PhnU2 putative 2-ami 99.8 7.1E-18 1.8E-22 126.1 19.9 194 87-280 328-541 (546) 32 COG1178 ThiP ABC-type Fe3+ tra 99.8 3.1E-17 7.8E-22 122.3 22.5 179 84-263 49-249 (540) 33 PRK09433 thiP thiamine transpo 99.8 3.6E-17 9.3E-22 121.8 20.7 181 88-268 326-521 (536) 34 COG1176 PotB ABC-type spermidi 99.8 3.8E-17 9.7E-22 121.7 20.3 168 88-259 63-261 (287) 35 PRK09494 glnP glutamine ABC tr 99.8 1.4E-17 3.5E-22 124.3 18.0 193 89-281 15-218 (219) 36 TIGR02141 modB_ABC molybdate A 99.8 1.1E-17 2.9E-22 124.9 16.8 179 95-278 2-212 (212) 37 TIGR01097 3A0109s02M phosphona 99.8 5.3E-18 1.3E-22 126.9 13.3 187 90-276 2-192 (192) 38 CHL00187 cysT sulfate transpor 99.8 3.2E-17 8.2E-22 122.2 16.4 154 83-236 45-216 (235) 39 TIGR03262 PhnU2 putative 2-ami 99.8 2.6E-16 6.7E-21 116.7 19.5 190 83-272 46-256 (546) 40 PRK10352 nickel transporter pe 99.8 1.2E-16 3.1E-21 118.7 16.0 193 89-281 94-308 (314) 41 COG0555 CysU ABC-type sulfate 99.8 1.3E-16 3.4E-21 118.4 16.1 189 85-278 51-271 (274) 42 PRK09471 oppB oligopeptide tra 99.7 1.5E-16 3.8E-21 118.2 16.0 191 90-280 91-305 (306) 43 COG1173 DppC ABC-type dipeptid 99.7 4.5E-16 1.1E-20 115.3 18.0 188 93-280 85-287 (289) 44 COG4986 ABC-type anion transpo 99.7 5.5E-17 1.4E-21 120.8 13.2 187 94-280 320-522 (523) 45 PRK11123 arginine transporter 99.7 8.3E-16 2.1E-20 113.7 18.7 187 91-279 9-230 (238) 46 PRK11122 artM arginine transpo 99.7 7.9E-16 2E-20 113.8 18.6 185 91-280 10-216 (222) 47 PRK10914 dipeptide transporter 99.7 5E-16 1.3E-20 115.0 17.0 190 92-281 95-337 (339) 48 COG0601 DppB ABC-type dipeptid 99.7 8.9E-16 2.3E-20 113.5 17.4 193 89-281 91-315 (317) 49 COG4986 ABC-type anion transpo 99.7 1.4E-17 3.7E-22 124.2 8.2 175 92-270 10-204 (523) 50 COG1178 ThiP ABC-type Fe3+ tra 99.7 9.2E-16 2.3E-20 113.4 17.5 187 88-274 330-534 (540) 51 COG0765 HisM ABC-type amino ac 99.7 1.3E-15 3.3E-20 112.5 18.2 193 88-280 17-219 (222) 52 PRK09881 ATP-dependent peptide 99.7 1.1E-15 2.8E-20 113.0 17.7 188 93-280 93-294 (296) 53 TIGR00969 3a0106s02 sulfate AB 99.7 3.1E-18 7.8E-23 128.3 4.2 184 95-278 73-280 (280) 54 TIGR01581 Mo_ABC_porter NifC-l 99.7 5.4E-16 1.4E-20 114.7 15.5 175 91-265 21-220 (226) 55 PRK10913 dipeptide transporter 99.7 1.8E-15 4.7E-20 111.6 17.8 188 93-280 98-299 (300) 56 PRK09433 thiP thiamine transpo 99.7 8.2E-15 2.1E-19 107.7 20.4 192 85-278 48-267 (536) 57 PRK10417 nikC nickel transport 99.7 5E-15 1.3E-19 108.9 18.3 189 92-280 65-267 (272) 58 PRK10561 glycerol-3-phosphate 99.7 9.1E-15 2.3E-19 107.4 18.4 196 84-279 48-276 (280) 59 PRK10998 malG maltose transpor 99.6 1E-13 2.7E-18 101.0 17.8 182 89-270 81-283 (296) 60 TIGR02139 permease_CysT sulfat 99.6 3.7E-16 9.3E-21 115.8 4.5 179 95-278 54-264 (265) 61 PRK10973 glycerol-3-phosphate 99.6 1.4E-13 3.7E-18 100.2 15.3 175 87-262 71-258 (281) 62 COG0395 UgpE ABC-type sugar tr 99.6 3.9E-13 9.9E-18 97.6 17.3 184 88-271 70-270 (281) 63 COG1175 UgpA ABC-type sugar tr 99.6 1.7E-12 4.5E-17 93.6 18.3 195 84-278 61-293 (295) 64 TIGR02790 nickel_nikC nickel A 99.5 2E-12 5E-17 93.3 15.5 173 93-269 61-247 (258) 65 TIGR03004 ectoine_ehuC ectoine 99.4 1.1E-11 2.8E-16 88.9 14.4 192 89-280 7-209 (216) 66 COG4215 ArtQ ABC-type arginine 99.4 8.8E-12 2.2E-16 89.4 13.8 189 87-280 4-224 (230) 67 PRK10999 malF maltose transpor 99.4 9.2E-11 2.4E-15 83.3 16.8 149 89-237 283-457 (520) 68 COG4662 TupA ABC-type tungstat 99.3 1.9E-10 4.8E-15 81.4 16.5 200 78-278 10-227 (227) 69 COG4168 SapB ABC-type antimicr 99.2 1.4E-11 3.5E-16 88.3 6.4 178 95-275 76-305 (321) 70 COG3833 MalG ABC-type maltose 99.2 3.9E-09 9.8E-14 73.5 18.1 182 87-270 69-269 (282) 71 TIGR02789 nickel_nikB nickel A 99.2 5E-11 1.3E-15 84.9 8.3 209 72-280 73-308 (315) 72 COG4160 ArtM ABC-type arginine 99.2 8.7E-11 2.2E-15 83.4 8.7 183 93-279 17-222 (228) 73 COG4208 CysW ABC-type sulfate 99.1 3.6E-10 9.1E-15 79.7 8.9 197 82-278 56-276 (287) 74 TIGR03003 ectoine_ehuD ectoine 99.1 2.7E-09 6.9E-14 74.4 12.6 184 91-279 21-218 (218) 75 TIGR02140 permease_CysW sulfat 99.1 6.8E-10 1.7E-14 78.1 9.4 197 84-280 40-274 (275) 76 COG4171 SapC ABC-type antimicr 98.9 2.7E-08 6.9E-13 68.4 12.0 184 95-278 97-294 (296) 77 COG4209 LplB ABC-type polysacc 98.9 1.9E-08 4.9E-13 69.3 9.9 188 84-279 72-303 (309) 78 COG4239 ABC-type uncharacteriz 98.9 3.2E-07 8.1E-12 62.0 16.1 174 104-279 151-339 (341) 79 COG4590 ABC-type uncharacteriz 98.8 2.2E-09 5.7E-14 75.0 2.9 110 167-280 596-727 (733) 80 COG4132 ABC-type uncharacteriz 98.5 6.5E-05 1.7E-09 48.1 19.5 189 91-279 56-277 (282) 81 COG4174 ABC-type uncharacteriz 98.5 2.4E-07 6.1E-12 62.7 6.5 182 97-278 136-357 (364) 82 COG4135 ABC-type uncharacteriz 98.4 3.6E-05 9.2E-10 49.6 15.0 141 103-245 360-505 (551) 83 TIGR01253 thiP thiamine/thiami 98.0 0.00087 2.2E-08 41.3 16.2 188 89-277 45-263 (519) 84 COG4597 BatB ABC-type amino ac 98.0 2.6E-05 6.5E-10 50.5 6.9 121 157-280 268-393 (397) 85 TIGR01253 thiP thiamine/thiami 97.9 0.00059 1.5E-08 42.3 12.2 186 84-269 316-517 (519) 86 TIGR01726 HEQRo_perm_3TM amino 96.2 0.02 5.2E-07 33.1 6.6 80 88-167 4-90 (99) 87 PRK13875 conjugal transfer pro 70.4 6.9 0.00018 17.8 9.9 92 27-119 120-219 (443) 88 pfam10767 DUF2593 Protein of u 60.9 11 0.00027 16.7 7.2 13 52-64 4-16 (144) 89 TIGR01495 ETRAMP early transcr 57.6 8 0.0002 17.4 2.3 25 220-244 65-91 (99) 90 COG2177 FtsX Cell division pro 53.5 14 0.00036 16.0 13.7 57 161-225 175-231 (297) 91 TIGR00840 b_cpa1 sodium/hydrog 42.6 21 0.00054 14.9 4.2 37 99-135 213-254 (627) 92 COG0390 ABC-type uncharacteriz 37.1 26 0.00066 14.4 7.2 48 172-219 143-190 (256) 93 PRK11026 ftsX cell division pr 36.7 26 0.00066 14.4 11.4 51 162-216 188-238 (309) 94 pfam02954 HTH_8 Bacterial regu 33.9 29 0.00074 14.1 2.2 31 174-204 10-40 (42) 95 PRK10132 hypothetical protein; 33.6 24 0.00062 14.6 1.6 19 103-121 89-107 (108) 96 TIGR02230 ATPase_gene1 F0F1-AT 33.5 27 0.00068 14.3 1.8 40 70-109 49-90 (100) 97 TIGR01948 rnfE electron transp 32.3 31 0.00078 13.9 4.2 31 208-238 120-153 (204) 98 pfam06553 BNIP3 BNIP3. This fa 28.9 35 0.0009 13.6 2.0 28 95-122 162-189 (197) 99 PRK12405 electron transport co 27.8 37 0.00094 13.5 5.2 31 208-238 124-157 (224) 100 pfam03649 UPF0014 Uncharacteri 27.8 37 0.00094 13.5 6.9 47 171-218 145-191 (250) 101 TIGR01939 nqrD NADH:ubiquinone 25.8 40 0.001 13.2 2.8 60 209-268 127-199 (211) 102 PRK06558 V-type ATP synthase s 25.3 41 0.001 13.2 7.5 20 193-212 43-62 (155) 103 PRK09699 D-allose transporter 25.1 41 0.0011 13.2 17.0 268 5-274 12-325 (325) 104 COG3763 Uncharacterized protei 24.6 42 0.0011 13.1 2.4 24 97-120 3-26 (71) 105 TIGR01666 YCCS hypothetical me 24.5 42 0.0011 13.1 4.1 46 72-117 392-454 (713) 106 TIGR01817 nifA Nif-specific re 22.8 41 0.001 13.2 1.2 20 185-204 546-565 (574) 107 pfam06295 DUF1043 Protein of u 22.7 40 0.001 13.2 1.1 15 106-120 4-18 (128) 108 pfam05957 DUF883 Bacterial pro 21.2 49 0.0013 12.7 1.8 18 103-120 76-93 (94) 109 COG4575 ElaB Uncharacterized c 20.9 50 0.0013 12.6 1.8 17 104-120 87-103 (104) 110 PRK11677 cytochrome d ubiquino 20.5 49 0.0013 12.7 1.2 15 106-120 8-22 (134) No 1 >PRK10952 glycine betaine transporter membrane protein; Provisional Probab=100.00 E-value=0 Score=515.62 Aligned_cols=279 Identities=39% Similarity=0.622 Sum_probs=276.0 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 98200066777999999999999645999999999999999999999720776899999999999984113302888877 Q gi|254780341|r 1 MSPIIQAPIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMG 80 (281) Q Consensus 1 ~~~~~~~~ip~~~~i~~~~~wl~~~~~~~~~~i~~~l~~~l~~~~~~l~~~p~~~~i~~v~~l~~~~~~~~~~~~~~~~~ 80 (281) ||||+++.||+++|+|+++||+.+|++++|+.+++++++.++.+++.++.+||++++.++++++|+.. |+|.++++..+ T Consensus 54 ~~~~~~~~iPl~~Wv~~~vdWl~~~f~p~F~~I~~~i~~~l~~~~~~L~~~P~~~~i~~~~~law~~~-g~~la~~t~~~ 132 (354) T PRK10952 54 LDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGIRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQIS-GVGMGVATLIS 132 (354) T ss_pred CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHHHHHHHH T ss_conf 26564277167999999999999985999999999999999999999802988999999999999980-47999999999 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHH Q ss_conf 54221348449999999999999978876667764210121123202350345442012021011000000210178899 Q gi|254780341|r 81 LLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIV 160 (281) Q Consensus 81 ~~~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~ 160 (281) +.+++..|+|+++|+|++++.+++.+|+++|+|+|++++||++++++++|++|.+||+|+|+||+|++++||+|..++++ T Consensus 133 l~~I~~~G~W~~aM~TLalvlvav~~~~iiGiplGI~~ars~r~~~il~PiLD~mQT~P~FVYLiP~vmlFGiG~vpavi 212 (354) T PRK10952 133 LIAIGAIGAWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVV 212 (354) T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHH T ss_conf 99999966329999999999999999999999999999746999999999998731130799999999992797145999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 99998878999995887412998999999960788201012236886267999999999999999999999970588049 Q gi|254780341|r 161 ATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGV 240 (281) Q Consensus 161 a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~ 240 (281) ++++|++||++|+|..|+|+||+|++|+++++|+|+||+++||++|.|+|.|++|+||++|++++|+++|++||++|||+ T Consensus 213 AtviyAlpP~iR~T~lGir~Vp~~viEAa~~~G~T~~Q~L~kVeLPlA~P~ImaGvNQtimlaLsMvVIAa~IGagGLG~ 292 (354) T PRK10952 213 VTIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQ 292 (354) T ss_pred HHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 99999735899999999960888899999984999888989833602499999999999999999999999957886618 Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999997407898999999999999999999998742105 Q gi|254780341|r 241 PVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR 280 (281) Q Consensus 241 ~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~ 280 (281) +++++.++.|.+++++++++|+++|+++||++|...|++| T Consensus 293 ~Vl~gi~~~d~G~gl~aGl~IVlLAIiLDRiTqa~g~~~r 332 (354) T PRK10952 293 MVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSR 332 (354) T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9999986224368999999999999999998898562000 No 2 >COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism] Probab=100.00 E-value=0 Score=510.09 Aligned_cols=275 Identities=49% Similarity=0.780 Sum_probs=270.5 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 00667779999999999996459999999999999999999997207768999999999999841133028888775422 Q gi|254780341|r 5 IQAPIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLI 84 (281) Q Consensus 5 ~~~~ip~~~~i~~~~~wl~~~~~~~~~~i~~~l~~~l~~~~~~l~~~p~~~~i~~v~~l~~~~~~~~~~~~~~~~~~~~i 84 (281) .+.++|+++|+|+++||+.+|++++||.+++.++..+++.++.+...||+..++++++++|+.. +++.++++..++.++ T Consensus 7 ~~~~~p~~~~v~~~vdwl~~n~~~~f~~i~~~l~~~~~~~~~~L~~~pp~l~i~i~~~la~~~~-~~~~~i~t~~~l~~I 85 (290) T COG4176 7 DDAKIPIGSWVDEAVDWLTTNFGPLFDAISNPLEFLLDGLENLLLAVPPLLLILIVALLAWFAS-GLGLAIFTLLGLLLI 85 (290) T ss_pred CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH T ss_conf 2222787889999999999806689999999999999999999863589999999999999997-515999999999999 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 13484499999999999999788766677642101211232023503454420120210110000002101788999999 Q gi|254780341|r 85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIV 164 (281) Q Consensus 85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i 164 (281) ++.|+|+++|+|++++..++.+|+++|+|+||+++||++++++++|++|+|||+|+|+||+|++++||+|.+|+++++++ T Consensus 86 ~~~GlW~~tM~TLaLVl~a~~isivIGiPlGI~~ar~~~~~~i~~PiLDlMQTmP~FVYLIPav~lFGlG~VPg~iAtvI 165 (290) T COG4176 86 GNLGLWDQTMQTLALVLTATLISIVIGIPLGIWAARSPRVYRIVRPILDLMQTMPTFVYLIPAVMLFGLGNVPGLIATVI 165 (290) T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEE T ss_conf 98150899999999999999999998004899985368899999689999860542799999999907888763413656 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 88789999958874129989999999607882010122368862679999999999999999999999705880499999 Q gi|254780341|r 165 FSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLR 244 (281) Q Consensus 165 ~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~ 244 (281) |+.||.+|.|..|+|+||+|++|+++++|+|+||+++||++|.|+|+|++|+||++|++++|+|+|+|+|++|||+.+.+ T Consensus 166 fA~PP~IRlT~LGIrqVp~eliEA~~AFG~t~~Q~L~kVqLPlA~PtIMaGiNQtIMlALsMVVIAsMIGa~GLG~~Vl~ 245 (290) T COG4176 166 FAMPPMIRLTNLGIRQVPAELIEAADAFGATPRQKLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIGAGGLGQEVLR 245 (290) T ss_pred EECCCHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 53681587763241017899999999708988889787207430778998667999999999999998757877689999 Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 997407898999999999999999999998742105 Q gi|254780341|r 245 ALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR 280 (281) Q Consensus 245 a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~ 280 (281) +.++.|.+.++.++++||++|+++||++|...+|.| T Consensus 246 ~i~~ldig~g~~aGlaIVilAIiLDRitq~~~~~~~ 281 (290) T COG4176 246 GIQRLDIGLGFEAGLAIVILAIILDRLTQAFGRKAK 281 (290) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 988721377776308999999999999888454531 No 3 >TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein. Probab=100.00 E-value=0 Score=484.64 Aligned_cols=267 Identities=58% Similarity=0.963 Sum_probs=263.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC Q ss_conf 06677799999999999964599999999999999999999972077689999999999998411330288887754221 Q gi|254780341|r 6 QAPIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLII 85 (281) Q Consensus 6 ~~~ip~~~~i~~~~~wl~~~~~~~~~~i~~~l~~~l~~~~~~l~~~p~~~~i~~v~~l~~~~~~~~~~~~~~~~~~~~i~ 85 (281) |+++|+++|+|+++||+++|++++||.+++.+++.++..++.++..|||..+..+..+.|+..+|||.+.++..++.+++ T Consensus 1 ~~~iP~~~wid~~vdwl~~~~~~~f~~i~~~i~~~l~~~~~~l~~~ppw~~i~~~~~l~~~~~~g~rla~~~~~~l~~i~ 80 (267) T TIGR03416 1 DHKIPIGAWAKSFVDWLTDNGAFFFDALAFVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQRSWSLALFVALGLLLII 80 (267) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 99778899999999999997799999999999999999999984276899999999999999645899999999999999 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 34844999999999999997887666776421012112320235034544201202101100000021017889999998 Q gi|254780341|r 86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVF 165 (281) Q Consensus 86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~ 165 (281) ..|+|+++|+|++++.+++.+|+++|+|+|++++|||++++.++|++|.+||+|+|+|++|++++||+|+.|+++++++| T Consensus 81 ~~G~W~~am~Tlalv~~av~la~~iGiPlGI~~~~s~~~~~~l~pild~mQTiP~fvyLip~i~lfGiG~~~aiia~~iy 160 (267) T TIGR03416 81 NQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHRPWLYAIMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLISTVIF 160 (267) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 87158999999999999999999999999999981699999999999874315467999999999488705699999999 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 87899999588741299899999996078820101223688626799999999999999999999997058804999999 Q gi|254780341|r 166 SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRA 245 (281) Q Consensus 166 ~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~a 245 (281) +.||++|+|++|+|+||+|++|+++++|+|+||+++||++|+|+|+|++|+||+++++++|+++|+++|++|||+++.++ T Consensus 161 a~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IGa~GLG~~v~~~ 240 (267) T TIGR03416 161 AIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRA 240 (267) T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 98899999999998567689999998399898897994184158999999999999999999999996788536999999 Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 974078989999999999999999999 Q gi|254780341|r 246 LNTVDIGRGFESGLCIVILAIILDRLF 272 (281) Q Consensus 246 ~~~~~~~~~~~~~l~Iv~lai~lDri~ 272 (281) .++.|.+++++++++|+++|+++||++ T Consensus 241 l~~~~~g~~l~~gi~iv~lAiilDRlf 267 (267) T TIGR03416 241 LNTVNIALGFEAGLAIVVLAIVLDRIF 267 (267) T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 863356889999999999999997049 No 4 >COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism] Probab=100.00 E-value=1.4e-45 Score=293.10 Aligned_cols=192 Identities=30% Similarity=0.440 Sum_probs=186.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 84499999999999999788766677642101211232023503454420120210110000002101788999999887 Q gi|254780341|r 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSI 167 (281) Q Consensus 88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~ 167 (281) ++|+|...|+.++..|+.++.++|+++|+++++|+..++.++|+++++|++|+++++|..++|||+|+.+++...++.++ T Consensus 58 ~L~~~~~~Sl~rv~~Gf~la~~~gi~lgil~g~~~~~~~~l~P~i~~l~~iP~lA~~Pl~ilwfG~g~~s~i~i~~~~~f 137 (258) T COG0600 58 ELFQHLLASLLRVLLGFALAAVLGIPLGILMGLSRLLERLLDPLVQVLRPIPPLALAPLAILWFGIGETSKIVIAVLGAF 137 (258) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 59999999999999999999999999999998579999999699999931777999999999990796119999999999 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHH Q ss_conf 899999588741299899999996078820101223688626799999999999999999999997058-8049999999 Q gi|254780341|r 168 PTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPVLRAL 246 (281) Q Consensus 168 ~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-GLG~~i~~a~ 246 (281) +|++.||.+|+|++|++++|++|++|+|+||+++||++|+|+|+|++|+|++...++..++++|++|++ ||||++.++. T Consensus 138 fpi~int~~Gvr~v~~~~~~~ar~lgas~~~~l~~v~lP~AlP~i~tgLRia~g~aw~~~VvaE~l~a~~GLG~~i~~a~ 217 (258) T COG0600 138 FPILINTLDGVRSVDPDLLELARTLGASRWQILRKVILPAALPYIFTGLRIAIGLAWIGLVVAELLGASSGLGYLILDAR 217 (258) T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 99999999998718999999999809897778776205300789999999999999999999999705666879999999 Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 740789899999999999999999999874210 Q gi|254780341|r 247 NTVDIGRGFESGLCIVILAIILDRLFSIPDPRD 279 (281) Q Consensus 247 ~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~ 279 (281) +++|+++++++.+.+.+++.++|+..+..|||- T Consensus 218 ~~~~~~~v~a~i~~i~~lgll~d~~v~~~er~~ 250 (258) T COG0600 218 NNLQTDLVFAAILVIALLGLLLDRLVRLLERRL 250 (258) T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 851678999999999999999999999999998 No 5 >PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional Probab=100.00 E-value=1.4e-45 Score=292.75 Aligned_cols=196 Identities=17% Similarity=0.200 Sum_probs=189.9 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHH Q ss_conf 21348449999999999999978876667764210121123202350345442012021011000000210178899999 Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATI 163 (281) Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~ 163 (281) ..+..+|+|...|+.++..|+.++.++|+++|++++++++.++.++|+++++|++|++++.|.++.|||.|+.++++.++ T Consensus 53 ~~~g~l~~~~~~Tl~r~~~Gf~l~~~~Gi~lGil~g~~~~~~~~~~P~~~~l~~iP~ia~~Pl~ilwfG~g~~~~i~~i~ 132 (263) T PRK11365 53 SASGELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVA 132 (263) T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 54845999999999999999999999999999999986999987585999997657999999999997157420447886 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHH Q ss_conf 9887899999588741299899999996078820101223688626799999999999999999999997058-804999 Q gi|254780341|r 164 VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPV 242 (281) Q Consensus 164 i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-GLG~~i 242 (281) +.++||++.||.+|+|++|++++|++|++|+|+||+++||++|+++|++++|+|++...++.+++++|++|++ |||+++ T Consensus 133 ~~~~~pi~~nt~~Gv~~v~~~~~~~ar~~g~s~~~~l~~V~lP~alP~i~~glria~~~a~~~~v~aE~i~~~~GLG~~i 212 (263) T PRK11365 133 LGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLA 212 (263) T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 51042889999888754999999999872999999999989800688999999999999999999999984469888999 Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999740789899999999999999999999874210 Q gi|254780341|r 243 LRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD 279 (281) Q Consensus 243 ~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~ 279 (281) .++.+++|++.++++.+.+.++++++|++.+..|||. T Consensus 213 ~~a~~~~~~~~v~a~ii~i~llg~~l~~~~~~lerrl 249 (263) T PRK11365 213 MNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLW 249 (263) T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999870688999999999999999999999999993 No 6 >PRK10160 taurine transporter subunit; Provisional Probab=100.00 E-value=2.8e-45 Score=291.48 Aligned_cols=194 Identities=23% Similarity=0.361 Sum_probs=188.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 34844999999999999997887666776421012112320235034544201202101100000021017889999998 Q gi|254780341|r 86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVF 165 (281) Q Consensus 86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~ 165 (281) +..+|+|...|+.++..|+.+|.++|+++|+++++|+++++.++|+++.+|++|++++.|.+++|||+|+.++++.+++. T Consensus 73 ~g~l~~~~~~Tl~r~~~Gf~la~~~Gv~lGil~g~~~~~~~~l~P~l~~l~~iP~ial~Pl~ilwfG~g~~~~i~vv~l~ 152 (275) T PRK10160 73 DATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLA 152 (275) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHEEEHHH T ss_conf 75499999999999999999999999999999998799999999999999858899999999985357840061010287 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHH Q ss_conf 87899999588741299899999996078820101223688626799999999999999999999997058-80499999 Q gi|254780341|r 166 SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPVLR 244 (281) Q Consensus 166 ~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-GLG~~i~~ 244 (281) ++||+..||.+|+|++|++++|++|++|+|+||+++||++|+++|++++|+|++...++..++++|++|++ |||+++.+ T Consensus 153 ~~fpi~~nt~~Gvr~vd~~l~e~ar~~gas~~q~~~~V~lP~alP~i~~GlRi~~~~a~~~~v~aE~l~~~~GLG~~I~~ 232 (275) T PRK10160 153 IFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQS 232 (275) T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 54089999999997189999999998299999999998888789999999999999999999999998347987899999 Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99740789899999999999999999999874210 Q gi|254780341|r 245 ALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD 279 (281) Q Consensus 245 a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~ 279 (281) +.+++|++.++++.+.+.++++++|.+.+..|||. T Consensus 233 a~~~~~~~~~~a~ii~i~llg~~l~~~~~~lerrl 267 (275) T PRK10160 233 AGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRL 267 (275) T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99863789999999999999999999999999891 No 7 >COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism] Probab=100.00 E-value=1e-42 Score=275.55 Aligned_cols=195 Identities=31% Similarity=0.537 Sum_probs=189.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 34844999999999999997887666776421012112320235034544201202101100000021017889999998 Q gi|254780341|r 86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVF 165 (281) Q Consensus 86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~ 165 (281) ...+|+.+.+++.++..+..++.++|+|+|+++.|+++.+..+..+.++.||+||++.+..++..+|+|..|++++.++| T Consensus 21 ~~~~~~~~~~Hl~l~~~a~~~a~~igVplGIl~~r~~~~~~~v~~v~nv~qTiPslAllallipv~GiG~~PAiiAL~lY 100 (221) T COG1174 21 QDYLLALTLQHLLLVLLAVLIAILIGVPLGILVTRSRRLAGLVLGVANVLQTIPSLALLALLIPVLGIGLTPAIIALFLY 100 (221) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 87999999999999999999999999788999873488888999999998616089999999998568863899999999 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 87899999588741299899999996078820101223688626799999999999999999999997058804999999 Q gi|254780341|r 166 SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRA 245 (281) Q Consensus 166 ~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~a 245 (281) ++.|++|||++|+++||++++|+||.+|+|+||+++||++|.|+|.|++|+|.+..++..++.+|+++|++|||..+.++ T Consensus 101 sLLPIvrNT~~GL~~V~~~v~EAa~gmGMT~~Q~L~~VelPlAlPvIlaGIR~a~V~~ig~Atiaa~IGAGGLG~~I~~G 180 (221) T COG1174 101 SLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLALPVILAGIRTAVVINIGTATIAALIGAGGLGDLIFRG 180 (221) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 97199999999981498778999886599878798974120018999864899999999999999998277442899820 Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 97407898999999999999999999998742105 Q gi|254780341|r 246 LNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR 280 (281) Q Consensus 246 ~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~ 280 (281) .+.+|.+..+.+.+.+.++|++.|.+.++.||+.. T Consensus 181 l~~~n~~~il~Gai~valLAi~~d~ll~~~e~~l~ 215 (221) T COG1174 181 LNLNNTALILAGAIPVALLAILADVLLGLLERALT 215 (221) T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 40166799999699999999999999999999834 No 8 >PRK10782 DL-methionine transporter permease subunit; Provisional Probab=100.00 E-value=1e-31 Score=209.37 Aligned_cols=189 Identities=26% Similarity=0.358 Sum_probs=161.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHH------CCCCH Q ss_conf 49999999999999978876667764210--------12112320235034544201202101100000------02101 Q gi|254780341|r 90 WQETTETLSLVLVSTFISMFIGVPLGVLA--------AWYPRFYSIIRLFLDSMQTIPTFVYLIPALVL------FGLGM 155 (281) Q Consensus 90 W~~~~~Tl~~~~~~~~ia~~igiplGi~~--------~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~------fG~g~ 155 (281) ++...+|++++..++.++.++|+|+|+++ .+++++++..+++++++|++|.++++...+.+ .|.|. T Consensus 10 l~g~~~Tl~mt~~s~~~~~iiglplGi~l~~~~~~~~~~~~~l~~~~~~~i~~~R~iP~lv~l~~~~~~~~~~~g~~~g~ 89 (217) T PRK10782 10 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSAVVNIFRSIPFIILLVWMIPFTRVIVGTSIGL 89 (217) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 99999999999999999999999999999973202244346899999999999950689999999999999984466216 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 78899999988789999958874129989999999607882010122368862679999999999999999999999705 Q gi|254780341|r 156 VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS 235 (281) Q Consensus 156 ~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~ 235 (281) .+++++..+++.|++.+++++|+++||++.+|||+++|+|+||+++||.+|+|+|.++.+++......++...+++.+|+ T Consensus 90 ~aaiiaL~i~~~~~iar~~~~~i~~V~~g~~EAa~alG~s~~q~i~~viLPqAlp~ii~~~~~~~i~~i~~tsl~g~IG~ 169 (217) T PRK10782 90 QAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGA 169 (217) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 89999999999899999999999839987999999839898899485107921999999999999999999999999810 Q ss_pred CCHHHHH-HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8804999-999974078989999999999999999999987421 Q gi|254780341|r 236 NGLGVPV-LRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPR 278 (281) Q Consensus 236 ~GLG~~i-~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r 278 (281) +|||+.. ..+.+++|.+.+....+.++++..++|-+.++.+|| T Consensus 170 ggLG~~a~~~~~~~~~~~~~~~v~~l~~ilv~~i~~~~~~l~k~ 213 (217) T PRK10782 170 GGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRA 213 (217) T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 47899999999985151099999999999999999999999998 No 9 >COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] Probab=99.96 E-value=8.8e-29 Score=191.72 Aligned_cols=192 Identities=31% Similarity=0.494 Sum_probs=164.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCHHHHHCCCHHHHHHHHCCCCCH---HHHH-HHHCC-- Q ss_conf 484499999999999999788766677642101--------211232023503454420120210---1100-00002-- Q gi|254780341|r 87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAA--------WYPRFYSIIRLFLDSMQTIPTFVY---LIPA-LVLFG-- 152 (281) Q Consensus 87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~--------~~~~~~~~~~p~l~~~~~iP~~v~---l~p~-i~~fG-- 152 (281) ..+|..+.+|++++..++.++.++|+|+|+++. .++.+++.+..+.++++++|-+.. ++|+ ....| T Consensus 12 ~~l~~a~~eTlyMv~~s~~~~~~iGlplGvlL~~T~~g~i~~n~~~~~il~~ivNi~Rs~PFiILlv~liP~Tr~ivGTs 91 (222) T COG2011 12 QLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNILRSIPFIILLVALIPLTRLIVGTS 91 (222) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999999999987663436781788613008899999999998751209999999998899997265 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10178899999988789999958874129989999999607882010122368862679999999999999999999999 Q gi|254780341|r 153 LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTAL 232 (281) Q Consensus 153 ~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ 232 (281) +|..+++....+.+.|...|.++.++|+||+.++|||+++|+|+||+.+||.+|.|+|++..|+..+...-.....-|+. T Consensus 92 iG~~AAivPL~i~a~PF~ARlve~aL~EVd~GvIEAA~amGAs~~~II~kVlLpEa~p~li~g~Tvt~I~LIg~SAMAGa 171 (222) T COG2011 92 IGTTAAIVPLTIGAAPFVARLVESALREVDKGVIEAAQAMGASPWQIIRKVLLPEALPGLVSGITVTLISLIGYSAMAGA 171 (222) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 25304774167888889999999999744725899999849988888787326213678998899999999808888302 Q ss_pred HCCCCHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHH----HHHHHHHHHHH Q ss_conf 70588049999-999740789899999999999999----99999987421 Q gi|254780341|r 233 VGSNGLGVPVL-RALNTVDIGRGFESGLCIVILAII----LDRLFSIPDPR 278 (281) Q Consensus 233 ig~~GLG~~i~-~a~~~~~~~~~~~~~l~Iv~lai~----lDri~~~~~~r 278 (281) +|++|||..-. .++||+|.+.+..+.+.+.++--. =|++.+..+|| T Consensus 172 IGgGGLGdlAiryGY~Rf~~~Vm~~~viillilVq~iQ~~Gd~l~~r~~kr 222 (222) T COG2011 172 IGGGGLGDLAIRYGYQRFNTDVMVVAVVILLILVQLIQSLGDRLVRRLDKR 222 (222) T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 266733699999878855883157999999999999999989999997149 No 10 >TIGR01183 ntrB nitrate ABC transporter, permease protein; InterPro: IPR005889 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry comprises of the nitrate transport permease in bacteria, the gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016021 integral to membrane. Probab=99.95 E-value=8.4e-27 Score=179.82 Aligned_cols=188 Identities=21% Similarity=0.324 Sum_probs=179.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 48449999999999999978876667764210121123202350345442012021011000000210178899999988 Q gi|254780341|r 87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFS 166 (281) Q Consensus 87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~ 166 (281) .|+.-+...++.++..|+..+.+.|+.+|+..|.++...+.++|+.+.++++|+++|+|..+.-|--.+.++++.+++.+ T Consensus 13 ~Gl~~q~~~sl~rva~G~~~aa~~Gi~~G~~~G~~~~~~~~ldP~~q~lr~~~PlaW~Pi~l~~~~~~~~~aifvifita 92 (203) T TIGR01183 13 KGLFLQILASLTRVAVGYLLAAIVGIAVGILIGLSKLLNKALDPIFQVLRTVPPLAWLPIALAAFQDAQPAAIFVIFITA 92 (203) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEHHHHH T ss_conf 03799999999999999999999999999997468999874208999997515345788999998416863131124877 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHH Q ss_conf 789999958874129989999999607882010122368862679999999999999999999999705--880499999 Q gi|254780341|r 167 IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS--NGLGVPVLR 244 (281) Q Consensus 167 ~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~--~GLG~~i~~ 244 (281) .+|++.||..|++++|+|+.+.+|.+..|+.+.+.++.+|++.|++++|+|.+++++|--.+.+|++-+ .|+|+.+++ T Consensus 93 ~WPi~int~~G~~~~P~dy~nv~rvl~ls~~~y~~~~~~P~~~Py~f~Gl~i~~Gl~Wlai~aae~~~~~~~GiGffiWd 172 (203) T TIGR01183 93 IWPIIINTAVGVQQIPQDYNNVARVLKLSKSDYLLKVLLPAAVPYIFTGLRIAIGLSWLAIVAAEMLIGGIVGIGFFIWD 172 (203) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 98999876666763117789999999987888888777544456898658999999999999999986054301243222 Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 997407898999999999999999999998 Q gi|254780341|r 245 ALNTVDIGRGFESGLCIVILAIILDRLFSI 274 (281) Q Consensus 245 a~~~~~~~~~~~~~l~Iv~lai~lDri~~~ 274 (281) +.+.........+.+-+.+.++.+||+..+ T Consensus 173 ay~~~~~s~~ila~~y~G~vGl~l~~~v~~ 202 (203) T TIGR01183 173 AYNSGSVSEIILAIIYVGLVGLLLDRLVAF 202 (203) T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 230143047999999999999999999850 No 11 >pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices. Probab=99.94 E-value=4.6e-26 Score=175.36 Aligned_cols=170 Identities=32% Similarity=0.508 Sum_probs=150.9 Q ss_pred HHHHHHHCC--CCHHHHHCCCHHHHHHHHCCCCCHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 677642101--2112320235034544201202101100000-----021017889999998878999995887412998 Q gi|254780341|r 111 GVPLGVLAA--WYPRFYSIIRLFLDSMQTIPTFVYLIPALVL-----FGLGMVPGIVATIVFSIPTSVRLTRLGIISTPP 183 (281) Q Consensus 111 giplGi~~~--~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~-----fG~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~ 183 (281) |+|+|++++ ++++.++.++++.++++++|++++.+.++.+ ++.+..+++.....+..+++..+..++++++|+ T Consensus 1 Gv~lG~~~a~~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 80 (183) T pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80 (183) T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 98699999950785899999999999998349999999999984236678999999999999999999999999970689 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCHHHHHHHHHHHH Q ss_conf 99999996078820101223688626799999999999999999999997058-80499999997407898999999999 Q gi|254780341|r 184 ILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPVLRALNTVDIGRGFESGLCIV 262 (281) Q Consensus 184 ~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-GLG~~i~~a~~~~~~~~~~~~~l~Iv 262 (281) +++|+||+.|+|+||+++|+.+|+++|.+++++++++..++...+++|++++. |+|+++.++.++.|++......+.++ T Consensus 81 ~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~~GlG~~~~~a~~~~d~~~~~~~~~~~~ 160 (183) T pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAA 160 (183) T ss_pred HHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999998699843412992189899999999999999999999999999368967599999999770999999999999 Q ss_pred HHH----HHHHHHHHHHHHHCC Q ss_conf 999----999999998742105 Q gi|254780341|r 263 ILA----IILDRLFSIPDPRDR 280 (281) Q Consensus 263 ~la----i~lDri~~~~~~r~~ 280 (281) ++. .+.|.+.+..++|.| T Consensus 161 ~~~~~~~~~~d~l~~~ldpr~r 182 (183) T pfam00528 161 LILLLLNLLVDILQRLLDPRVR 182 (183) T ss_pred HHHHHHHHHHHHHHHHHCCCCC T ss_conf 9999999999999987391017 No 12 >COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism] Probab=99.91 E-value=6.9e-23 Score=156.25 Aligned_cols=194 Identities=23% Similarity=0.305 Sum_probs=179.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHH Q ss_conf 348449999999999999978876667764210121----1232023503454420120210110000002101788999 Q gi|254780341|r 86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY----PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVA 161 (281) Q Consensus 86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~----~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a 161 (281) ..+.|...++|+.+...|++++.++++|++++++++ ++.+..++-++++.+++|.+++..+.+..||.|..+++.| T Consensus 84 ~~~~~~~ll~Tl~ma~~gT~l~~i~aipl~flaa~n~~~~~~~~~~~r~ll~~iR~iP~iv~a~ifv~~~g~G~~agilA 163 (283) T COG3639 84 LPDILTALLQTLAIAFAGTLLAAILAIPLAFLAARNLSPKRWISFPVRRLLDFIRTIPELVWALLFVAAFGLGPFAGVLA 163 (283) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 31579999999999999999999999999999731258641289999999999976429999999999857854778999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 99988789999958874129989999999607882010122368862679999999999999999999999705880499 Q gi|254780341|r 162 TIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVP 241 (281) Q Consensus 162 ~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~ 241 (281) +.+++.-.+.....+.++++|++..|+.++.|+|+.|.++.=.+|+.+|...+=..-..-......++-+++|++|+|+. T Consensus 164 l~i~t~g~LgKl~~e~iE~id~~p~e~l~a~Gas~~~~~~~~vlPqv~p~f~s~~lyrfE~n~R~a~VlG~vGaGGIG~~ 243 (283) T COG3639 164 LGIYTIGILGKLYAEALESIDTGPGEALRATGASRLQLILFGVLPQIKPNFISYSLYRFESNIRAAAVLGLVGAGGIGQR 243 (283) T ss_pred HHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 99980219999999999845776789999836861453311200124188999999999987578899873255427799 Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999740789899999999999999999999874210 Q gi|254780341|r 242 VLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD 279 (281) Q Consensus 242 i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~ 279 (281) +..+.+..|++.+.+-.+.+.+.-+++|-+.++.+||. T Consensus 244 L~~~~~~~~~d~v~~i~l~i~v~V~~id~iS~~iR~r~ 281 (283) T COG3639 244 LMNSISLFQWDKVATIILPILVLVILIDLISAKIRKRL 281 (283) T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99887440475769999999999999999999999985 No 13 >PRK10971 sulfate/thiosulfate transporter subunit; Provisional Probab=99.89 E-value=2.5e-21 Score=146.90 Aligned_cols=197 Identities=22% Similarity=0.218 Sum_probs=157.7 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC--------- Q ss_conf 213484499999999999999788766677642101211-2320235034544201202101100000021--------- Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL--------- 153 (281) Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~--------- 153 (281) ..+..+|+...+|+.....++.++.++|+|+++.+.|++ +.++.++.++.....+|+++.......+||. T Consensus 51 f~dp~~~~al~nTl~ia~~~t~i~~vlG~~~A~~l~r~~f~gr~~l~~l~~lP~~iP~~V~g~~~~~lf~~~G~~~~~l~ 130 (277) T PRK10971 51 ITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLA 130 (277) T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 87988999999999999999999999999999999915887389999999999998999999999998466542667899 Q ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf --------017889999998878999995887412998999999960788201012236886267999999999999999 Q gi|254780341|r 154 --------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS 225 (281) Q Consensus 154 --------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~ 225 (281) +..+.+++.....+|.+++....+++++|+++.|||+++|||+||+++||.+|...|++.+|.-.+...++. T Consensus 131 ~~gi~~~~~~~giii~~~~~~~Pf~~~~~~a~l~~id~~leEAA~~lGAs~~~~f~~V~lPll~P~i~~g~ll~F~~s~~ 210 (277) T PRK10971 131 KFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLG 210 (277) T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 75964101299999999999989999987899984899999999864998657304103985799999999999999998 Q ss_pred HHHHHHHHCCC------CHHHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCC Q ss_conf 99999997058------80499999997407898999999999999----999999998742105 Q gi|254780341|r 226 MVVVTALVGSN------GLGVPVLRALNTVDIGRGFESGLCIVILA----IILDRLFSIPDPRDR 280 (281) Q Consensus 226 ~vvia~~ig~~------GLG~~i~~a~~~~~~~~~~~~~l~Iv~la----i~lDri~~~~~~r~~ 280 (281) ...+.-++|++ -+...++...++.|.+.+.+......++. ....++.++.+||.. T Consensus 211 ~f~~~~~l~G~~~~~t~tl~~~iy~~~~~~d~~~a~Als~ill~~sli~~~~~~~l~~R~~Rr~~ 275 (277) T PRK10971 211 EFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVV 275 (277) T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 76067500179988651499999999987688999999999999999999999999999987537 No 14 >TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). Probab=99.89 E-value=1.1e-20 Score=143.09 Aligned_cols=198 Identities=21% Similarity=0.339 Sum_probs=156.2 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHC---------- Q ss_conf 2213484499999999999999788766677642101211-23202350345442012021011000000---------- Q gi|254780341|r 83 LIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLF---------- 151 (281) Q Consensus 83 ~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~f---------- 151 (281) ...+.++|+...+|+.....++.+++++|++++.++.|.+ +.++.++.++.....+|+++.......+| T Consensus 84 ~f~~~~~~~al~nTl~~a~~~t~~~lvlG~~lA~~L~r~~f~g~~~l~~ll~lp~~lP~~v~a~a~~~l~~~~G~ln~~L 163 (312) T TIGR03226 84 FFASHDFRDALGNTLQIAFAAAAGALLLGSALAAILFFIPFPGAELIGRFLDLFIAFPSFLIAFAFIFIYGSAGLLNGAL 163 (312) T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 97796799999999999999999999999999999996237628999999999999889999999999983577077999 Q ss_pred ----CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ----21---------01788999999887899999588741299899999996078820101223688626799999999 Q gi|254780341|r 152 ----GL---------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQ 218 (281) Q Consensus 152 ----G~---------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~ 218 (281) |+ +..+.+++.+.+.+|.+++....+++++|+++.|||+++|||+||+++||.+|..+|++++|.-. T Consensus 164 ~~l~gl~~~p~~~l~s~~gVvla~i~~~~Pf~~l~~~a~l~~id~~l~EAA~~lGAs~~~~Fr~VtLPll~P~i~ag~lL 243 (312) T TIGR03226 164 MRAFAFDAPPLDFLFGAGGVILAEITFFTPFVMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGIL 243 (312) T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99628667745777409999999999989999999999999689789999988499988867874278468999999999 Q ss_pred HHHHHHHHHHHHHHHCCC---CHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999997058---80499999-997407898999999999999999999998742105 Q gi|254780341|r 219 TIMLSLSMVVVTALVGSN---GLGVPVLR-ALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR 280 (281) Q Consensus 219 ~~~~~l~~vvia~~ig~~---GLG~~i~~-a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~ 280 (281) +.+.++..-.+..++|++ =++..+++ ..+..|++.+-+..+...++.+.+-.+.++.+||.. T Consensus 244 ~Fi~~~~~F~~~~~lgg~~~~tl~~~Iy~~~~~~~d~~~AaAlavillv~~l~l~~l~r~~~rR~~ 309 (312) T TIGR03226 244 CFLLTLNEFGILLFIGAAGLITLPMAIYSKAILDIDLPAAAAGALIMIALSLALFALYRLAARRAG 309 (312) T ss_pred HHHHHHHHHCCEEEEECCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999775411344089970179999999987579899999999999999999999999987634 No 15 >PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional Probab=99.88 E-value=1.5e-20 Score=142.18 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=137.4 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC-------- Q ss_conf 2213484499999999999999788766677642101211-2320235034544201202101100000021-------- Q gi|254780341|r 83 LIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL-------- 153 (281) Q Consensus 83 ~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~-------- 153 (281) ...+.++|+...+|+.....++.+++++|++++.++.|.+ +.++.++.++.+-..+|+.+.......+||. T Consensus 56 ~l~dp~~~~al~~Tl~~a~~~~~i~lvlG~~lA~~l~r~~f~gr~~~~~l~~lP~~ip~vV~g~~~~~l~~~~G~l~~~L 135 (291) T PRK11602 56 NLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWL 135 (291) T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 98397899999999999999999999999999999992788608999999999886379999999999826443789999 Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---------01788999999887899999588741299899999996078820101223688626799999999999999 Q gi|254780341|r 154 ---------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSL 224 (281) Q Consensus 154 ---------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l 224 (281) +..+.+++.+....|.+.+....+++++|+++.|||+++|+|+||+++||.+|...|.+++|.-.+.+.++ T Consensus 136 ~~~~~~~~~s~~giil~~v~~~~Pf~~~~~~a~l~~i~~~l~EAA~~lGAs~wq~F~~VtLPll~P~i~~g~iL~f~~al 215 (291) T PRK11602 136 DEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAI 215 (291) T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 85583286778999999999999999999999998689589999987699987898986498309999999999999998 Q ss_pred HHHHHHHHHCCC------CHHHHHHHHHHHHCHHHHHHHHH Q ss_conf 999999997058------80499999997407898999999 Q gi|254780341|r 225 SMVVVTALVGSN------GLGVPVLRALNTVDIGRGFESGL 259 (281) Q Consensus 225 ~~vvia~~ig~~------GLG~~i~~a~~~~~~~~~~~~~l 259 (281) ..--...+++++ -+-..++...+..|......+.. T Consensus 216 ~~Fg~v~~l~G~~~g~T~t~~~~i~~~~~~~~~~~a~~~a~ 256 (291) T PRK11602 216 GEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAA 256 (291) T ss_pred HHCCCHHEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 75680431157998850106999999998126446999999 No 16 >PRK11268 pstA phosphate transporter permease subunit; Provisional Probab=99.88 E-value=3.5e-20 Score=139.97 Aligned_cols=194 Identities=18% Similarity=0.242 Sum_probs=143.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHCCCHHHHHHHHCCCCCHHHHHHH-----HCCCCHH Q ss_conf 1348449999999999999978876667764210121---1232023503454420120210110000-----0021017 Q gi|254780341|r 85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY---PRFYSIIRLFLDSMQTIPTFVYLIPALV-----LFGLGMV 156 (281) Q Consensus 85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~---~~~~~~~~p~l~~~~~iP~~v~l~p~i~-----~fG~g~~ 156 (281) ...|.++....|+..+..+.++++.+|+..|+++.++ ++..+.++...|.+..+||++|-..... +-+++.. T Consensus 75 ~~gGi~~aivGTl~~~~~a~lia~Pigi~~aIyL~Eya~~~~~~~~ir~~i~~LagiPSIV~Glfg~~~~v~~~~~~s~l 154 (292) T PRK11268 75 EGGGLANAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQMEHFSGW 154 (292) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88766999999999999999999999999999999976864399999999999842748999999999999852125578 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-- Q ss_conf 889999998878999995887412998999999960788201012236886267999999999999999999999970-- Q gi|254780341|r 157 PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVG-- 234 (281) Q Consensus 157 ~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig-- 234 (281) ++.++..+..+|.+++.|++++|+||++++|++.++|+||||..+||.+|+|+|+|++|+-.++.-+..-...--+.+ T Consensus 155 ag~l~LaimilP~i~~~teeaL~~VP~~lreaa~ALGatkw~ti~~VvlP~A~~GI~tgviLaiaRa~GETApll~ta~~ 234 (292) T PRK11268 155 AGVIALALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFTALS 234 (292) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999999999999599889999998799865762237607637799999999999999879999999833 Q ss_pred -----------CCCHHHHHHHHHHH-HCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf -----------58804999999974-078--989999999999999999999987421 Q gi|254780341|r 235 -----------SNGLGVPVLRALNT-VDI--GRGFESGLCIVILAIILDRLFSIPDPR 278 (281) Q Consensus 235 -----------~~GLG~~i~~a~~~-~~~--~~~~~~~l~Iv~lai~lDri~~~~~~r 278 (281) ..-|-..+++-.+. .+. ..+.++.+...++-+.+.-+.+...|| T Consensus 235 ~~~~~~~l~~p~~tLp~~Iy~~a~~p~~~~~~la~a~alvL~~~vL~lNi~ar~i~rr 292 (292) T PRK11268 235 NQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLLITLCVLLLNILARVVFAK 292 (292) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 2347899787301548999998049647799999999999999999999999998559 No 17 >PRK11275 pstC phosphate transporter permease subunit; Provisional Probab=99.88 E-value=5.4e-20 Score=138.83 Aligned_cols=195 Identities=17% Similarity=0.286 Sum_probs=144.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCHH-------HHHHH------- Q ss_conf 34844999999999999997887666776421012--112320235034544201202101-------10000------- Q gi|254780341|r 86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVYL-------IPALV------- 149 (281) Q Consensus 86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~l-------~p~i~------- 149 (281) ..|.++....|+.....+.+++..+|+..++++.+ .++.++.+++.+|.+..+|+.+|- .|... T Consensus 68 ~~Gi~~~i~GTl~~s~iAllia~Plgi~~Aiyl~eya~~~~~~~l~~~ielLagIPSVV~Gl~Gl~v~~p~~~~~~~~~~ 147 (319) T PRK11275 68 IYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPV 147 (319) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77829999999999999999999999999999999766858989999999982175899999999999999998754556 Q ss_pred -----------------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf -----------------002101788999999887899999588741299899999996078820101223688626799 Q gi|254780341|r 150 -----------------LFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQI 212 (281) Q Consensus 150 -----------------~fG~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i 212 (281) -+|.+..++.++..++.+|.+++.+++++++||++++|++.++|+||||+.+||.+|+|.|+| T Consensus 148 ~~~~~~~~~~~~~~~~~~~G~s~l~a~i~LaiMilP~i~s~s~eal~~VP~~~reaa~ALGatrw~ti~~VvlP~a~~GI 227 (319) T PRK11275 148 GNILSNIPIVGALFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGV 227 (319) T ss_pred HHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 54412104677761477644028999999999999999999999999688999999998399799999999999888689 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HCCC-C------------HHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999-7058-8------------049999999740----7898999999999999999999998 Q gi|254780341|r 213 VASLTQTIMLSLSMVVVTAL-VGSN-G------------LGVPVLRALNTV----DIGRGFESGLCIVILAIILDRLFSI 274 (281) Q Consensus 213 ~~Gi~~~~~~~l~~vvia~~-ig~~-G------------LG~~i~~a~~~~----~~~~~~~~~l~Iv~lai~lDri~~~ 274 (281) ++|+=.++.-++.-...--| +|.. . +-..+....... ++...+++++...++..++.-+.+. T Consensus 228 ~~gviLg~gRAlGETmaV~mv~Gn~~~~~~~~lf~p~~Tlts~Ia~~~~ea~~g~~~~al~a~glvLfvit~i~N~~a~~ 307 (319) T PRK11275 228 IGGVMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKL 307 (319) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999988999999927876689876456550899999996313577489999999999999999999999999 Q ss_pred HHHHCC Q ss_conf 742105 Q gi|254780341|r 275 PDPRDR 280 (281) Q Consensus 275 ~~~r~~ 280 (281) .-+|.| T Consensus 308 iv~R~~ 313 (319) T PRK11275 308 MIMRLA 313 (319) T ss_pred HHHHHH T ss_conf 999987 No 18 >COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Probab=99.88 E-value=4.6e-20 Score=139.26 Aligned_cols=195 Identities=25% Similarity=0.405 Sum_probs=150.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CH-HHHHCCCHHHHHHHHCCCCCH-------HHHHHHH-C--- Q ss_conf 34844999999999999997887666776421012--11-232023503454420120210-------1100000-0--- Q gi|254780341|r 86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW--YP-RFYSIIRLFLDSMQTIPTFVY-------LIPALVL-F--- 151 (281) Q Consensus 86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~-~~~~~~~p~l~~~~~iP~~v~-------l~p~i~~-f--- 151 (281) ..|.|+....|+.....+.++|+.+|+..++.+.. .| ++++.++|.+|++.++|+.+| +.|.+.- | T Consensus 74 ~~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgIPSVVYG~fgl~vl~P~l~~~~~~~ 153 (310) T COG0573 74 QYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLAPFLRDVFGPP 153 (310) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 55649999999999999999998788896888776358287888899999998169711778999999999999985220 Q ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf --------210178899999988789999958874129989999999607882010122368862679999999999999 Q gi|254780341|r 152 --------GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS 223 (281) Q Consensus 152 --------G~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~ 223 (281) |.+..++.+...++.+|.++..+.+.+++||++++|++.++|+||||..+||.+|++.|+|++|+-.+++-+ T Consensus 154 ~~~~~~~~g~~~L~a~ivL~IMIiP~i~Sls~da~~~VP~~lreas~aLGaTkweti~kVilpaa~~GIv~a~iLglgRA 233 (310) T COG0573 154 LGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALGATKWETIRKVILPAARSGIVGAVILGLGRA 233 (310) T ss_pred CHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 00103645520999999999999999999999999958799999998738871004336539866877999999998898 Q ss_pred HHHHHHHHHH-CC------------CCHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999997-05------------880499999997----407898999999999999999999998742105 Q gi|254780341|r 224 LSMVVVTALV-GS------------NGLGVPVLRALN----TVDIGRGFESGLCIVILAIILDRLFSIPDPRDR 280 (281) Q Consensus 224 l~~vvia~~i-g~------------~GLG~~i~~a~~----~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~ 280 (281) +.-...-.|+ |. .-+...+..... ..+..-.++.++...++..++.-+.+...||.| T Consensus 234 iGETmAV~mv~Gn~~~~~~slf~p~~Tits~ia~~~gea~~~~~~~aL~~~glvLfvitl~~n~~a~~i~~r~~ 307 (310) T COG0573 234 LGETMAVTMVIGNTARIPLSLFSPGTTLTSIIANEFGEASGGLHTSALFALGLVLFVITLLLNILARYIVRRRR 307 (310) T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 72899999996175557754368865499999998631231268999999999999999999999999976663 No 19 >COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Probab=99.88 E-value=8.4e-20 Score=137.69 Aligned_cols=139 Identities=31% Similarity=0.512 Sum_probs=121.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHCCCHHHHHHHHCCCCCHHHHHH----HHC--CCCHHH Q ss_conf 48449999999999999978876667764210121---123202350345442012021011000----000--210178 Q gi|254780341|r 87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY---PRFYSIIRLFLDSMQTIPTFVYLIPAL----VLF--GLGMVP 157 (281) Q Consensus 87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~---~~~~~~~~p~l~~~~~iP~~v~l~p~i----~~f--G~g~~~ 157 (281) .|.-+....|+.++..+.++++.+|+..|+++.++ .+..+.++-..|.+.++||++|-.... ..+ |.+..+ T Consensus 67 gGi~~Ai~GTl~~~~~~~li~~PiGv~aaIYL~EYa~~~~~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~la 146 (292) T COG0581 67 GGIGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSALA 146 (292) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 73699999999999999999998999999999997478729999999999880684499999999999999777617999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999998878999995887412998999999960788201012236886267999999999999999 Q gi|254780341|r 158 GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS 225 (281) Q Consensus 158 ~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~ 225 (281) +..+..+..+|.++|.|++++|+||++++|++.++|+||||+++||.+|+|+|+|++|+-.++.-+.. T Consensus 147 GaLaLall~LP~iirtteeaL~~VP~~~ReAs~aLGasKwqtI~~vvlP~A~pGIiTGviLaiaR~~G 214 (292) T COG0581 147 GALALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGIITGVILAIARAAG 214 (292) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999888999999999980899999999974984878978888971475899999999999987 No 20 >PRK09421 modB molybdate ABC transporter permease protein; Reviewed Probab=99.88 E-value=2.2e-20 Score=141.22 Aligned_cols=166 Identities=23% Similarity=0.325 Sum_probs=132.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCC----------- Q ss_conf 13484499999999999999788766677642101211-232023503454420120210110000002----------- Q gi|254780341|r 85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG----------- 152 (281) Q Consensus 85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG----------- 152 (281) .+.++|+...+|+.....++.++.++|+++++.+.|.+ +.++.++.++.+...+|+++........|| T Consensus 3 ~~p~~w~al~~Sl~~a~~s~~~~~~ig~~~A~~l~r~~~~~~~~l~~l~~lp~~~P~iv~~~~~~~~~~~~g~~~~~l~~ 82 (229) T PRK09421 3 LSPPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSVVHLPLVLPPVVTGYLLLISMGRRGFIGQWLYE 82 (229) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 98899999999999999999999999999999999613530899999999999989999999999971445852678999 Q ss_pred ---CC----HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---10----17889999998878999995887412998999999960788201012236886267999999999999999 Q gi|254780341|r 153 ---LG----MVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS 225 (281) Q Consensus 153 ---~g----~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~ 225 (281) +. ....+++..++.+|.+++....+++++|+++.|+|+++|+|+||+++||.+|.++|++++|.=.+...++. T Consensus 83 ~~gi~~~~~~~g~~l~~~~~~~P~~~~~~~~~l~~i~~~l~EAA~~lGAs~~~~f~~V~lPl~~P~i~~~~il~F~~s~~ 162 (229) T PRK09421 83 WFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLG 162 (229) T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 82822234599999999999999999999999985998999999885992646759989998999999999999999999 Q ss_pred HHHHHH-HHCC-----CCHHHHHHHHHHHHC Q ss_conf 999999-9705-----880499999997407 Q gi|254780341|r 226 MVVVTA-LVGS-----NGLGVPVLRALNTVD 250 (281) Q Consensus 226 ~vvia~-~ig~-----~GLG~~i~~a~~~~~ 250 (281) .....- +.+. +-+...++...++.+ T Consensus 163 ef~~~~~l~~~~p~~~~tl~~~iy~~~~~~~ 193 (229) T PRK09421 163 EFGATITFVSNIPGETQTIPSAMYTLIQTPG 193 (229) T ss_pred HHHHHHHHHCCCCCCCEEHHHHHHHHHHCCC T ss_conf 9769998954899860217999999987389 No 21 >PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed Probab=99.87 E-value=3.1e-20 Score=140.26 Aligned_cols=197 Identities=23% Similarity=0.290 Sum_probs=161.0 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHC---C--CCHHH Q ss_conf 213484499999999999999788766677642101211-23202350345442012021011000000---2--10178 Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLF---G--LGMVP 157 (281) Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~f---G--~g~~~ 157 (281) ..+.++|+...+|+.....++.++.++|.+.++..+|.+ +.++.++-.+.....+|.++...+....| | .|..+ T Consensus 51 f~~~~~~~~~~nSl~ia~~~~~~~~~lg~~~A~~l~r~~~~~~~~~~~l~~~p~~~P~~v~~i~l~~~~~~~g~~~~~~~ 130 (257) T PRK09500 51 MNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWS 130 (257) T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 87937999999999999999999999999999999752677456999999999997999999999999997351320999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC- Q ss_conf 8999999887899999588741299899999996078820101223688626799999999999999999999997058- Q gi|254780341|r 158 GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN- 236 (281) Q Consensus 158 ~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~- 236 (281) .+++.+.+.+|..++....+++++|+|+.|||+.+|||+||.++||.+|.++|++++|.=.+...++....+.-+++++ T Consensus 131 lil~~~~~~lP~~~~~i~~~l~~i~~~l~EAA~~lGAs~~~~f~~VilPl~~P~i~~~~il~F~~s~~ef~~~~~l~g~~ 210 (257) T PRK09500 131 LLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPS 210 (257) T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99888885150279999999971796999999872999879636312984799999999999999999999999752899 Q ss_pred --CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf --80499999997407898999999999999999999998742105 Q gi|254780341|r 237 --GLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR 280 (281) Q Consensus 237 --GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~ 280 (281) =+...+++..+..|.+...+......++.+++=-+.++..||++ T Consensus 211 ~~tlp~~i~~~~~~~~~~~~~Ala~il~~i~~~~~~l~~~l~r~~~ 256 (257) T PRK09500 211 YEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVILSQLLARDKT 256 (257) T ss_pred CEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 6028999999987378759999999999999999999999866547 No 22 >COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism] Probab=99.86 E-value=4.8e-20 Score=139.13 Aligned_cols=194 Identities=22% Similarity=0.315 Sum_probs=154.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHC-----CCCHHHH Q ss_conf 1348449999999999999978876667764210121-123202350345442012021011000000-----2101788 Q gi|254780341|r 85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLF-----GLGMVPG 158 (281) Q Consensus 85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~f-----G~g~~~~ 158 (281) .+.++|+...+|+.....+..++.++|++.++.+.|. .+.++.++.....--.+|.++..+-...+| ..|..+. T Consensus 59 ~~~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~i 138 (267) T COG1177 59 SDPRLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTI 138 (267) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 78489999999999999999999999999999999704026899999997424150999999999999986887529999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-- Q ss_conf 999999887899999588741299899999996078820101223688626799999999999999999999997058-- Q gi|254780341|r 159 IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-- 236 (281) Q Consensus 159 i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-- 236 (281) +++++.+++|.+++.....+++.|++++|||+++|||+||+++||.+|..+|+|++|.-.+...++...+++.+++++ T Consensus 139 vlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~gp~~ 218 (267) T COG1177 139 VLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAGPGF 218 (267) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC T ss_conf 99999998668999999999738967999998769988889899769752799999999999999867786311328998 Q ss_pred -CHHHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH Q ss_conf -80499999997407898999999999999----9999999987421 Q gi|254780341|r 237 -GLGVPVLRALNTVDIGRGFESGLCIVILA----IILDRLFSIPDPR 278 (281) Q Consensus 237 -GLG~~i~~a~~~~~~~~~~~~~l~Iv~la----i~lDri~~~~~~r 278 (281) -|..+++...++...+..-+....+..+. ....++.+..++| T Consensus 219 ~TLP~~i~s~~r~~~~P~i~Alstll~~~~~ll~~~~~~~~~~~~~~ 265 (267) T COG1177 219 TTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILLASRLLRRRARK 265 (267) T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 72189999986558981999999999999999999999986433321 No 23 >PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed Probab=99.86 E-value=5.1e-20 Score=138.96 Aligned_cols=196 Identities=18% Similarity=0.282 Sum_probs=147.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHC------------- Q ss_conf 348449999999999999978876667764210121-123202350345442012021011000000------------- Q gi|254780341|r 86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLF------------- 151 (281) Q Consensus 86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~f------------- 151 (281) +..+|+...+|+.....++.+++++|.|++.++.+. .+.++..+-.......+|+++.......++ T Consensus 58 ~~~~~~~l~nSl~~a~~~tvi~~~ig~~~A~~l~~~~~~~r~~~~~l~~~P~~~p~~v~~~~~~~~~~~~G~ln~~l~~l 137 (285) T PRK09497 58 DPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLGTKGYLNEFLLWL 137 (285) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC T ss_conf 38999999999999999999999999998886301675438999999999998799999999999814330788999981 Q ss_pred CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 21---------017889999998878999995887412998999999960788201012236886267999999999999 Q gi|254780341|r 152 GL---------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIML 222 (281) Q Consensus 152 G~---------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~ 222 (281) |. +..+.+++.+...+|.+++....+++++|+++.|||+.+|||+||+++||.+|..+|++.+|.-.+... T Consensus 138 g~~~~p~~~l~~~~~vii~~v~~~lPf~~l~l~a~l~~i~~~l~EAA~~lGAs~~~~F~~I~lPl~~Pgi~~~~il~fi~ 217 (285) T PRK09497 138 GVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLP 217 (285) T ss_pred CCCCCCHHHHCCHHHHHHHHHEEECHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEHHEEEHHHHHHHHHHHHHHHHH T ss_conf 57566235423498887875313120677437878840896899999875999789132022081089999999999999 Q ss_pred HHHHHHHHHHHCCCC---HHHHHHHH-HHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCC Q ss_conf 999999999970588---04999999-974078989999999----999999999999987421059 Q gi|254780341|r 223 SLSMVVVTALVGSNG---LGVPVLRA-LNTVDIGRGFESGLC----IVILAIILDRLFSIPDPRDRI 281 (281) Q Consensus 223 ~l~~vvia~~ig~~G---LG~~i~~a-~~~~~~~~~~~~~l~----Iv~lai~lDri~~~~~~r~~~ 281 (281) ++..-.+..+.|+++ ++..+++. .+..|.+.+-+..+. +.++..+..|..|..+||.++ T Consensus 218 s~~~F~~~~~lgG~~~~~l~~~i~~~~~~~~~~~~aaA~svil~~i~~~~~~i~~r~~k~~~kk~~~ 284 (285) T PRK09497 218 AMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKVEL 284 (285) T ss_pred HHHHHHEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC T ss_conf 9887621001048975529999999998706906999999999999999999999999995301416 No 24 >PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional Probab=99.86 E-value=1.2e-19 Score=136.80 Aligned_cols=196 Identities=18% Similarity=0.231 Sum_probs=139.1 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHH-------------H Q ss_conf 2134844999999999999997887666776421012112-3202350345442012021011000-------------0 Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPAL-------------V 149 (281) Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i-------------~ 149 (281) ..+..+|+...+|+.....++++|+++|.|+++.++|.+. .++.++-++..-.-+|.++-..--. . T Consensus 90 f~d~~y~~a~~nSL~iA~~sT~i~lliG~P~Ay~iar~~~~~r~~l~~lvilP~~~s~lVr~~aw~~iL~~~G~ln~~L~ 169 (317) T PRK10683 90 TDDPLYFDAYLQSLQVAAISTICCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLL 169 (317) T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 76978999999999999999999999999999999938861789999999999706799999999999731434878999 Q ss_pred HCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0021---------0178899999988789999958874129989999999607882010122368862679999999999 Q gi|254780341|r 150 LFGL---------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTI 220 (281) Q Consensus 150 ~fG~---------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~ 220 (281) .+|. ++.+.++..+...+|.++...+.+++++|+++.|||+++|||+||+++||.+|.++|+|++|.-.+. T Consensus 170 ~lGli~~pl~ll~t~~aViig~v~~~lPfmvL~l~a~L~~id~~L~EAA~~LGAs~~~~F~~VtLPL~~PGIiag~lLvF 249 (317) T PRK10683 170 WLGVIDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVF 249 (317) T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEEECCCHHHHHHHHHHHH T ss_conf 96044676322564589999999999999999999999858908999998769986554002320621899999999999 Q ss_pred HHHHHHHHHHHHHCCC---CHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999997058---804999999-9740789899999999999999999999874210 Q gi|254780341|r 221 MLSLSMVVVTALVGSN---GLGVPVLRA-LNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD 279 (281) Q Consensus 221 ~~~l~~vvia~~ig~~---GLG~~i~~a-~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~ 279 (281) ..++..-++.++.|++ =+|..+++. .++.|.+.+-+..++..++.++.--+.+..++|+ T Consensus 250 i~a~g~F~iP~lLGG~~~~~i~~~i~~~f~~~~dwp~aaAlavvLl~i~iv~~~~~~r~~~k~ 312 (317) T PRK10683 250 IPAVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKS 312 (317) T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999888776866429985629999999998746805899999999999999999999998874 No 25 >cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F Probab=99.85 E-value=1e-19 Score=137.17 Aligned_cols=160 Identities=28% Similarity=0.538 Sum_probs=133.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCC---------HHHHHHHHH Q ss_conf 9999999999978876667764210121-123202350345442012021011000000210---------178899999 Q gi|254780341|r 94 TETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG---------MVPGIVATI 163 (281) Q Consensus 94 ~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g---------~~~~i~a~~ 163 (281) .+|+.....+..++.++|+++|++++++ ++.++.++++.+..+.+|+++..+....+|+.. ..+.++... T Consensus 2 ~nSl~i~~~~~~i~~~ig~~~a~~~~~~~~~~~~~~~~~~~i~~~iP~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 81 (190) T cd06261 2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILAL 81 (190) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 87999999999999999999999999518508899999999999803999999999999841232214789999999999 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHH Q ss_conf 9887899999588741299899999996078820101223688626799999999999999999999997058---8049 Q gi|254780341|r 164 VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN---GLGV 240 (281) Q Consensus 164 i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~---GLG~ 240 (281) +...|...+....+++++|+|+.|+||++|+|+||+++|+.+|.++|.++++.......++....+.+++|++ +.+. T Consensus 82 ~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (190) T cd06261 82 LLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGT 161 (190) T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH T ss_conf 99999999999999983899999999986997346569987996399999999999999999999999996899996839 Q ss_pred HHHHHHH---HHCHHH Q ss_conf 9999997---407898 Q gi|254780341|r 241 PVLRALN---TVDIGR 253 (281) Q Consensus 241 ~i~~a~~---~~~~~~ 253 (281) ......+ ..|.+. T Consensus 162 ~~~~~~~~~~~~~~~~ 177 (190) T cd06261 162 GLLLIFAILFPGDLGV 177 (190) T ss_pred HHHHHHHHHHCCCHHH T ss_conf 9999999987578699 No 26 >PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional Probab=99.85 E-value=1.1e-19 Score=136.94 Aligned_cols=196 Identities=18% Similarity=0.246 Sum_probs=152.9 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCC--------- Q ss_conf 21348449999999999999978876667764210121--1232023503454420120210110000002--------- Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY--PRFYSIIRLFLDSMQTIPTFVYLIPALVLFG--------- 152 (281) Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~--~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG--------- 152 (281) ..+.++|+...+|+.....++.++.++|.+.++...|. .+.++.++.++..-..+|+++........|+ T Consensus 56 f~~~~~~~a~~~Sl~ia~~~t~i~~~lG~~~A~~l~r~~~~~g~~~~~~l~~~Pl~vP~iv~gl~l~~~f~~~g~~~g~~ 135 (281) T PRK10592 56 FRDDAMMSAVGLSLTIAACAATMAAILGTIAAVVMVRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALGHAIGWP 135 (281) T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 77978999999999999999999999999999999980553306999999998998678999999999999846322532 Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf --101788999999887899999588741299899999996078820101223688626799999999999999999999 Q gi|254780341|r 153 --LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVT 230 (281) Q Consensus 153 --~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia 230 (281) .|....+++.+.++.|.+.+....+++++|+++.|||+++|||+||.++||.+|..+|++++|.=.+...|+...++. T Consensus 136 ~~~~~~~i~i~~~~~~~P~~~~~i~a~l~~id~~leEAA~~LGAs~~~~f~~V~LPli~Pgiiag~il~F~~s~~ef~~~ 215 (281) T PRK10592 136 ADRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIA 215 (281) T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 00237899999999999999999999998589279999988199988883435417115989999999999999877788 Q ss_pred HHHCCC---CHHHHHHHHHHHHCHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHC Q ss_conf 997058---8049999999740789899999-99---9999999999999874210 Q gi|254780341|r 231 ALVGSN---GLGVPVLRALNTVDIGRGFESG-LC---IVILAIILDRLFSIPDPRD 279 (281) Q Consensus 231 ~~ig~~---GLG~~i~~a~~~~~~~~~~~~~-l~---Iv~lai~lDri~~~~~~r~ 279 (281) .++|++ -|...++...+....+..-+.. +. +.++.++..++.+.-+||+ T Consensus 216 ~~l~g~~~~TLpv~iy~~~~~~~~p~~~A~~~l~~~v~~~~~~ia~~l~~R~~k~r 271 (281) T PRK10592 216 SFVSGPGATTLPMLVFSSVRMGVNPEINALATLILGVVGIVGFIAWYLMARAEKQR 271 (281) T ss_pred HHEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 62108998456999999987179879999999999999999999999998889887 No 27 >COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism] Probab=99.84 E-value=7.9e-20 Score=137.83 Aligned_cols=189 Identities=24% Similarity=0.350 Sum_probs=149.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCC------------- Q ss_conf 484499999999999999788766677642101211-232023503454420120210110000002------------- Q gi|254780341|r 87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG------------- 152 (281) Q Consensus 87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG------------- 152 (281) ...|....-|+.....++++++.+|++++++++|.+ +..+.++.++...-.+|+.|.-..++..|| T Consensus 3 ~~~~~~l~LSlkvA~ist~~~l~lgi~~a~~Lar~~~~~k~ll~~lv~LPLVLPPtV~G~~LLi~fgr~g~iG~~l~~~~ 82 (225) T COG4149 3 PEELTALLLSLKVALISTLLLLPLGIALAYLLARRRFRGKSLLESLVLLPLVLPPVVLGFLLLVLFGRNGFIGQFLEDWF 82 (225) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHC T ss_conf 67888999999999999999999999999999725577630999999732368953899999999747770678999975 Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf -----101788999999887899999588741299899999996078820101223688626799999999999999999 Q gi|254780341|r 153 -----LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMV 227 (281) Q Consensus 153 -----~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~v 227 (281) ++...++++..++++|.+++....+++++|+++.|+|+++|+||||+++||.||.++|+|++|+- +++.- T Consensus 83 g~~~~Fs~~gavlAs~vvslPlmv~~~~~a~~~id~~le~aA~tlGas~~~vf~~i~LPLalpGIlag~i----LsFAr- 157 (225) T COG4149 83 GLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAARTLGASRWEVFFRITLPLALPGILAGVI----LSFAR- 157 (225) T ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEECCCCHHHHHHHHH----HHHHH- T ss_conf 9707984489999999998898999999999856845999999818880213100140221067999999----99999- Q ss_pred HHHHH-----HCC------CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999-----705------880499999997407898999999999999999999998742105 Q gi|254780341|r 228 VVTAL-----VGS------NGLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR 280 (281) Q Consensus 228 via~~-----ig~------~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~ 280 (281) ..+|+ +++ +-+--.++.+.|..|.+++....+..+.++++.=-+..+.+||++ T Consensus 158 alGEFGAtlm~aGNIpG~T~Tlp~aIY~~~q~g~~~~A~~l~li~v~is~~~L~~~~~l~~~~~ 221 (225) T COG4149 158 ALGEFGATLMFAGNIPGETQTLPLAIYTAVQAGNYALAHRLVLILVVISLLVLFVSEWLARRSS 221 (225) T ss_pred HHHCCCEEEEEECCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8620570798754788853110699999998187889999999999999999999999987642 No 28 >TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family describes PstC, which is homologous to PstA (IPR005672 from INTERPRO). In the Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016021 integral to membrane. Probab=99.84 E-value=2.8e-19 Score=134.57 Aligned_cols=188 Identities=26% Similarity=0.412 Sum_probs=142.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCH-------HHHHHHH-C----------- Q ss_conf 9999999999997887666776421012--11232023503454420120210-------1100000-0----------- Q gi|254780341|r 93 TTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVY-------LIPALVL-F----------- 151 (281) Q Consensus 93 ~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~-------l~p~i~~-f----------- 151 (281) ..-|+.-...+.++|+.+|+..++.+.+ .||+++.++|.+|++.++||.+| +.|.+-- | T Consensus 73 i~GTl~~~~~A~liA~P~~i~~Aif~~e~aP~~~~~~l~~~~ELLAgIPSVvYG~wG~~~l~P~l~~~~~~~~~~~~~~i 152 (317) T TIGR02138 73 IVGTLITSLIAILIAVPVGIGIAIFLSEIAPKRVKSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKDHFQPFLGSNFGWI 152 (317) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999999999999999999985251135699999999722359999999999999999998867865313532 Q ss_pred ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ------------21017889999998878999995887412998999999960788201012236886267999999999 Q gi|254780341|r 152 ------------GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT 219 (281) Q Consensus 152 ------------G~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~ 219 (281) |.|-.++.+...++.+|.++..++|.+|+||++++|++-++|+||||+.+||.+|++.|+|++|+=.+ T Consensus 153 P~~~~~~~~~~~G~~~L~a~~vL~IMIlPt~as~s~D~~~~VP~~~kea~~ALGAT~wetI~~v~lP~a~~GIv~a~~Lg 232 (317) T TIGR02138 153 PLFGQLFSGPPNGYGLLTAGIVLAIMILPTIASISRDALRAVPRSYKEASLALGATKWETIRKVILPAARSGIVGAVVLG 232 (317) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 32122368998316899999999999999999999999973556788898770686043355533200021899999999 Q ss_pred HHHHHHHHHHHHHHCCC--CHHH-HH---H----------------HHH--HHHCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999997058--8049-99---9----------------999--74078989999999999999999999987 Q gi|254780341|r 220 IMLSLSMVVVTALVGSN--GLGV-PV---L----------------RAL--NTVDIGRGFESGLCIVILAIILDRLFSIP 275 (281) Q Consensus 220 ~~~~l~~vvia~~ig~~--GLG~-~i---~----------------~a~--~~~~~~~~~~~~l~Iv~lai~lDri~~~~ 275 (281) ++-|+.-.+.-.|+.++ ++.. .. . ++. +.....-.++.++...++.+++--+.+.. T Consensus 233 lGRAlGETmAV~mv~Gn~p~~~~~~~~~~f~~~~~T~~~~Ia~~~g~a~~g~~~~~~aL~~~glvLfvitl~~n~~~~~i 312 (317) T TIGR02138 233 LGRALGETMAVAMVIGNAPSLNRPIPLNLFSPYGTTITSLIANEFGEASGGNSVHVSALFALGLVLFVITLLVNILARYI 312 (317) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999724323444412022335689999999850666688842689999999999999999999999998 Q ss_pred HHHCC Q ss_conf 42105 Q gi|254780341|r 276 DPRDR 280 (281) Q Consensus 276 ~~r~~ 280 (281) .||.| T Consensus 313 ~~~~~ 317 (317) T TIGR02138 313 VRRRK 317 (317) T ss_pred HHCCC T ss_conf 53069 No 29 >TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Probab=99.83 E-value=3.1e-18 Score=128.29 Aligned_cols=193 Identities=17% Similarity=0.237 Sum_probs=149.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH----HCCCHHHHHHHHCCCCCHHHHHHHHC-----CC--CH Q ss_conf 484499999999999999788766677642101211232----02350345442012021011000000-----21--01 Q gi|254780341|r 87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFY----SIIRLFLDSMQTIPTFVYLIPALVLF-----GL--GM 155 (281) Q Consensus 87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~----~~~~p~l~~~~~iP~~v~l~p~i~~f-----G~--g~ 155 (281) ...|+...+|+.....+..++.++|++.++...+.++-+ +.++-....-..+|..+...-.+..| +. +. T Consensus 64 ~~~~~a~~~Sl~va~~~a~~a~~lg~~~a~~l~~~~~~~~~~~~~l~~l~~lPl~vP~iv~gl~ll~~f~~~~~~l~~t~ 143 (272) T TIGR03255 64 GAAFDALAASLEIGFCAAAFALACGLGAALALALEGRKRQGVGALLDALFMLPNAIPSVSLGLAILIAFHAGPLDLNGSL 143 (272) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH T ss_conf 81689999999999999999999999999999986215554899999999989989999999999999995684425579 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 78899999988789999958874129989999999607882010122368862679999999999999999999999705 Q gi|254780341|r 156 VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS 235 (281) Q Consensus 156 ~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~ 235 (281) ...+++.++..+|...+....+++++|+++.|+|+++|+|+||.++||.+|...|++++|.-.+...++....+.-++++ T Consensus 144 ~~liiah~~~~lP~~~~~v~a~l~~id~~leeAA~~LGAs~~~~f~~V~LPli~pgilag~~l~F~~S~~ef~~s~~l~~ 223 (272) T TIGR03255 144 AIVLFAHFALILAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLLMPAIMAALALGFALSLGELGATLMIYP 223 (272) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC T ss_conf 99999999999999999999999737930999998869989999999987967999999999999999977615323418 Q ss_pred C---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 8---8049999999740789899999999999999999999874210 Q gi|254780341|r 236 N---GLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD 279 (281) Q Consensus 236 ~---GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~ 279 (281) + -+...+++..++.+.+...+.......+.++.=-+.+...||. T Consensus 224 ~~~~TLpv~i~~~~~~g~~~~aaAls~ili~~s~v~li~~~~~~~R~ 270 (272) T TIGR03255 224 PGFATLPIAIFGATDRGNIADAAALSILLLAASLLALIAIAAIAKRL 270 (272) T ss_pred CCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99724799999998767848899999999999999999999999763 No 30 >TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall. Probab=99.83 E-value=5.4e-20 Score=138.84 Aligned_cols=194 Identities=23% Similarity=0.348 Sum_probs=148.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHCCCHHHHHHHHCCCCCHHHHHH----------HHCCC Q ss_conf 4844999999999999997887666776421012---1123202350345442012021011000----------00021 Q gi|254780341|r 87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW---YPRFYSIIRLFLDSMQTIPTFVYLIPAL----------VLFGL 153 (281) Q Consensus 87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~---~~~~~~~~~p~l~~~~~iP~~v~l~p~i----------~~fG~ 153 (281) .|.++....|+.+++.+.++|+.+|+..|+++.+ .++..+.++-..|.+..+||+++-.... .-+|. T Consensus 57 GGi~~AivGT~~~~~~~~~ia~PlGi~~aiYL~EYa~~~~~~~~ir~~~~~LaG~PSIv~GLFg~~~fv~~~~i~l~~~~ 136 (302) T TIGR00974 57 GGIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYAKEGRFTKFIRFAVDVLAGVPSIVVGLFGYALFVKTLGIYLGGGF 136 (302) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 53367799999999999999999999988875530678940056878888752116999999999999977686452206 Q ss_pred CHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ Q ss_conf 0178899-999988789999958874129989999999607882010122368862679999999999999999------ Q gi|254780341|r 154 GMVPGIV-ATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSM------ 226 (281) Q Consensus 154 g~~~~i~-a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~------ 226 (281) +-.++-. +..+..+|.++|.|+|+++.||++++|++-++|+||||+++||.||+|+|+|++|+=.++.-+..- T Consensus 137 S~laG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~TG~iL~iaR~~GETAPLl~ 216 (302) T TIGR00974 137 SALAGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILTGIILSIARAAGETAPLLF 216 (302) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77879999999999999999989999724788889999726002113322441310368999999999999998999999 Q ss_pred -----H-HHHH----------------HHCC-CCHHHHHHHHHHH----HCHH----HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf -----9-9999----------------9705-8804999999974----0789----89999999999999999999987 Q gi|254780341|r 227 -----V-VVTA----------------LVGS-NGLGVPVLRALNT----VDIG----RGFESGLCIVILAIILDRLFSIP 275 (281) Q Consensus 227 -----v-via~----------------~ig~-~GLG~~i~~a~~~----~~~~----~~~~~~l~Iv~lai~lDri~~~~ 275 (281) . .... +.+. ..|...+++.... .+.. +..++.++..++-+.+--..+.. T Consensus 217 TA~~~~~~~~~~~~~N~~~~~p~~~d~l~~~~~~L~~~iY~~~~~~~~~~~~~~~~~~a~~aalvL~~~vl~~N~~a~~~ 296 (302) T TIGR00974 217 TAGGSSSFLLGNSVLNDLPKAPLGEDLLLSPPAALPVLIYNLASELANAPYSEARNELAWAAALVLIVLVLLLNLIARLL 296 (302) T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99988776410356677767777754225764136888887640146788426888999999999999999999999999 Q ss_pred HHHCC Q ss_conf 42105 Q gi|254780341|r 276 DPRDR 280 (281) Q Consensus 276 ~~r~~ 280 (281) .||.| T Consensus 297 ~~~~~ 301 (302) T TIGR00974 297 RRRFK 301 (302) T ss_pred HHHHC T ss_conf 97524 No 31 >TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein. Probab=99.82 E-value=7.1e-18 Score=126.10 Aligned_cols=194 Identities=15% Similarity=0.197 Sum_probs=138.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC---------C Q ss_conf 484499999999999999788766677642101211---2320235034544201202101100000021---------0 Q gi|254780341|r 87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP---RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL---------G 154 (281) Q Consensus 87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~---~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~---------g 154 (281) .+.|+...+|+.....+..++.++|++.++...|++ +.++.++-+.....++|..+...-.+..|.. | T Consensus 328 ~~~~~a~~nSl~la~~aa~i~~~l~~~~ay~i~r~r~~~~~~~~l~~l~~lp~aiPgiVlalg~i~~f~~~~~~l~~Lyg 407 (546) T TIGR03262 328 GGGWEAYKNSLRLAATTALIGTILVFGGAYLIEKTRGFGLLRGVLRFLAILPMAVPGLVLGLGYIFFFNAPTNPLNGLYG 407 (546) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 56899999999999999999999999999999982141267999999998535168999999999998522203678888 Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 178-8999999887899999588741299899999996078820101223688626799999999999999999999997 Q gi|254780341|r 155 MVP-GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV 233 (281) Q Consensus 155 ~~~-~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i 233 (281) ... -+++-++..+|...+....+++++|+++.|+|+++|+|+|++++||.+|...|++++|.-.....++....+.-+. T Consensus 408 T~~iLilay~vr~lp~~~~~i~a~l~qI~~~leeAA~~lGas~~~~~~rI~lPLl~p~ilag~~lvFi~~m~El~~tllL 487 (546) T TIGR03262 408 TMALLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFL 487 (546) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE T ss_conf 99999999999999998999999987489509999987597966672532078028999999999999999876878787 Q ss_pred C---CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCC Q ss_conf 0---58804999999974078989999999999999----99999998742105 Q gi|254780341|r 234 G---SNGLGVPVLRALNTVDIGRGFESGLCIVILAI----ILDRLFSIPDPRDR 280 (281) Q Consensus 234 g---~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai----~lDri~~~~~~r~~ 280 (281) . .+=++..+++..+..+++.+.+..+.++++.. +++++.++.+||.| T Consensus 488 ~~~~~~tl~~~i~~~~~~g~~~~Aaa~s~ilvli~~i~~~l~~~~~rr~~~r~~ 541 (546) T TIGR03262 488 YSPDTKLASVAILNMDDAGDIAPAAAMATLIVLTSAVAKLLFALASRRLLRRTQ 541 (546) T ss_pred CCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 399980299999998658775889999999999999999999999988446876 No 32 >COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Probab=99.82 E-value=3.1e-17 Score=122.26 Aligned_cols=179 Identities=28% Similarity=0.451 Sum_probs=139.7 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHC----------- Q ss_conf 213484499999999999999788766677642101211-23202350345442012021011000000----------- Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLF----------- 151 (281) Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~f----------- 151 (281) ..+..+|+...+|+.....++.++.++|++++.+..|++ +.++.++..+..--.+|+++-..-.+.+| T Consensus 49 l~~~~~~~~l~nTl~la~~~~~ls~~lG~~~A~l~~r~~fpGr~~l~~l~~lPl~iP~~V~a~~~~~l~G~~G~~~~l~~ 128 (540) T COG1178 49 LSDPYLWRVLANTLILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVALAWISLFGPSGPLAALLE 128 (540) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 61238999999999999999999999999999999986277179999999999888799999999999767634999998 Q ss_pred --C------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf --2------10178899999988789999958874129989999999607882010122368862679999999999999 Q gi|254780341|r 152 --G------LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS 223 (281) Q Consensus 152 --G------~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~ 223 (281) | +|....+++...+..|.+.+.+..+++++|++++|+||++|+++||.++||.+|.+.|+|.+|.-...+.+ T Consensus 129 ~~G~~~~~iyg~~Giil~~~~~~~P~~~l~~~~al~~i~~~~~EaAr~LGa~~~~~F~~V~lPllrPai~~~~~Lvf~~~ 208 (540) T COG1178 129 LLGFESPSIYGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAGALLVFMLC 208 (540) T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 74468766466899999999998259999999999838946999998759983228888678877789999999999999 Q ss_pred HHHHHHHHHHCCC--CHHHHHHHHHHHHCHHHHHHHHHHHHH Q ss_conf 9999999997058--804999999974078989999999999 Q gi|254780341|r 224 LSMVVVTALVGSN--GLGVPVLRALNTVDIGRGFESGLCIVI 263 (281) Q Consensus 224 l~~vvia~~ig~~--GLG~~i~~a~~~~~~~~~~~~~l~Iv~ 263 (281) +...-+-...|.+ -+-..|++.....+ +..-++.+++.. T Consensus 209 l~dFg~p~~LG~~~~Tl~t~IY~~~~~~~-~~~~Aa~la~ll 249 (540) T COG1178 209 LADFGTPLILGGGYTTLETAIYQAIMSSF-DLARAALLALLL 249 (540) T ss_pred HHHHHHHHHHCCCCCEEHHHHHHHHHHCC-CHHHHHHHHHHH T ss_conf 98644699976987332999999998458-825699999999 No 33 >PRK09433 thiP thiamine transporter membrane protein; Reviewed Probab=99.80 E-value=3.6e-17 Score=121.82 Aligned_cols=181 Identities=16% Similarity=0.223 Sum_probs=72.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCC-CC---HHH- Q ss_conf 844999999999999997887666776421012-----11232023503454420120210110000002-10---178- Q gi|254780341|r 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAW-----YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFG-LG---MVP- 157 (281) Q Consensus 88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~-----~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG-~g---~~~- 157 (281) .+|+...+|+.....+..+++.+|++++....+ .++.++.++-.......+|..+...-....|. .+ ..+ T Consensus 326 ~~~~a~~nSl~iA~~aa~la~~lal~la~~~~~~~~r~~~~~~~~l~~~~~lplaiPgiVlg~Gl~ll~~~~~~~~~~~~ 405 (536) T PRK09433 326 ALWQALWTSLRIALLAALLAVLLAMALLLSSRELRLRQKALAAQALELSGMLILAMPGLVLATGLFLLLRNFTDLPQSAL 405 (536) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHH T ss_conf 89999999999999999999999999999999999850106889999999988733299999999999862024568899 Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf --899999988789999958874129989999999607882010122368862679999999999999999999999705 Q gi|254780341|r 158 --GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS 235 (281) Q Consensus 158 --~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~ 235 (281) .+.+..+.++|...|....+++++|+++.|+++++|+++||+++||++|...|.+.+|.-.+...++....+..+.+. T Consensus 406 ~ivil~~~l~~lP~a~r~l~~~l~~i~~~le~aA~sLGas~~~~f~~I~lPll~p~i~~a~~l~F~~smgEl~a~~ll~~ 485 (536) T PRK09433 406 GIVILVNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLVEWRALRRPLAQAFAFACALSLGDFGVIALFGS 485 (536) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECC T ss_conf 99999999999999999999999970175999998869998789698539830999999999999999875370213339 Q ss_pred C---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH Q ss_conf 8---80499999997407898999999999999999 Q gi|254780341|r 236 N---GLGVPVLRALNTVDIGRGFESGLCIVILAIIL 268 (281) Q Consensus 236 ~---GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~l 268 (281) + -|..++++..+..+++.+.+..+.++++.... T Consensus 486 ~~~~TLp~~iy~~~~~~~~~~Aa~~allL~ll~~~~ 521 (536) T PRK09433 486 QDFRTLPYLLYQQLGSYRSQDAAVTALLLLLLCLLL 521 (536) T ss_pred CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 998618999999872767688999999999999999 No 34 >COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism] Probab=99.80 E-value=3.8e-17 Score=121.70 Aligned_cols=168 Identities=24% Similarity=0.392 Sum_probs=128.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCC-HHHHHH----------------H Q ss_conf 84499999999999999788766677642101211-23202350345442012021-011000----------------0 Q gi|254780341|r 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFV-YLIPAL----------------V 149 (281) Q Consensus 88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v-~l~p~i----------------~ 149 (281) .+|+-..+|+......+++|+++|.|.++++++++ +.+..+. .+-.+|-.. +++-.. . T Consensus 63 ~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~la~~~~~~r~~ll----~lvilPfwts~LiR~yawi~iL~~~G~iN~~L~ 138 (287) T COG1176 63 LYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLL----LLVILPFWTSLLIRTYAWIVILGRNGLINQALL 138 (287) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 8999999999999999999999999999999967737999999----999999989999999999999834771648899 Q ss_pred HCCCCH--------HHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 002101--------78899999988-789999958874129989999999607882010122368862679999999999 Q gi|254780341|r 150 LFGLGM--------VPGIVATIVFS-IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTI 220 (281) Q Consensus 150 ~fG~g~--------~~~i~a~~i~~-~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~ 220 (281) ..|+.+ ..+++...+|. +|.++...+.+++.+|++++|||+++|||+||.++||.+|+++|++.+|+-... T Consensus 139 ~lGl~~~p~~ll~~~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pGi~aG~~lVF 218 (287) T COG1176 139 ALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVF 218 (287) T ss_pred HCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHH T ss_conf 76887886798805336768999986599999999999839978999998759976547642032177189999999998 Q ss_pred HHHHHHHHHHHHHCCC---CHHHHHHHHHHH-HCHHHHHHHHH Q ss_conf 9999999999997058---804999999974-07898999999 Q gi|254780341|r 221 MLSLSMVVVTALVGSN---GLGVPVLRALNT-VDIGRGFESGL 259 (281) Q Consensus 221 ~~~l~~vvia~~ig~~---GLG~~i~~a~~~-~~~~~~~~~~l 259 (281) ..++...++-+++|++ =+|..+.+...+ .|.+.+-+..+ T Consensus 219 i~alG~fi~P~lLGG~~~~~ig~lI~~q~~~~~nwp~asA~sv 261 (287) T COG1176 219 IPALGSFVTPALLGGPKVLMIGNLIYQQFLSARNWPFASALAV 261 (287) T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 9775889988985697525399999999852058447899999 No 35 >PRK09494 glnP glutamine ABC transporter permease protein; Reviewed Probab=99.80 E-value=1.4e-17 Score=124.33 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=146.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCHHHHHHHHCCCCCHHHHHHH-----HCCCC---HHHHH Q ss_conf 449999999999999978876667764210-1211232023503454420120210110000-----00210---17889 Q gi|254780341|r 89 YWQETTETLSLVLVSTFISMFIGVPLGVLA-AWYPRFYSIIRLFLDSMQTIPTFVYLIPALV-----LFGLG---MVPGI 159 (281) Q Consensus 89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~-~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~-----~fG~g---~~~~i 159 (281) +++-...|+.....+..++.++|+.+|..- .+++..+...+-+.++++++|.++.+..... +.|+. ..+++ T Consensus 15 ll~Gl~~Tl~l~~~s~~~g~~lG~~~a~~r~~~~~~l~~~~~~yv~~~RgtPlLv~lf~~yfglp~l~~~i~~~~~~~~v 94 (219) T PRK09494 15 LLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAFNDLRIDPFSAAV 94 (219) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH T ss_conf 99999999999999999999999999999988968999999999999976489999999999899854677748999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 99999887899999588741299899999996078820101223688626799999999999999999999997058804 Q gi|254780341|r 160 VATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG 239 (281) Q Consensus 160 ~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG 239 (281) ++..+++-....-....|+++||+...|||+++|.|+||+++||.+|+|+...+-.+-......+....+++.+|...+- T Consensus 95 i~l~l~~~Ay~aEi~R~gi~sVp~GQ~EAA~alG~s~~q~~r~IilPQa~r~~lP~l~n~~i~liK~Tsl~s~Igv~El~ 174 (219) T PRK09494 95 VTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELT 174 (219) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999831879999988598988898964699879998878899999999987999999899999 Q ss_pred HHHHHH-HHHHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999999-974078989999-999999999999999987421059 Q gi|254780341|r 240 VPVLRA-LNTVDIGRGFES-GLCIVILAIILDRLFSIPDPRDRI 281 (281) Q Consensus 240 ~~i~~a-~~~~~~~~~~~~-~l~Iv~lai~lDri~~~~~~r~~~ 281 (281) +.-..- .++++.-+.+.. ++.=.++...++++.++.|||.|+ T Consensus 175 ~~a~~i~~~t~~~~e~~~~~a~iY~~l~~~l~~~~~~lErrl~i 218 (219) T PRK09494 175 RQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRMKI 218 (219) T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999997107189999999999999999999999999987714 No 36 >TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterised in Escherichia coli , Staphylococcus carnosus Rhodobacter capsulatus and Azotobacter vinlandii . Molybdate is chemically similar to sulphate, thiosulphate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulphate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulphate permease proteins and not included in this model.; GO: 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0016021 integral to membrane. Probab=99.79 E-value=1.1e-17 Score=124.89 Aligned_cols=179 Identities=25% Similarity=0.383 Sum_probs=141.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCC--H---------------- Q ss_conf 9999999999788766677642101211-23202350345442012021011000000210--1---------------- Q gi|254780341|r 95 ETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG--M---------------- 155 (281) Q Consensus 95 ~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g--~---------------- 155 (281) -|+.....++++.+.+|+++|.+++|++ +.+..++.++..--..||.|.-..+++.||.. . T Consensus 2 LSlk~A~~~Tl~~~~LGi~~A~~La~~~f~gK~~le~L~~LPLVLPPtV~Gf~LL~~fG~~~G~~G~l~~~~~~~Gl~Ft 81 (212) T TIGR02141 2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKSLLEALVTLPLVLPPTVLGFYLLLAFGRNSGPIGKLLELLGISGLVFT 81 (212) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHH T ss_conf 79999999999999999999999988617604544644432663563789999999880357407789886506852466 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- Q ss_conf -7889999998878999995887412998999999960788201012236886267999999999999999999999--- Q gi|254780341|r 156 -VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTA--- 231 (281) Q Consensus 156 -~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~--- 231 (281) ...++|.+++++|.+.+....+.+.+|+|++|+||++|+|++++++||.||++.|++++|+= ++++- .++| T Consensus 82 ~~g~vlAs~~VSfPl~v~~~~~a~~~~~~~~~~~ArtLGaS~~~~f~~v~LPL~~pG~l~G~v----L~FAR-~LGEFGA 156 (212) T TIGR02141 82 FAGAVLASVVVSFPLMVRTIRGAFEAVDPDLEEAARTLGASELRVFLKVTLPLAFPGLLAGAV----LSFAR-ALGEFGA 156 (212) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHHH T ss_conf 999999999999776899999999862712899998827878998999985732899999999----99997-5021134 Q ss_pred --HHCC------CCHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf --9705------8804999999974-078989999999999999999999987421 Q gi|254780341|r 232 --LVGS------NGLGVPVLRALNT-VDIGRGFESGLCIVILAIILDRLFSIPDPR 278 (281) Q Consensus 232 --~ig~------~GLG~~i~~a~~~-~~~~~~~~~~l~Iv~lai~lDri~~~~~~r 278 (281) |+|+ +=+=-.|+++.+. .|.+.+....+..+.++++.=-.++..+|| T Consensus 157 tlm~aGNIpGkT~T~plaIY~~v~~lg~~~~A~~l~l~ll~~s~~~ll~~~~~~~R 212 (212) T TIGR02141 157 TLMFAGNIPGKTRTIPLAIYDAVESLGDYEAAHLLSLVLLALSLIVLLLVELLNKR 212 (212) T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 43100469796301767788677057886789999999999999999999875059 No 37 >TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. These proteins represent a family of phosphonate uptake transporters., probably responsible for the transport of phosphonate across the inner membrane. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0005887 integral to plasma membrane. Probab=99.78 E-value=5.3e-18 Score=126.87 Aligned_cols=187 Identities=21% Similarity=0.297 Sum_probs=164.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 49999999999999978876667764210121----12320235034544201202101100000021017889999998 Q gi|254780341|r 90 WQETTETLSLVLVSTFISMFIGVPLGVLAAWY----PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVF 165 (281) Q Consensus 90 W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~----~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~ 165 (281) -.+..+|+..+..|+.+++++|+++|.+.++| +|++..++.+.|..|++|..+..-..+...|.|+.+++.|+.++ T Consensus 2 ~~~M~~T~~IA~~~T~~~V~l~~~l~ll~A~NL~Pn~W~~~~VRRLM~~~RA~~E~V~A~lF~~~~~LGP~~~~~A~~IH 81 (192) T TIGR01097 2 LTKMLVTLNIAVFSTILAVVLSIILGLLAAKNLVPNPWVRQIVRRLMDILRAINEVVIAGLFLVILSLGPIAAVLALFIH 81 (192) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 56899999999999999999999999986752588842104789999999776799999999999950518999999999 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 87899999588741299899999996078820101223688626799999999999999999999997058804999999 Q gi|254780341|r 166 SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRA 245 (281) Q Consensus 166 ~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~a 245 (281) +.-..-+...+.++++|++..|--|+-|||+.+..+.=.+|+.+|.+.+=.-.-+-....-.++-+++|+||+|..+..+ T Consensus 82 T~G~L~KLl~E~VE~~~~~P~EG~RA~GAN~~E~~~yG~~PQVlP~l~SY~L~RlE~NVR~~T~~G~VG~GGIG~~L~~~ 161 (192) T TIGR01097 82 TIGVLSKLLFEVVEAIDMKPVEGLRAVGANKLERVLYGVLPQVLPLLISYFLLRLEINVRAATVVGAVGAGGIGVLLRLA 161 (192) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 99899999999986158989766523330378899960102676889999999998865555653044787276899998 Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9740789899999999999999999999874 Q gi|254780341|r 246 LNTVDIGRGFESGLCIVILAIILDRLFSIPD 276 (281) Q Consensus 246 ~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~ 276 (281) .++++..+..+-.+.+..--..+|.+.++++ T Consensus 162 I~~~~~~~T~A~~~L~~~T~~~~D~lS~~LR 192 (192) T TIGR01097 162 IRQFQEAKTLALVLLLIVTVFLLDFLSARLR 192 (192) T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 6033068899999999999999999877409 No 38 >CHL00187 cysT sulfate transport protein; Provisional Probab=99.78 E-value=3.2e-17 Score=122.15 Aligned_cols=154 Identities=23% Similarity=0.289 Sum_probs=128.2 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC-------- Q ss_conf 2213484499999999999999788766677642101211-2320235034544201202101100000021-------- Q gi|254780341|r 83 LIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL-------- 153 (281) Q Consensus 83 ~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~-------- 153 (281) ...+...|+...+|+.....++.++.++|+|+++...|++ +.++.++.++.....+|+.+.....+..||. T Consensus 45 ~~~~~~~~~~~~~Sl~~s~~~t~i~~~ig~~~A~~l~r~~~~gk~~~~~l~~lP~~iP~~v~a~~~~~~f~~~G~~~~~l 124 (235) T CHL00187 45 IATEPIALSAYSLTVSMALIAALINGIFGLLIAWVLVRYNFPGKRFLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHIL 124 (235) T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 98599999999999999999999999999999999998437618999999999999789999999999964466176899 Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---------01788999999887899999588741299899999996078820101223688626799999999999999 Q gi|254780341|r 154 ---------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSL 224 (281) Q Consensus 154 ---------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l 224 (281) +....+++.+...+|.+.+....+++++|+|+.|||+++|+|+||+++||.+|..+|++++|.-.+.+.++ T Consensus 125 ~~~~~~~~~~~~giii~~~~~~~P~~~~~~~~~l~~i~~~leEAA~~lGAs~~~~f~~I~lPll~p~i~a~~~l~f~~~~ 204 (235) T CHL00187 125 SSLGIKIVFTKLGVLLAMIFVSLPFVVRTIQPVLQEIEKELEEAAWSLGASPWETFWKVIFPPLIPALLTGLALTFSRAI 204 (235) T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHH T ss_conf 97076512309999999999887999998999998602999999987399950411312178468999999999999999 Q ss_pred HHHHHHHHHCCC Q ss_conf 999999997058 Q gi|254780341|r 225 SMVVVTALVGSN 236 (281) Q Consensus 225 ~~vvia~~ig~~ 236 (281) .......++|++ T Consensus 205 ~eFg~~~~lgGn 216 (235) T CHL00187 205 GEYGSIVLISSN 216 (235) T ss_pred HHHHHHHEEECC T ss_conf 998789802568 No 39 >TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein. Probab=99.76 E-value=2.6e-16 Score=116.66 Aligned_cols=190 Identities=19% Similarity=0.263 Sum_probs=143.7 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC-------- Q ss_conf 2213484499999999999999788766677642101211-2320235034544201202101100000021-------- Q gi|254780341|r 83 LIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL-------- 153 (281) Q Consensus 83 ~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~-------- 153 (281) ...+.++|+...+|+......+.++.++|+|++.+..|++ +.++.++..+..-..+|+++.....+.+||. T Consensus 46 ~l~~~~~~~~l~nTl~l~~~~~~~~~~lg~~~A~~~~r~~~~gr~~~~~~~~lPl~~P~~v~a~~~~~l~~~~G~~~~~l 125 (546) T TIGR03262 46 YFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLL 125 (546) T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH T ss_conf 97896899999999999999999999999999999980556469999999999999999999999999983163789998 Q ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ------01788999999887899999588741299899999996078820101223688626799999999999999999 Q gi|254780341|r 154 ------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMV 227 (281) Q Consensus 154 ------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~v 227 (281) |....+++...+.+|.+...+..+++++|+++.|+||++|+|+||.++||.+|...|.+.+|.-...+.+++.- T Consensus 126 ~~~~iy~~~gii~~~~~~~~P~~~l~~~~al~~~d~~l~eaA~~lGa~~~~~f~~i~lPl~~P~i~~~~lLvf~~~l~~F 205 (546) T TIGR03262 126 GGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDF 205 (546) T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 63715479999999999999999999999997199899999987299988999994478657999999999999997533 Q ss_pred HHHHHHCCC--CHHHHHHHHH-HHHCHHHHHHHHHHHHHHH---HHHHHHH Q ss_conf 999997058--8049999999-7407898999999999999---9999999 Q gi|254780341|r 228 VVTALVGSN--GLGVPVLRAL-NTVDIGRGFESGLCIVILA---IILDRLF 272 (281) Q Consensus 228 via~~ig~~--GLG~~i~~a~-~~~~~~~~~~~~l~Iv~la---i~lDri~ 272 (281) -+..++|++ =+-..+++.. +..|.+.+.+..+...+++ +..+|.. T Consensus 206 g~p~ilG~~~~tltt~Iy~~~~~~~d~~~aa~ls~~ll~~~~~~~~~~~~~ 256 (546) T TIGR03262 206 GVPKVIGGDYNVLATDIYKQVIGQQNFPMGAVVGVLLLLPALLAFGIDRAI 256 (546) T ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 258884387111279999999627886899999999999999999999999 No 40 >PRK10352 nickel transporter permease NikB; Provisional Probab=99.75 E-value=1.2e-16 Score=118.68 Aligned_cols=193 Identities=21% Similarity=0.161 Sum_probs=154.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCC----------CCHH Q ss_conf 44999999999999997887666776421012--11232023503454420120210110000002----------1017 Q gi|254780341|r 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFG----------LGMV 156 (281) Q Consensus 89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG----------~g~~ 156 (281) .++..-.|+.+...+..++.++|+|+|++.+. .++.++.++.+..+..++|+|.....++.+|+ .+.. T Consensus 94 I~~~lp~Tl~L~~~a~~l~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~lli~~fa~~l~~~P~~g~~~~ 173 (314) T PRK10352 94 MLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGW 173 (314) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH T ss_conf 88763788999999999999998599999872079721013105899878731999999999999996476787677833 Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8----89999998878999995887412-998999999960788201012236886267999999999999999999999 Q gi|254780341|r 157 P----GIVATIVFSIPTSVRLTRLGIIS-TPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTA 231 (281) Q Consensus 157 ~----~i~a~~i~~~~pi~~~t~~gl~~-v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~ 231 (281) . -+++..+.......|.+.+.+.+ .++++++.||+-|.|++++++|..+|+|++.+.+.+-..+...++++++-| T Consensus 174 ~~liLP~l~l~l~~~a~~~r~~R~~~~e~l~~dyv~~ArakGls~~~i~~rh~lrnal~P~it~~~~~~~~ll~GavivE 253 (314) T PRK10352 174 QHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLSDRQVERRHILRNASLPMITAVGMHIGELIGGTMIIE 253 (314) T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE T ss_conf 65411199999999999999999999998632999999986989313608652874298899999999999847761001 Q ss_pred H-HCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC Q ss_conf 9-70588049999999740789899999999999----99999999987421059 Q gi|254780341|r 232 L-VGSNGLGVPVLRALNTVDIGRGFESGLCIVIL----AIILDRLFSIPDPRDRI 281 (281) Q Consensus 232 ~-ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~l----ai~lDri~~~~~~r~~~ 281 (281) - .+-+|+|++..++.++.|++......+.++++ -++.|-+....+.|.|. T Consensus 254 ~iF~~pGlG~ll~~Ai~~rD~p~v~g~~l~~~~~~v~~nli~Dily~~lDPRiR~ 308 (314) T PRK10352 254 NIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRR 308 (314) T ss_pred HHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 8754767599999999813889999999999999999999999999964863157 No 41 >COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones] Probab=99.75 E-value=1.3e-16 Score=118.42 Aligned_cols=189 Identities=25% Similarity=0.378 Sum_probs=142.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC---------- Q ss_conf 13484499999999999999788766677642101211-2320235034544201202101100000021---------- Q gi|254780341|r 85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL---------- 153 (281) Q Consensus 85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~---------- 153 (281) .+.+.++..-.|+.....+++++.++|+|+++.+.|.+ +.++.++.++|+--++|+.+.-+-+..+||- T Consensus 51 ~~~~~~~a~~~S~~~a~~atl~~~vfg~~~a~vL~R~~fpgk~lvdaivDlP~alP~~VaGiaLl~l~~~~g~~g~~~~~ 130 (274) T COG0555 51 TSPRVLAALKLTLLTAFAATLLNLVFGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGLLGSLLAP 130 (274) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCC T ss_conf 48989999999999999999999999989989854035884899999962761375489999999996678740355412 Q ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf -------0178899999988789999958874129989999999607882010122368862679999999999999999 Q gi|254780341|r 154 -------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSM 226 (281) Q Consensus 154 -------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~ 226 (281) .....+++....+.|.++|..+.+++++|+|+.|+|+++|+|+||+++||.+|.+.|.+++|.- ++++- T Consensus 131 ~gi~~~~t~~GVivA~~Fvs~Pf~vr~v~~~~~~id~~~EeaA~sLGas~~~tf~~V~lP~l~pall~G~~----LsfaR 206 (274) T COG0555 131 LGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTFRRVILPLLLPALLAGFI----LSFAR 206 (274) T ss_pred CCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEEHHHCHHHHHHHHH----HHHHH T ss_conf 47567646789999999970336899889999855688999998648985511142446413389999999----99999 Q ss_pred HHHHHH-----HC------CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH---HHHHHHHHHH Q ss_conf 999999-----70------5880499999997407898999999999999999---9999987421 Q gi|254780341|r 227 VVVTAL-----VG------SNGLGVPVLRALNTVDIGRGFESGLCIVILAIIL---DRLFSIPDPR 278 (281) Q Consensus 227 vvia~~-----ig------~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~l---Dri~~~~~~r 278 (281) . ++|+ ++ .+=+.-+++...+.+|++...+..+....+++++ -|..+...+| T Consensus 207 ~-igEfGavl~iAgn~p~~t~~~pl~Iy~~~~~~d~~~A~ais~vll~iS~~~l~~~r~~~~~~~r 271 (274) T COG0555 207 S-IGEFGAVLIIAGNTPYKTETLPLLIYTRLESYDLEAAAAISVVLLLISFILLLVIRLLQSRARR 271 (274) T ss_pred H-HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8-2454649998147778773038999999983793579999999999999999999999876420 No 42 >PRK09471 oppB oligopeptide transporter permease; Reviewed Probab=99.75 E-value=1.5e-16 Score=118.15 Aligned_cols=191 Identities=20% Similarity=0.261 Sum_probs=153.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC--------CH---- Q ss_conf 4999999999999997887666776421012--112320235034544201202101100000021--------01---- Q gi|254780341|r 90 WQETTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL--------GM---- 155 (281) Q Consensus 90 W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~--------g~---- 155 (281) .+..-.|+.+...+..++.++|+|+|+++++ .++.++.++....+.+++|+|.....++.+|+. |. T Consensus 91 ~~~lp~Tl~L~~~a~~i~~~lgi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~la~lli~iF~~~l~~~P~~g~~~~~ 170 (306) T PRK09471 91 ASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGA 170 (306) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH T ss_conf 98889999999999999999999999999983475161999999999999899999999988999721763778887520 Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ----78899999988789999958874129-9899999996078820101223688626799999999999999999999 Q gi|254780341|r 156 ----VPGIVATIVFSIPTSVRLTRLGIIST-PPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVT 230 (281) Q Consensus 156 ----~~~i~a~~i~~~~pi~~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia 230 (281) .-.+++..+.......|.+.+.+.++ ++++++.||+-|.+++++++|..+++|++.+++.+-..+...++++++. T Consensus 171 ~~~liLP~~~l~l~~~~~~~r~~R~~~~~~l~~dyV~~ArakGl~~~~i~~rh~lrnal~P~it~~~~~~~~ll~Gsviv 250 (306) T PRK09471 171 LKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVI 250 (306) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHH T ss_conf 78875369999999999999999999999987799999998699840073001298429999999999999984587121 Q ss_pred HH-HCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC Q ss_conf 99-70588049999999740789899999999999----9999999998742105 Q gi|254780341|r 231 AL-VGSNGLGVPVLRALNTVDIGRGFESGLCIVIL----AIILDRLFSIPDPRDR 280 (281) Q Consensus 231 ~~-ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~l----ai~lDri~~~~~~r~~ 280 (281) |- .+-+|+|++..++.++.|++......+.+.++ -++.|-+....+.|.| T Consensus 251 E~iF~~PGiG~l~~~Ai~~~D~p~v~g~~l~~a~~~i~~nll~Dil~~~lDPRiR 305 (306) T PRK09471 251 ETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305 (306) T ss_pred HHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 0986476759999999980498999999999999999999999999997297558 No 43 >COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Probab=99.74 E-value=4.5e-16 Score=115.25 Aligned_cols=188 Identities=24% Similarity=0.329 Sum_probs=148.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999999978876667764210121-12320235034544201202101100000021017889999998878999 Q gi|254780341|r 93 TTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSV 171 (281) Q Consensus 93 ~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi~ 171 (281) +-.|+...+.++.+++++|+.+|...|.. .++++.++.+.|.+.++|.+..++.+...+|.|....++++.+...|... T Consensus 85 ~r~SL~I~~~~~~~~~~iG~~lG~iaGy~gG~vD~ilmri~di~ls~P~lll~i~l~~~lg~~~~~iiial~i~~W~~~A 164 (289) T COG1173 85 ARISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRITDIFLAFPSLLLAILLVAILGPGLLNLILALALVGWPGYA 164 (289) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999880761999999999999976599999999999772489899999999439999 Q ss_pred HHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHH Q ss_conf 9958874129-98999999960788201012236886267999999999999999999999970------5880499999 Q gi|254780341|r 172 RLTRLGIIST-PPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVG------SNGLGVPVLR 244 (281) Q Consensus 172 ~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig------~~GLG~~i~~ 244 (281) |.+..-..++ ++|++|+||.+|+|++++++|..+|...|.++......+..+.....--++.| ...+|.++.+ T Consensus 165 R~vR~~vl~~k~~eyV~AAr~~G~~~~~Ii~rhIlPn~~~~iiv~~~l~~~~aIl~ea~LSFLGLG~~pp~pswG~ml~~ 244 (289) T COG1173 165 RIVRGQVLSLREREYVEAARALGASTLRIIFRHILPNVLPPLIVLATLDIGGAILAEAGLSFLGLGVQPPTPSWGTMLAE 244 (289) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH T ss_conf 99999999987768999999849992012498862302899999999999999999999999068899899989999999 Q ss_pred HHH---HHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCC Q ss_conf 997---4078989999999999999----99999998742105 Q gi|254780341|r 245 ALN---TVDIGRGFESGLCIVILAI----ILDRLFSIPDPRDR 280 (281) Q Consensus 245 a~~---~~~~~~~~~~~l~Iv~lai----~lDri~~~~~~r~~ 280 (281) +++ ..+.-..+..+++|+++.+ +-|.+-+..+.|.| T Consensus 245 ~~~~~~~~~~w~~l~Pgl~i~l~vl~fnllgdgLrd~~dpr~~ 287 (289) T COG1173 245 GRNYLLTGAWWLVLFPGLAILLTVLAFNLLGDGLRDALDPRLR 287 (289) T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC T ss_conf 9998870485999998999999999999999889987480102 No 44 >COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] Probab=99.74 E-value=5.5e-17 Score=120.76 Aligned_cols=187 Identities=21% Similarity=0.239 Sum_probs=152.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHH-CCCCHHHHH--H-HHHHHHHHH Q ss_conf 999999999997887666776421012112320235034544201202101100000-021017889--9-999988789 Q gi|254780341|r 94 TETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVL-FGLGMVPGI--V-ATIVFSIPT 169 (281) Q Consensus 94 ~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~-fG~g~~~~i--~-a~~i~~~~p 169 (281) +.|+.++.+=..++.++++++|+..+.++++++...|..+++.+.|+-.|.|.+.+. .+.+..+-+ . ..++.++.. T Consensus 320 l~~~lRV~vilals~~i~i~lGy~i~~~p~~e~i~~P~~Q~LaafPa~~~FPl~~aa~~~~i~~~ei~l~pL~~~gT~~Y 399 (523) T COG4986 320 LYDYLRVVVILALSFLISIFLGYSIALRPRVEGIGQPLIQFLAAFPAPIYFPLLFAAIKTFILTPEIWLSPLGFIGTFYY 399 (523) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 88999999999999999998657403151165541279999871892378889999999986074577746777667899 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHH Q ss_conf 99995887412998999999960788201012236886267999999999999999999999970-------58804999 Q gi|254780341|r 170 SVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVG-------SNGLGVPV 242 (281) Q Consensus 170 i~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig-------~~GLG~~i 242 (281) +..|+..|.+++|.|+.|++|.++...|..++++.+|...|++++|+-.+..-+|...+++|... +.|||.++ T Consensus 400 i~~n~iaG~ka~P~e~~e~akny~l~~w~k~r~iilP~tFPYlitG~~tt~ggaWna~iV~Ey~s~g~~~~v~~GlgkyI 479 (523) T COG4986 400 IFYNVIAGAKALPVEYFEAAKNYNLGGWAKWRRIILPGTFPYLITGLSTTIGGAWNALIVGEYWSWGHTLLVAHGLGKYI 479 (523) T ss_pred HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHEEEECCCCCHHHHHHHHHHHH T ss_conf 99999987652778999999970835599888875364229998747753046344002022002674266563279899 Q ss_pred HHHHHHHCHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHCC Q ss_conf 9999740789899999999999----999-9999998742105 Q gi|254780341|r 243 LRALNTVDIGRGFESGLCIVIL----AII-LDRLFSIPDPRDR 280 (281) Q Consensus 243 ~~a~~~~~~~~~~~~~l~Iv~l----ai~-lDri~~~~~~r~~ 280 (281) -.+.+..|+++...+.+...++ .+. -.|+...++||.+ T Consensus 480 a~aT~aGd~pr~~~g~~im~i~Vvv~n~~~wrRl~d~A~kr~~ 522 (523) T COG4986 480 AVATAAGDIPRALWGSFIMGIVVVVYNILFWRRLMDLARKRYV 522 (523) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9998568830688865655045557579999999999998722 No 45 >PRK11123 arginine transporter permease subunit ArtQ; Provisional Probab=99.74 E-value=8.3e-16 Score=113.66 Aligned_cols=187 Identities=14% Similarity=0.191 Sum_probs=137.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC---------------- Q ss_conf 9999999999999978876667764210-12112320235034544201202101100000021---------------- Q gi|254780341|r 91 QETTETLSLVLVSTFISMFIGVPLGVLA-AWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL---------------- 153 (281) Q Consensus 91 ~~~~~Tl~~~~~~~~ia~~igiplGi~~-~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~---------------- 153 (281) +-...|+.....+..++.++|+.+++.- .+++..+....-++++++.+|.++.+. ...||. T Consensus 9 ~G~~~Tl~l~~~a~~~g~~lG~~la~~r~s~~~~l~~~~~~yv~~~RgtP~lv~l~--~~yfg~p~l~~~l~~~~~~~~~ 86 (238) T PRK11123 9 SAAGMTVGLAVCALIVGLALAMFFAVWESAKWRPVAWPGTALVTLLRGLPEILVVL--FIYFGSSQLLLTLSDGFTLNLG 86 (238) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHHCCCCH T ss_conf 99999999999999999999999999998886889999999999991675999999--9999528988763100000100 Q ss_pred ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ----------------0178899999988789999958874129989999999607882010122368862679999999 Q gi|254780341|r 154 ----------------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLT 217 (281) Q Consensus 154 ----------------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~ 217 (281) ...+++++..++.-....-....|+++||+...|||+++|.|++|+++||.+|+|++..+-++- T Consensus 87 ~~~~~~~~~~~~~~~~~f~~avial~l~~~Ay~aEi~R~gi~sVp~GQ~EAa~alGms~~q~~r~IilPQa~r~~lP~l~ 166 (238) T PRK11123 87 FVQIPVQMDIENFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLG 166 (238) T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 11101001213456469999999999999999999999999839999999999849899999999998999999973899 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999705880499999-9974078989999999-9999999999999874210 Q gi|254780341|r 218 QTIMLSLSMVVVTALVGSNGLGVPVLR-ALNTVDIGRGFESGLC-IVILAIILDRLFSIPDPRD 279 (281) Q Consensus 218 ~~~~~~l~~vvia~~ig~~GLG~~i~~-a~~~~~~~~~~~~~l~-Iv~lai~lDri~~~~~~r~ 279 (281) .....-+.....+..+|...+=+.-.. +.++++.-+.+..... =.++...+.++.++.|||- T Consensus 167 n~~i~liK~TSL~s~Igv~El~~~a~~i~~~t~~~~e~y~~~a~iYlii~~~l~~~~~~lEkR~ 230 (238) T PRK11123 167 NQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIDLRF 230 (238) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999984999999899999999999971345699999999999999999999999999985 No 46 >PRK11122 artM arginine transporter permease subunit ArtM; Provisional Probab=99.74 E-value=7.9e-16 Score=113.76 Aligned_cols=185 Identities=16% Similarity=0.238 Sum_probs=137.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCC--------------- Q ss_conf 999999999999997887666776421-0121123202350345442012021011000000210--------------- Q gi|254780341|r 91 QETTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG--------------- 154 (281) Q Consensus 91 ~~~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g--------------- 154 (281) +-...|+...+.+..++.++|+.++.. ..+++..+....-+.++++++|.++.+. ...||.+ T Consensus 10 ~G~~~Tl~l~~~s~~~~~~lG~~la~~r~~~~~~l~~~~~~yv~~~Rg~PlLv~lf--~~yfg~~~~~~l~~~~~~~~~~ 87 (222) T PRK11122 10 KGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIF--LIYYGPGQFPWLQEYPWLWHLL 87 (222) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHHHHHHCCCHHHHHC T ss_conf 99999999999999999999999999998797789999999999995646999999--9998148887775030353202 Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---17889999998878999995887412998999999960788201012236886267999999999999999999999 Q gi|254780341|r 155 ---MVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTA 231 (281) Q Consensus 155 ---~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~ 231 (281) ..+++++..++.-....-....|+++||++..|||+++|.|+||++ ||.+|+|+...+-++-.-....+.....++ T Consensus 88 ~~~~~~~viaL~l~~~Ay~aEi~R~gi~sV~~GQ~EAA~slGls~~q~~-rIilPQa~r~~lP~l~n~~i~liK~TsL~s 166 (222) T PRK11122 88 SQPWLCAMLALALNSAAYSTQLFYGAIRAIPEGQWQSCSALGMSKKQTL-AILLPYAFKRALSSYSNEVVLVFKGTSLAY 166 (222) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2599999999999999999999999996099879999998698999999-989999999986688999999999849999 Q ss_pred HHCCCCHHHHHHHH-HHHHCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCC Q ss_conf 97058804999999-9740789899999999--9999999999998742105 Q gi|254780341|r 232 LVGSNGLGVPVLRA-LNTVDIGRGFESGLCI--VILAIILDRLFSIPDPRDR 280 (281) Q Consensus 232 ~ig~~GLG~~i~~a-~~~~~~~~~~~~~l~I--v~lai~lDri~~~~~~r~~ 280 (281) .+|...+=+.-..- .++++. ..+.. .++ .++...++++.++.|||.+ T Consensus 167 ~Igv~El~~~a~~i~~~t~~~-~~y~~-~a~~Y~~i~~~~~~~~~~lErR~~ 216 (222) T PRK11122 167 TITLMDVMGYSQLLYGRTYDV-MVFGA-AGIIYLVVNGLLTLLMRLIERKAL 216 (222) T ss_pred HHHHHHHHHHHHHHHHCCCHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 998999999999999741609-99999-999999999999999999999876 No 47 >PRK10914 dipeptide transporter permease DppB; Provisional Probab=99.73 E-value=5e-16 Score=114.99 Aligned_cols=190 Identities=22% Similarity=0.245 Sum_probs=150.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC--------C------- Q ss_conf 99999999999997887666776421012--112320235034544201202101100000021--------0------- Q gi|254780341|r 92 ETTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL--------G------- 154 (281) Q Consensus 92 ~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~--------g------- 154 (281) ..-.|+.+...+..++..+|+++|++++. .++.++.+..+..+..++|+|.....++.+|+. | T Consensus 95 ~lp~Tl~L~~~a~il~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP~F~lallli~if~~~l~~~P~~G~~~~~~~ 174 (339) T PRK10914 95 RFKATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVF 174 (339) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 27258999999999999999999999998527511136788898612306999999999999999574777676765312 Q ss_pred -------------------H-----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHCCCCHHHHHHHH Q ss_conf -------------------1-----------7889999998878999995887412-99899999996078820101223 Q gi|254780341|r 155 -------------------M-----------VPGIVATIVFSIPTSVRLTRLGIIS-TPPILKEAACAFGATPFQVFRKV 203 (281) Q Consensus 155 -------------------~-----------~~~i~a~~i~~~~pi~~~t~~gl~~-v~~~~~eaa~~~Gas~~q~l~~V 203 (281) + .--+++..+.......|.+.+.+.+ .++++++.||+-|.+++++++|. T Consensus 175 ~~~~~p~~g~~~~~~~~~g~~~~~~~~l~hliLP~l~L~l~~~a~~~r~~R~~~~~~l~~dyV~~ArakGl~~~~i~~~h 254 (339) T PRK10914 175 LDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVH 254 (339) T ss_pred CCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHH T ss_conf 46666655410011142045113788999999999999999999999999999999983499999998594933140498 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHHH Q ss_conf 68862679999999999999999999999-7058804999999974078989999999999----999999999987421 Q gi|254780341|r 204 ELPFAIPQIVASLTQTIMLSLSMVVVTAL-VGSNGLGVPVLRALNTVDIGRGFESGLCIVI----LAIILDRLFSIPDPR 278 (281) Q Consensus 204 ~lP~a~P~i~~Gi~~~~~~~l~~vvia~~-ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~----lai~lDri~~~~~~r 278 (281) .++.|++.+.+.+-..+..-++++++-|. .+-+|+|++..++.++.|++......+.+.+ .-++.|-+....+.| T Consensus 255 ~lrnal~P~it~~g~~~~~ll~GsvivE~vF~~pGiG~l~~~Ai~~rD~pvi~g~~l~~~~~~i~~nli~Dil~~~lDPR 334 (339) T PRK10914 255 ALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR 334 (339) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 39860998999999999999976999869867757699999999835889999999999999999999999999862840 Q ss_pred CCC Q ss_conf 059 Q gi|254780341|r 279 DRI 281 (281) Q Consensus 279 ~~~ 281 (281) .|. T Consensus 335 iR~ 337 (339) T PRK10914 335 IRH 337 (339) T ss_pred CCC T ss_conf 478 No 48 >COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Probab=99.73 E-value=8.9e-16 Score=113.47 Aligned_cols=193 Identities=25% Similarity=0.308 Sum_probs=153.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC--------CHH-- Q ss_conf 4499999999999999788766677642101--2112320235034544201202101100000021--------017-- Q gi|254780341|r 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAA--WYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL--------GMV-- 156 (281) Q Consensus 89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~--~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~--------g~~-- 156 (281) ..+..-.|+.+...+..++.++|+|+|+.++ ++++.++.++...-+..++|+|.....++.+|+. |.. T Consensus 91 I~~~lp~Tl~L~~~a~iis~~lgi~LG~~aa~~~~~~~D~~~~~~~~~~~siP~F~~~~lli~~f~~~l~~~P~~g~~~~ 170 (317) T COG0601 91 ILERLPATLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWLGLLLILLFSVKLGWLPVGGRGSA 170 (317) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 99884999999999999999999999999994489759999999999999602999999999999999676898887886 Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf --------------8899999988789999958874129-9899999996078820101223688626799999999999 Q gi|254780341|r 157 --------------PGIVATIVFSIPTSVRLTRLGIIST-PPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIM 221 (281) Q Consensus 157 --------------~~i~a~~i~~~~pi~~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~ 221 (281) --.++..+..+.-..|.+.+.+.++ ++|+++.||+-|.|++++++|..++.|+..+++..-..+. T Consensus 171 ~~~~~~~~~~~h~iLP~~~L~~~~~a~~~r~~R~~~~e~l~~dyV~~AraKGl~~~~i~~kH~lrNa~iP~vt~~~~~~~ 250 (317) T COG0601 171 GSWDSFLDALKHLILPALTLGLVSLAGIARLTRSSMLEVLNQDYVRTARAKGLSERRILFKHALRNALLPVITVLGLQLG 250 (317) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH T ss_conf 51567999999999999999999999999999999999986689999998799925103986337648889999999999 Q ss_pred HHHHHHHHHHH-HCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC Q ss_conf 99999999999-70588049999999740789899999999999----99999999987421059 Q gi|254780341|r 222 LSLSMVVVTAL-VGSNGLGVPVLRALNTVDIGRGFESGLCIVIL----AIILDRLFSIPDPRDRI 281 (281) Q Consensus 222 ~~l~~vvia~~-ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~l----ai~lDri~~~~~~r~~~ 281 (281) ..++++++.|- .+=+|+|++..+|.++.|++..+...+.+.++ -.+.|-+-...+.|.|. T Consensus 251 ~ll~GavivE~iF~~pGiG~l~~~Ai~~~D~p~i~g~~~~~~~~~i~~nli~Dily~~lDPRir~ 315 (317) T COG0601 251 GLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLVIALLVILGNLLVDILYALLDPRIRL 315 (317) T ss_pred HHHHCHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99846878735408778499999999824849999999999999999999999999964975668 No 49 >COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] Probab=99.73 E-value=1.4e-17 Score=124.23 Aligned_cols=175 Identities=22% Similarity=0.267 Sum_probs=134.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHC----C--CC-HHHHHHHHHH Q ss_conf 999999999999978876667764210121123202350345442012021011000000----2--10-1788999999 Q gi|254780341|r 92 ETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLF----G--LG-MVPGIVATIV 164 (281) Q Consensus 92 ~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~f----G--~g-~~~~i~a~~i 164 (281) ..+.|..+++.+..++++.|..++.++.||++.+++.-|.+|++|++|.+.+++..+.+| | .| +.++.++++. T Consensus 10 a~LaT~gRm~~ai~iSi~~~~~lAy~A~Ksk~~E~i~ip~ldVlqSVPVlgFfpi~l~~Fv~lfpG~lGvElAa~FlvFT 89 (523) T COG4986 10 ALLATAGRMLLAILISILTGWFLAYAAIKSKRFENIYIPVLDVLQSVPVLGFFPIVLIFFVYLFPGPLGVELAADFLVFT 89 (523) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 99999999999999999999999999985205676130499887408512010535544434347500389999999999 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HC---- Q ss_conf 88789999958874129989999999607882010122368862679999999999999999----999999--70---- Q gi|254780341|r 165 FSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSM----VVVTAL--VG---- 234 (281) Q Consensus 165 ~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~----vvia~~--ig---- 234 (281) ...+.+....++++|.||+|+.|+|+.++.|.|++++|+++|.|+|.|... ++++++. +++.|. +| T Consensus 90 s~aWNi~fs~YQsFkTvP~dl~Eva~~yrls~~~r~~rlyIPfa~Pgi~~N----l~~S~s~g~FfItaSEvitvG~~t~ 165 (523) T COG4986 90 SVAWNIWFSEYQSFKTVPSDLLEVARNYRLSFLLRMARLYIPFAMPGIAAN----LMPSMSDGFFFITASEVITVGIHTY 165 (523) T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHH----CCHHHCCCEEEEEEEEEEEECCEEE T ss_conf 999999999999872387899999987265899987870543112567984----6830228389999767899635047 Q ss_pred -CCCHHHHHHHHHHHHCHHHHH--HHHHHHHHHHHHHHH Q ss_conf -588049999999740789899--999999999999999 Q gi|254780341|r 235 -SNGLGVPVLRALNTVDIGRGF--ESGLCIVILAIILDR 270 (281) Q Consensus 235 -~~GLG~~i~~a~~~~~~~~~~--~~~l~Iv~lai~lDr 270 (281) ..|+|.++-......|+.... .+.+++++..+..|. T Consensus 166 ~lfGIGS~l~~~~a~~~~~~~~ig~ai~A~~i~il~y~l 204 (523) T COG4986 166 RLFGIGSLLDELLAIGQYNLAYIGLAILAMAIGILLYDL 204 (523) T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 704638899988740017889999999999999999999 No 50 >COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Probab=99.73 E-value=9.2e-16 Score=113.38 Aligned_cols=187 Identities=24% Similarity=0.371 Sum_probs=140.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHCCCC----------HH Q ss_conf 844999999999999997887666776421012112-3202350345442012021011000000210----------17 Q gi|254780341|r 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLFGLG----------MV 156 (281) Q Consensus 88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g----------~~ 156 (281) +.|+...+|+.....+..+++++|+++++...|.+. .++.++-.......+|..+...-.+..|..- .. T Consensus 330 ~~~~a~~nSl~~a~~aa~l~~~~~l~~a~~~~r~~~~~~~~~~~l~~l~~avPG~Vla~g~l~~~~~~~~~~~~~~~t~~ 409 (540) T COG1178 330 QFWQALLNSLLLALAAALLAVVLALLLAYAVRRLRSRLSRLLERLSMLPLAVPGVVLALGLLLLFRAPDGLLYQPLYTLL 409 (540) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHCCCHHHHH T ss_conf 89999999999999999999999999999999732348899999988786336999999999998512200003056899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- Q ss_conf 8899999988789999958874129989999999607882010122368862679999999999999999999999705- Q gi|254780341|r 157 PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS- 235 (281) Q Consensus 157 ~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~- 235 (281) -.+++-++..+|...|....+++++|+++.|+++++|+++||++++|.+|...|++.+|.-.....+.......-+.+. T Consensus 410 ilv~a~~~~~~p~a~r~~~a~l~qi~~~leeaa~sLG~~~~~~~~~I~lPll~p~l~~a~~l~F~~s~~Elsat~lL~~~ 489 (540) T COG1178 410 ILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSIGELSATLLLGSP 489 (540) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCC T ss_conf 99999999998899999999998779749999988599787798998787305889999999999997553768786389 Q ss_pred --CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH----HHHHHHH Q ss_conf --88049999999740789899999999999999----9999998 Q gi|254780341|r 236 --NGLGVPVLRALNTVDIGRGFESGLCIVILAII----LDRLFSI 274 (281) Q Consensus 236 --~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~----lDri~~~ 274 (281) +-++.++++..+..+++.+-+..+.++++.++ +||..+. T Consensus 490 ~~~TL~~~iy~~~~~~~~~~Aaa~a~il~~~~~~~~~~~~~~~~~ 534 (540) T COG1178 490 GTRTLTVYIYNLLSDGRYGDAAALALILLVVSLLLFLLLDRLGEG 534 (540) T ss_pred CCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 961099999998036116888999999999999999999996402 No 51 >COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Probab=99.73 E-value=1.3e-15 Score=112.45 Aligned_cols=193 Identities=23% Similarity=0.249 Sum_probs=142.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCCHHHHH----HHHCCC--C-HHHHH Q ss_conf 844999999999999997887666776421-012112320235034544201202101100----000021--0-17889 Q gi|254780341|r 88 GYWQETTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFVYLIPA----LVLFGL--G-MVPGI 159 (281) Q Consensus 88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~----i~~fG~--g-~~~~i 159 (281) .+|+-...|+.....+..++.++|+.+|+. .++++..+....-+++++|..|-++-+... ...+|+ + ..+++ T Consensus 17 ~ll~G~~~Tl~ls~~~~~~g~vlG~~la~~r~s~~~~l~~~~~~Yv~~~RgtPlLvqlf~~yfg~lp~~gi~~~~~~aav 96 (222) T COG0765 17 FLLKGLLVTLLLTLLSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIFRGTPLLVQLFFIYFGLLPLLGIELDPFTAAV 96 (222) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999999999999999999999999997784789999999887761741999999999985798446777999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 99999887899999588741299899999996078820101223688626799999999999999999999997058804 Q gi|254780341|r 160 VATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG 239 (281) Q Consensus 160 ~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG 239 (281) ++..+++-..+.-....|+++||+...|||+++|.|++|++++|.+|+|+..++-.+-.-...-+....+++.+|...|= T Consensus 97 ial~l~~~AY~aEi~R~GI~sV~kGQ~EAA~aLGls~~q~~r~IIlPQAlr~~lP~l~n~~i~liK~TSl~svIgv~EL~ 176 (222) T COG0765 97 IALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQTMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIGVVELT 176 (222) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999996188868999998599986686630023569986517689999999982999999899999 Q ss_pred HHHHH-HHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999-997407898999-999999999999999998742105 Q gi|254780341|r 240 VPVLR-ALNTVDIGRGFE-SGLCIVILAIILDRLFSIPDPRDR 280 (281) Q Consensus 240 ~~i~~-a~~~~~~~~~~~-~~l~Iv~lai~lDri~~~~~~r~~ 280 (281) +.-.. +.++++.-+.+. +++.=.++...+.++.++.|||.+ T Consensus 177 ~~a~~i~~~t~~~~e~~~~~a~iY~~l~~~ls~~~~~lErr~~ 219 (222) T COG0765 177 RAAQIIAARTFRPFEVYLLAALIYLILCLPLSLLSRRLERRLA 219 (222) T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999866517999999999999999999999999998852 No 52 >PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional Probab=99.73 E-value=1.1e-15 Score=112.96 Aligned_cols=188 Identities=23% Similarity=0.303 Sum_probs=145.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999999978876667764210121-12320235034544201202101100000021017889999998878999 Q gi|254780341|r 93 TTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSV 171 (281) Q Consensus 93 ~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi~ 171 (281) +-.|+...+.++.++.++|+.+|...|.. +++++.++-+.|++.++|++...+.+...+|.+....++++.+...|... T Consensus 93 ~r~sL~i~l~~~~i~~~iG~~lG~~aGy~gG~~D~il~ri~Dv~~aiP~lll~i~l~~~~g~~~~~~il~i~l~~w~~~a 172 (296) T PRK09881 93 SQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYV 172 (296) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999988881760766556777630158605777888765167516888999998799999 Q ss_pred HHHHH-HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHHH Q ss_conf 99588-74129989999999607882010122368862679999999999999999999999705------880499999 Q gi|254780341|r 172 RLTRL-GIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS------NGLGVPVLR 244 (281) Q Consensus 172 ~~t~~-gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~------~GLG~~i~~ 244 (281) |.+.. .++.-++|++|+||++|+|+|++++|..+|+..|.++.-.-..+..+.....--+++|- ...|.++.+ T Consensus 173 R~vR~~~l~i~~~~yV~AAr~~G~s~~~Ii~rhiLPni~~~liv~~~~~~~~aIl~ea~LsFLGlG~~pp~~sWG~mi~~ 252 (296) T PRK09881 173 RLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVAN 252 (296) T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH T ss_conf 99999999996349999999839886785414276661889999999999999999999999037899999859999999 Q ss_pred HHHHHC--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHCC Q ss_conf 997407--8989999999999999----99999998742105 Q gi|254780341|r 245 ALNTVD--IGRGFESGLCIVILAI----ILDRLFSIPDPRDR 280 (281) Q Consensus 245 a~~~~~--~~~~~~~~l~Iv~lai----~lDri~~~~~~r~~ 280 (281) +.+... .-..+..++++.++.+ +-|.+-+..+.|.| T Consensus 253 ~~~~~~~~~w~~~~Pg~~i~l~vl~~nllgdgLrd~ldPr~r 294 (296) T PRK09881 253 GRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAG 294 (296) T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 999998772999999999999999999999999998196557 No 53 >TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, This entry describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulphate ABC transporter; GO: 0015563 uptake transmembrane transporter activity, 0006810 transport, 0016020 membrane. Probab=99.72 E-value=3.1e-18 Score=128.28 Aligned_cols=184 Identities=20% Similarity=0.256 Sum_probs=149.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC-----------------CHH Q ss_conf 9999999999788766677642101211-2320235034544201202101100000021-----------------017 Q gi|254780341|r 95 ETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL-----------------GMV 156 (281) Q Consensus 95 ~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~-----------------g~~ 156 (281) .|+.+++++..+=.+.|+..+..+.|++ +.++.++.++|+--++|+-|.-.-++.++|- +.. T Consensus 73 lT~~~aliav~lN~vFG~~~AWvLtR~~FPGr~lLda~~DLPFAlspvVAGL~l~llYg~~Gw~G~~~~~fgiqI~F~~~ 152 (280) T TIGR00969 73 LTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWP 152 (280) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHEEEEEECCCCCCCCHHHHCCCEEEEECC T ss_conf 99999999999999999999999971269825899998621334250675330004535778511323017868998412 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH Q ss_conf 889999998878999995887412998999999960788201012236886267999999999999999----9999999 Q gi|254780341|r 157 PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS----MVVVTAL 232 (281) Q Consensus 157 ~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~----~vvia~~ 232 (281) ...+|.+-.++|.++|...==+++..+|..|||.++|||+||++|||.||.-.|+++.|+-++..-|+. .++|++= T Consensus 153 G~~lAmiFvs~PFVvRev~PVL~Elg~e~EEAA~tLGA~~WQtFwRV~LP~i~w~llyGv~Lt~aRAlGEFGaV~~vSgn 232 (280) T TIGR00969 153 GVALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGN 232 (280) T ss_pred CEEEEEEEECCCCEEEEECCCHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEECC T ss_conf 14666534216804543100134138557899986289983026787668872678886787655654301107899446 Q ss_pred H-CC-CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7-05-8804999999974078989999999999999999999987421 Q gi|254780341|r 233 V-GS-NGLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPR 278 (281) Q Consensus 233 i-g~-~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r 278 (281) + |. .=+--+|.+..+++|+...++++..+..++++.=-+.+..|.| T Consensus 233 i~gkt~~lplli~~~l~~Yd~~gA~~ia~vL~l~slv~L~~~~~Lq~R 280 (280) T TIGR00969 233 IPGKTLTLPLLIFERLEQYDYPGAYVIAAVLLLVSLVTLFLINLLQAR 280 (280) T ss_pred CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 886312015664447660360789999999999999999999985039 No 54 >TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents a clade of ABC porter genes with relatively weak homology compared to its neighbour clades, the molybdate (IPR006229 from INTERPRO) and sulphate (IPR005667 from INTERPRO) porters. Neighbour-Joining, PAM-distance phylogenetic trees support the separation of these clades in this way. Included in this group are the NifC genes of Clostridium pasteurianum and Pasteurella multocida, which are involved in the biosynthesis and/or control of nitrogenase. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within this group are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulphate porter. There is presently no experimental evidence to support annotations with this degree of specificity.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane. Probab=99.72 E-value=5.4e-16 Score=114.75 Aligned_cols=175 Identities=25% Similarity=0.423 Sum_probs=136.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC-CH------------ Q ss_conf 99999999999999788766677642101211--2320235034544201202101100000021-01------------ Q gi|254780341|r 91 QETTETLSLVLVSTFISMFIGVPLGVLAAWYP--RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL-GM------------ 155 (281) Q Consensus 91 ~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~--~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~-g~------------ 155 (281) +....++.-...+++++..+|+|.++.++|.+ +..|.+++++++--.+|+.|--+-+...||- |. T Consensus 21 ~al~lSl~Ts~~sl~l~~~~g~P~A~~lar~~n~pl~~~l~~ll~LP~VlPPlV~G~aLLl~FG~~g~lG~~l~~aGi~~ 100 (226) T TIGR01581 21 KALRLSLLTSLASLLLAVVLGIPTAYVLARVRNFPLKKLLDTLLDLPLVLPPLVAGIALLLLFGRLGLLGPYLEAAGIQV 100 (226) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCHHH T ss_conf 99999999999999999999988999998875068547789998665424665888999999720212689998644167 Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH Q ss_conf ----7889999998878999995887412998999999960788201012236886267999999999999999----99 Q gi|254780341|r 156 ----VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS----MV 227 (281) Q Consensus 156 ----~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~----~v 227 (281) .+.++|-.-.+.|..+|+-+.+.+++|+|+.|+||++|+++.|+++||.+|.+.|++++|.=.+..-|+. .. T Consensus 101 ~Fs~~gvvlAQ~FVa~p~~vr~~r~~f~~v~~~ye~va~~lG~g~~~t~~~v~lPl~~~~ll~G~vLafaRalGEFGATL 180 (226) T TIGR01581 101 IFSTLGVVLAQTFVASPYLVRVARSTFESVDPDYEDVARSLGAGPLETFRKVTLPLARPGLLAGLVLAFARALGEFGATL 180 (226) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88889999999999999999999976730383489999880787226788875775336888879999999756567899 Q ss_pred HHH-HHHC-CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH Q ss_conf 999-9970-5880499999997407898999999999999 Q gi|254780341|r 228 VVT-ALVG-SNGLGVPVLRALNTVDIGRGFESGLCIVILA 265 (281) Q Consensus 228 via-~~ig-~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~la 265 (281) +.| +..| ++-+=-.++.+.+.-|.+-.....+...+++ T Consensus 181 ~~AG~~~g~TrTlPl~iY~~~~~d~~~~aV~~a~~Ll~ia 220 (226) T TIGR01581 181 MFAGSLQGKTRTLPLAIYLNIESDDIEAAVALAVLLLVIA 220 (226) T ss_pred HHHCCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 9843677753012788864574177327999999999999 No 55 >PRK10913 dipeptide transporter; Provisional Probab=99.72 E-value=1.8e-15 Score=111.56 Aligned_cols=188 Identities=19% Similarity=0.267 Sum_probs=145.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999999978876667764210121-12320235034544201202101100000021017889999998878999 Q gi|254780341|r 93 TTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSV 171 (281) Q Consensus 93 ~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi~ 171 (281) +-.|+...+.++.++.++|+.+|...|.+ +++++.++.+.|++.++|++..++.+...+|.+....++++.+.+.|... T Consensus 98 ~r~Sl~ial~~~~i~~~iG~~iG~iaGy~gG~vD~~i~r~~di~~aiP~lll~l~l~~~~g~~~~~~~lal~~~~w~~~a 177 (300) T PRK10913 98 ARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYV 177 (300) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999803884078887776666068848776875530487468999999999899999 Q ss_pred HHHHHHHHC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHHH Q ss_conf 995887412-9989999999607882010122368862679999999999999999999999705------880499999 Q gi|254780341|r 172 RLTRLGIIS-TPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS------NGLGVPVLR 244 (281) Q Consensus 172 ~~t~~gl~~-v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~------~GLG~~i~~ 244 (281) |.+..-..+ -++|++|+||.+|+|+|++++|..+|+.+|.++.-....+..+.....--+++|- ...|.++.+ T Consensus 178 R~vR~~vl~~~~~~yV~AAr~~G~s~~rIi~~hIlPnv~~~iiv~~~l~~~~aIl~ea~LsFLGlG~~pp~~sWG~ml~~ 257 (300) T PRK10913 178 RLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSD 257 (300) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH T ss_conf 99999999986158999999849997478643342665889999999999999999999999247899998839999999 Q ss_pred HHHHHC--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHCC Q ss_conf 997407--898999999999999----999999998742105 Q gi|254780341|r 245 ALNTVD--IGRGFESGLCIVILA----IILDRLFSIPDPRDR 280 (281) Q Consensus 245 a~~~~~--~~~~~~~~l~Iv~la----i~lDri~~~~~~r~~ 280 (281) +++..+ .-..+..+++++++. ++-|.+-+..+.|.| T Consensus 258 ~~~~~~~~pw~~~~Pg~~i~l~vl~~nllgdgLrdaldPrlr 299 (300) T PRK10913 258 VLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLK 299 (300) T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 999998483999999999999999999999999987191017 No 56 >PRK09433 thiP thiamine transporter membrane protein; Reviewed Probab=99.71 E-value=8.2e-15 Score=107.66 Aligned_cols=192 Identities=19% Similarity=0.329 Sum_probs=141.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCC----------- Q ss_conf 13484499999999999999788766677642101211-232023503454420120210110000002----------- Q gi|254780341|r 85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG----------- 152 (281) Q Consensus 85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG----------- 152 (281) .+..+|+-.-.|+.....++++++++|+|++..+.|++ +.++.++-.+..--.+|+++...-.+.+|| T Consensus 48 ~d~~~~~~~~~t~~~a~~st~ls~~lg~~~A~~l~r~~f~gr~~l~~l~~lp~~~P~~v~a~~~~~~~g~~G~l~~~l~~ 127 (536) T PRK09433 48 QDSYLWHVVRFSFWQAFLSALLSVLLAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLASLLQS 127 (536) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 68889999999999999999999999999999999558734999999999998769999999999998216449999998 Q ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---------10178899999988789999958874129989999999607882010122368862679999999999999 Q gi|254780341|r 153 ---------LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS 223 (281) Q Consensus 153 ---------~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~ 223 (281) +|....+++.+.+.+|...+....+++++|+++.|+|+++|+|+||.++||++|...|.+.+|.-...+.| T Consensus 128 ~g~~~~~~iyg~~gil~a~~~~~~P~~~~~~~~~l~~i~~~~~e~A~~LG~~~~~~f~~v~lP~~~pai~~~~~LVF~~~ 207 (536) T PRK09433 128 LGLEWPFSIYGLQGILLAHVFFNLPLATRLLLQSLESIPSEQRQLAAQLGMRGWQFFRLVEWPWLRRQLPPVAALIFMLC 207 (536) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 28877864012999999999999999999999999819999999998759898688886348988788999999999999 Q ss_pred HHHHHHHHHHCCC----CHHHHHHHHHH-HHCHHHHHHHHHHHH--HHHHHHHHHHHHHHHH Q ss_conf 9999999997058----80499999997-407898999999999--9999999999987421 Q gi|254780341|r 224 LSMVVVTALVGSN----GLGVPVLRALN-TVDIGRGFESGLCIV--ILAIILDRLFSIPDPR 278 (281) Q Consensus 224 l~~vvia~~ig~~----GLG~~i~~a~~-~~~~~~~~~~~l~Iv--~lai~lDri~~~~~~r 278 (281) ++.--+....|++ -+-..++++.+ .+|.+. ++.++++ ++.+.+--+.++.++| T Consensus 208 ~~sF~~vl~LGGgp~~~Tlev~IYq~~~~~~D~~~--Aa~La~i~l~i~~~l~~l~~~~~~~ 267 (536) T PRK09433 208 FTSFATVLTLGGGPKATTIELAIYQALSFDFDLAR--AALLALLQLVLCLLLVLLSQRLSKA 267 (536) T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99888999955886403689999999986479999--9999999999999999999998224 No 57 >PRK10417 nikC nickel transporter permease NikC; Provisional Probab=99.70 E-value=5e-15 Score=108.94 Aligned_cols=189 Identities=22% Similarity=0.181 Sum_probs=144.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 999999999999978876667764210121-1232023503454420120210110000002101788999999887899 Q gi|254780341|r 92 ETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTS 170 (281) Q Consensus 92 ~~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi 170 (281) -+-.|+...+.++.++..+|+.+|+..+.+ ++.++.++.+.|.+.++|++...+.+...+|.|....++++.+...+.. T Consensus 65 G~r~sl~i~l~~~~~~~~iG~~lG~~ag~~gg~~d~~~~~~~d~~~~iP~lll~i~l~~~~g~~~~~~il~l~l~~w~~~ 144 (272) T PRK10417 65 GTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWY 144 (272) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999997187612477777889862862877888886448972589999999889999 Q ss_pred HHHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHH Q ss_conf 99958874129-989999999607882010122368862679999999999999999999999705------88049999 Q gi|254780341|r 171 VRLTRLGIIST-PPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS------NGLGVPVL 243 (281) Q Consensus 171 ~~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~------~GLG~~i~ 243 (281) .|.+..-.+++ ++|++|+||++|+|++++++|..+|...|.++.-.-..+..+.....--+++|- ...|.++. T Consensus 145 ar~iR~~~l~~~~~~yV~AAr~~G~s~~~I~~rhilPni~~~i~v~~~~~~~~~Il~~a~LsFLGlG~~pp~~~WG~ml~ 224 (272) T PRK10417 145 ARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLLGAVIPSLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMIN 224 (272) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH T ss_conf 99999999999989999999983958778322017676378999999999999999999999904789999988999999 Q ss_pred HHHHHHC--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHCC Q ss_conf 9997407--898999999999999----999999998742105 Q gi|254780341|r 244 RALNTVD--IGRGFESGLCIVILA----IILDRLFSIPDPRDR 280 (281) Q Consensus 244 ~a~~~~~--~~~~~~~~l~Iv~la----i~lDri~~~~~~r~~ 280 (281) ++.+... ....+..+++++++. ++-|.+-++.+.|.| T Consensus 225 ~~~~~l~~~pw~~~~P~~~i~l~vl~~nllgd~Lrd~ldP~l~ 267 (272) T PRK10417 225 DARQFIWTQPLLMFWPGLALFISVMAFNLLGDALRDHLDPHLV 267 (272) T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9999999784999999999999999999999999996096645 No 58 >PRK10561 glycerol-3-phosphate transporter permease; Provisional Probab=99.69 E-value=9.1e-15 Score=107.40 Aligned_cols=196 Identities=16% Similarity=0.176 Sum_probs=130.0 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHH-------------- Q ss_conf 213484499999999999999788766677642101211232023503454420120210110000-------------- Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALV-------------- 149 (281) Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~-------------- 149 (281) ..+..+|+...+|+......+.++.++|++++.++.+..+.++..+.++-.-..+|+.+....-.. T Consensus 48 ~~d~~f~~~~~ntl~~~~~~~~~~~~l~l~lA~ll~~~~~~~~~~r~~~~lP~~i~~vv~~~~w~~l~~~~~G~~n~~l~ 127 (280) T PRK10561 48 FHDSYYLDSFWTTIKFSALVTVSGLLVSLFFAALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLA 127 (280) T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 87977999999999999999999999999999998610207899999999875531999999999996987108999998 Q ss_pred HCCCCH------HHHHHHH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 002101------7889999----998878999995887412998999999960788201012236886267999999999 Q gi|254780341|r 150 LFGLGM------VPGIVAT----IVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT 219 (281) Q Consensus 150 ~fG~g~------~~~i~a~----~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~ 219 (281) .+|... ..+...+ +....|........|++++|+|+.|||+..|||+||+++||.+|...|.+..-+-.+ T Consensus 128 ~~g~~~~~~~~~~~a~~~vi~~~vW~~~g~~~li~lagL~~Ip~~l~EAA~iDGA~~~q~f~~ItlPll~p~~~~~~i~~ 207 (280) T PRK10561 128 EFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFYAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVN 207 (280) T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEEEHHHHHHHHHHHHHHH T ss_conf 65777754467489999999999999989999999999857997799999976997752331230461059999999999 Q ss_pred HHHHH-HHH-HHHHHHCC-CC-----HHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999-999-99999705-88-----049999-999740789899999999999999999999874210 Q gi|254780341|r 220 IMLSL-SMV-VVTALVGS-NG-----LGVPVL-RALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD 279 (281) Q Consensus 220 ~~~~l-~~v-via~~ig~-~G-----LG~~i~-~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~ 279 (281) ...+. ... .+-.+-|+ +| +.++++ .+.++.|++.+-+..+...++.+++--+..+..||+ T Consensus 208 ~i~~~~~~f~~i~~~t~GGP~~~t~~l~~~iy~~~f~~~~~g~asA~svil~~i~~~~~~i~~r~~~rk 276 (280) T PRK10561 208 LVYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESK 276 (280) T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999656888643688885288999999999998759961999999999999999999999998321 No 59 >PRK10998 malG maltose transporter permease; Provisional Probab=99.62 E-value=1e-13 Score=100.99 Aligned_cols=182 Identities=18% Similarity=0.199 Sum_probs=131.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHC---C-------CCHHH Q ss_conf 44999999999999997887666776421012112-3202350345442012021011000000---2-------10178 Q gi|254780341|r 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLF---G-------LGMVP 157 (281) Q Consensus 89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~f---G-------~g~~~ 157 (281) ++.-..+|+..+..++.+++++|.+.|+..+|.+. .++.+.-.+-....+|+.+.++|....+ | .+... T Consensus 81 ~~~~~~NSl~va~~~~v~~l~~~~~aaYalar~~f~g~~~l~~~~l~~~~iP~~~~~ip~~~~~~~lgl~~~~~~l~t~~ 160 (296) T PRK10998 81 VLLWLWNSVKIAGITAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTHG 160 (296) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH T ss_conf 89999999999999999999999999998731215558999999999999889999999999999960202201332249 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC Q ss_conf 8999999887899999588741299899999996078820101223688626799999999999999999999997-058 Q gi|254780341|r 158 GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV-GSN 236 (281) Q Consensus 158 ~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i-g~~ 236 (281) +++...+...|..+......++++|+|+.|||+..|||+||+++||.+|.+.|.+.+..=.+.+.+|.....+.++ +.. T Consensus 161 ~ii~~~~~~~~~~i~ll~~ff~~iP~el~EAA~iDGas~~~~f~~IilPl~~P~i~t~~i~~fi~~WNef~~~ll~l~~~ 240 (296) T PRK10998 161 GVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDV 240 (296) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999999999999862979899999985997777978767862599999999999999999999999990895 Q ss_pred -----CHHHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHH Q ss_conf -----804999999974078989999999----9999999999 Q gi|254780341|r 237 -----GLGVPVLRALNTVDIGRGFESGLC----IVILAIILDR 270 (281) Q Consensus 237 -----GLG~~i~~a~~~~~~~~~~~~~l~----Iv~lai~lDr 270 (281) .+|-.-..+.+..|++...++.+. ++++.+.+.| T Consensus 241 ~~~tl~v~l~~~~~~~~~~~g~~~A~~~i~~lP~lI~f~~~qr 283 (296) T PRK10998 241 NSYTLAVGMQQYLNPQNYLWGDFAAAAVLSALPITLVFLLAQR 283 (296) T ss_pred CCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 4300999999986623564999999999999999999999999 No 60 >TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysT, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysW (IPR011866 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=99.62 E-value=3.7e-16 Score=115.78 Aligned_cols=179 Identities=22% Similarity=0.319 Sum_probs=132.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHC-------------C----CCHH Q ss_conf 99999999997887666776421012112-3202350345442012021011000000-------------2----1017 Q gi|254780341|r 95 ETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLF-------------G----LGMV 156 (281) Q Consensus 95 ~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~f-------------G----~g~~ 156 (281) .|+...+.|..+=.++|+.++..+-|++- .+|+++-.+|+--+.|.=|.-+-+..++ | +++. T Consensus 54 ~sf~~Al~Aa~~N~vFG~l~AWVLVRY~FPGKri~DAlVDLPFALPTAVAGIaL~TlY~~NGWiG~~l~~lGIKvAfTpl 133 (265) T TIGR02139 54 LSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYAPNGWIGSFLEPLGIKVAFTPL 133 (265) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECC T ss_conf 99999999999999999999889861247505777666233542034799999999962889401258554987887201 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---- Q ss_conf 8899999988789999958874129989999999607882010122368862679999999999999999999999---- Q gi|254780341|r 157 PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTAL---- 232 (281) Q Consensus 157 ~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~---- 232 (281) ..++|.+..++|.++|.+.==+++.|+|+.|||.++||||||++|||.+|.-.|.+++|.- ++++- -++|+ T Consensus 134 Gi~~Al~FvsLPFVVRTVQPVL~e~~~E~EEAA~~LGAS~w~tF~~vilP~L~PALLTG~A----LaFAR-a~GEYGSVi 208 (265) T TIGR02139 134 GIVVALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWKVILPALLPALLTGFA----LAFAR-AVGEYGSVI 208 (265) T ss_pred CEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCHHEEEEEECCCCCCHHHHHHH----HHHHH-HHHHHHCEE T ss_conf 0143423325882573114300058864899976516882000222331444006999789----98875-432333000 Q ss_pred -HCCC------CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH---HHHHHHHHHH Q ss_conf -7058------80499999997407898999999999999999---9999987421 Q gi|254780341|r 233 -VGSN------GLGVPVLRALNTVDIGRGFESGLCIVILAIIL---DRLFSIPDPR 278 (281) Q Consensus 233 -ig~~------GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~l---Dri~~~~~~r 278 (281) |.+| =.=-+|..-++++|+..+-+-+.++.+++.++ =-+.|+..+| T Consensus 209 FIAGN~P~~tEI~PLLI~~kLEqYDY~gATaIA~vmL~~SF~~Ll~IN~lQ~~~~r 264 (265) T TIGR02139 209 FIAGNLPMKTEIAPLLIFIKLEQYDYAGATAIAVVMLLISFVLLLFINLLQWRALR 264 (265) T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 22268880678899999777544123789999999999999999999999997506 No 61 >PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional Probab=99.59 E-value=1.4e-13 Score=100.15 Aligned_cols=175 Identities=14% Similarity=0.200 Sum_probs=126.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHH---CCCCH-HHHHHH Q ss_conf 484499999999999999788766677642101211-2320235034544201202101100000---02101-788999 Q gi|254780341|r 87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVL---FGLGM-VPGIVA 161 (281) Q Consensus 87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~---fG~g~-~~~i~a 161 (281) .++|....+|+..+..++.++++++.+.|+..+|.+ +.++.+...+-..+.+|..+.++|.... +|.-+ ..+++. T Consensus 71 ~~f~~~~~NSliva~~~~~~~~~~~~~aaYalsr~~f~~~~~~~~~~l~~~~iP~~~~~iP~~~~~~~lgl~~t~~glil 150 (281) T PRK10973 71 APFGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTL 150 (281) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 15999999999999999999999999999999984054199999999999998999999999999999397110899999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC--- Q ss_conf 99988789999958874129989999999607882010122368862679999999999999999999999705-88--- Q gi|254780341|r 162 TIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS-NG--- 237 (281) Q Consensus 162 ~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~-~G--- 237 (281) ...+.|.-+.....-++++|+|+.|||+..|||+||+++||.+|.+.|.+.+-.=.+...+|..-..+-.+-+ +. T Consensus 151 -~~~~~~~~i~l~~~f~~~IP~el~EAA~iDGas~~~~f~~IilPl~kP~i~tv~i~~fi~~WNef~~p~~~~~~~~~~t 229 (281) T PRK10973 151 -PLMASATATFLFRQFFMTLPDELVEAARIDGAGPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLITTDASLGT 229 (281) T ss_pred -HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH T ss_conf -9999999999999999768888999999819867778154100265999999999999999997987788627853011 Q ss_pred ----HHHHHHHHHHHHCHHHHHHHHHHHH Q ss_conf ----0499999997407898999999999 Q gi|254780341|r 238 ----LGVPVLRALNTVDIGRGFESGLCIV 262 (281) Q Consensus 238 ----LG~~i~~a~~~~~~~~~~~~~l~Iv 262 (281) +-.....+....|++..+++.+... T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~A~~vl~~ 258 (281) T PRK10973 230 AVAGIKGMIATGEGTTEWNQVMAAMLLTL 258 (281) T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 99999999854677635999999999999 No 62 >COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism] Probab=99.58 E-value=3.9e-13 Score=97.58 Aligned_cols=184 Identities=24% Similarity=0.307 Sum_probs=132.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHC---CCCH--HHHHHH Q ss_conf 844999999999999997887666776421012112-3202350345442012021011000000---2101--788999 Q gi|254780341|r 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLF---GLGM--VPGIVA 161 (281) Q Consensus 88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~f---G~g~--~~~i~a 161 (281) ++|....+|+-.+..++.+++++|.+.|+..+|.+. .++.+.-++-....+|..+.++|....+ |.-+ .+-++. T Consensus 70 ~~~~~~~NS~iva~~~t~l~~~~~~laaYalar~~f~g~~~l~~~~l~~~m~P~~v~~iPl~~~~~~lgl~nt~~glil~ 149 (281) T COG0395 70 GFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQVLLIPLYLLMRKLGLLNTYWGLILP 149 (281) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 89999998999999999999999999899999853360999999999999856999999899999982661047999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC--- Q ss_conf 999887899999588741299899999996078820101223688626799999999999999999999997-0588--- Q gi|254780341|r 162 TIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV-GSNG--- 237 (281) Q Consensus 162 ~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i-g~~G--- 237 (281) ......|..+....+-.+++|+|+.||||..|||+||.++||.+|.+.|.+.+-.=.+.+.+|..-..+-.+ +.+. T Consensus 150 ~~~~~~pf~ifl~~~ff~~iP~eLeEAA~iDGas~~~if~kI~lPl~~P~iaa~aI~~fi~~WN~fl~pli~~~~~~~~t 229 (281) T COG0395 150 YLAFGLPFAIFLLRQFFRTIPKELEEAARIDGASEFQIFFKIVLPLAKPGLAAVAIFTFIGAWNEFLWPLILLSSPNLLT 229 (281) T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99998889999999999869899999999828965789999998703789999999999999999999999918876421 Q ss_pred --HHHHHHHH-HHHHCHHHHHHHHHHH----HHHHHHHHHH Q ss_conf --04999999-9740789899999999----9999999999 Q gi|254780341|r 238 --LGVPVLRA-LNTVDIGRGFESGLCI----VILAIILDRL 271 (281) Q Consensus 238 --LG~~i~~a-~~~~~~~~~~~~~l~I----v~lai~lDri 271 (281) +|-....+ ....|.+..+++.+.. +++-+.+.|- T Consensus 230 l~v~l~~~~~~~~~~~w~~~~A~~vi~~lP~li~f~~~Qr~ 270 (281) T COG0395 230 LPVGLNSFGGSEGGTDWGLIMAAAVLAILPVLIVFLFFQRY 270 (281) T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999996343356668999999999999999999999999 No 63 >COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism] Probab=99.55 E-value=1.7e-12 Score=93.64 Aligned_cols=195 Identities=24% Similarity=0.341 Sum_probs=129.7 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCCHHHH--------------HHH Q ss_conf 213484499999999999999788766677642101211232023503454420120210110--------------000 Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIP--------------ALV 149 (281) Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v~l~p--------------~i~ 149 (281) ..+..+|+...+|+..+..++.+..++|..++....+..+.++..+-..-.-..+|+.+.... ... T Consensus 61 ~~d~~f~~al~nT~~~~~~~v~~~~~lgl~lAlll~~~~~g~~~~r~~~~lP~~~~~vv~~~iw~~l~~~~~G~~n~~l~ 140 (295) T COG1175 61 FSDPTFWNALKNTLVFTVISVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWAISSVVAGLIWKWLFNPSFGLLNSLLL 140 (295) T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 73847999999999999999999999999999998470447999999999998999999999999998876358999999 Q ss_pred HCCCCH--------HHH----HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 002101--------788----99999988789999958874129989999999607882010122368862679999999 Q gi|254780341|r 150 LFGLGM--------VPG----IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLT 217 (281) Q Consensus 150 ~fG~g~--------~~~----i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~ 217 (281) .+|+.. ..+ +++.+.-..|........|++++|+|+.|||+..|+|+||+++||.+|.-.|.++.-+- T Consensus 141 ~~gl~~~~~wl~~~~~A~~~iii~~vW~~~~f~mli~lAgLq~Ip~~lyEAA~iDGA~~~q~f~~ItlP~l~p~i~~~~i 220 (295) T COG1175 141 LLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPKELYEAARIDGASPWQRFRKITLPLLRPVIFFVLI 220 (295) T ss_pred HHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 80575556341390699999999999999849999999999569999999995899964365454104410279999999 Q ss_pred HHHHHHHHHHHHHH-HHC-CCC-----HHHHHHH-HHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHH Q ss_conf 99999999999999-970-588-----0499999-9974078989999999999999----999999987421 Q gi|254780341|r 218 QTIMLSLSMVVVTA-LVG-SNG-----LGVPVLR-ALNTVDIGRGFESGLCIVILAI----ILDRLFSIPDPR 278 (281) Q Consensus 218 ~~~~~~l~~vvia~-~ig-~~G-----LG~~i~~-a~~~~~~~~~~~~~l~Iv~lai----~lDri~~~~~~r 278 (281) .....++..--+.- +-| ++| +.+++++ +.++.|.+.+-+..+.+.++.+ ..-|..+..++| T Consensus 221 ~~~i~~~~~Fd~i~~lT~GGP~~~T~~l~~~~y~~af~~~~~G~asA~avil~~i~~~~~~~~~~~~~~~~~~ 293 (295) T COG1175 221 LRTIFAFQVFDLIYLLTGGGPGNATTTLAYYIYRTAFGGLDFGYAAAIAVILFLIVLILTVVQLRLLRRKERR 293 (295) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999973699998079996225599999999987006664899999999999999999999998743531 No 64 >TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC; InterPro: IPR014157 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.. Probab=99.50 E-value=2e-12 Score=93.34 Aligned_cols=173 Identities=23% Similarity=0.352 Sum_probs=140.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999999978876667764210121-12320235034544201202101100000021017889999998878999 Q gi|254780341|r 93 TTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSV 171 (281) Q Consensus 93 ~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi~ 171 (281) +=.||..++.-+.....+|+++|..+|.. .+++++++.++|.+-+.|+++...-++-++|.|-...++|.+..--++.+ T Consensus 61 ~R~SLg~al~~l~~~~~iG~~iG~~aGy~GG~vD~~~MR~~D~~lsfPt~~L~L~ivG~lG~Gl~nviiA~vl~~Wa~YA 140 (258) T TIGR02790 61 ARVSLGLALLVLGLVLVIGVLIGLIAGYIGGRVDEVIMRVCDVFLSFPTIVLALAIVGLLGPGLENVIIALVLVQWAWYA 140 (258) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999985301540200025547588755789999999857434799999999997547899 Q ss_pred HHHH---HHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHC------CCCHHH Q ss_conf 9958---87412998999999960788201012236886267999999999999999999999--970------588049 Q gi|254780341|r 172 RLTR---LGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTA--LVG------SNGLGV 240 (281) Q Consensus 172 ~~t~---~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~--~ig------~~GLG~ 240 (281) |..+ -.+|+ ||++++||+.|+|+||+++|..+|+.+|.+.. ==++-+.+.+.-|++ ++| ++.-|. T Consensus 141 R~vRg~v~Slk~--~~fvlaar~~g~s~~~ii~rHi~~~i~~~iiV--LaTLeiG~~il~ia~LSFLGLGiQPPtPEWG~ 216 (258) T TIGR02790 141 RMVRGMVVSLKQ--KEFVLAARASGASHWQIIRRHILPNILSPIIV--LATLEIGHVILHIAALSFLGLGIQPPTPEWGI 216 (258) T ss_pred HHHHHHHHHHHH--HHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 999999999986--88999999975898445042113210147999--99689999999998766742378987834564 Q ss_pred HHHHHHHHHC--HHHHHHHHHHHHHHHHHHH Q ss_conf 9999997407--8989999999999999999 Q gi|254780341|r 241 PVLRALNTVD--IGRGFESGLCIVILAIILD 269 (281) Q Consensus 241 ~i~~a~~~~~--~~~~~~~~l~Iv~lai~lD 269 (281) ++.+|.++.. ..++++-|++|.+.-..+- T Consensus 217 Ml~eak~y~~t~P~lmiyPG~ail~~V~~FN 247 (258) T TIGR02790 217 MLSEAKEYLRTQPELMIYPGLAILITVMAFN 247 (258) T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH T ss_conf 6887689886271788886599999999997 No 65 >TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologues.. Probab=99.43 E-value=1.1e-11 Score=88.85 Aligned_cols=192 Identities=19% Similarity=0.277 Sum_probs=152.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCC---HHHHHHHH--CCCCHHH---HH Q ss_conf 44999999999999997887666776421-0121123202350345442012021---01100000--0210178---89 Q gi|254780341|r 89 YWQETTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFV---YLIPALVL--FGLGMVP---GI 159 (281) Q Consensus 89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v---~l~p~i~~--fG~g~~~---~i 159 (281) +|+-++.|+.+++.|..++++.+...|+. +.+.+.++..-.-+++++|..--+| |+-.++.+ +|+.-.| ++ T Consensus 7 ~lQGAwVT~~iTl~gs~la~V~Af~aglgr~s~~~~lr~~a~~YiE~FRGTSllVQLFW~yfvLPlPP~gl~l~P~t~gv 86 (216) T TIGR03004 7 LLQGAWVTLQITLAGSVLAVVVAFLAGLGRLSRFRILRALAVVYIEVFRGTSLLVQLFWLYFVLPLPPIGLELDPLTVGV 86 (216) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH T ss_conf 99889999999999999999999999887523535887777787544203789999999999725799984025189999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 99999887899999588741299899999996078820101223688626799999999999999999999997058804 Q gi|254780341|r 160 VATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG 239 (281) Q Consensus 160 ~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG 239 (281) .+.....--.=.-.+.-++++|.++..||++++..+|.|.++|+.||+|++..+...-....-.++...+-++|.-.+|- T Consensus 87 ~~Lglh~GaYGAEivRGA~~sv~~~Q~EAc~ALNftrfq~~rrI~LPQAl~~mmp~fgNlaIElLK~tslVSLIslaDlt 166 (216) T TIGR03004 87 LALGLHVGAYGAEIVRGAVKSVSKEQLEACIALNFTRFQALRRIVLPQALVEMMPAFGNLAIELLKLTSLVSLISLADLT 166 (216) T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99997326501688888899743658999998415367799876326799974386615899999878999999998676 Q ss_pred HHHHHH-HHHHCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC Q ss_conf 999999-9740789899999999-9999999999998742105 Q gi|254780341|r 240 VPVLRA-LNTVDIGRGFESGLCI-VILAIILDRLFSIPDPRDR 280 (281) Q Consensus 240 ~~i~~a-~~~~~~~~~~~~~l~I-v~lai~lDri~~~~~~r~~ 280 (281) +.-..- .++.|+-..|+-.+.. -.++.++.-..+++|||-+ T Consensus 167 F~Aq~~r~~T~~tl~~fa~~LL~YFvMa~~i~l~~R~lEr~v~ 209 (216) T TIGR03004 167 FRAQSVRALTLDTLKVFALILLLYFVMALIISLAMRVLERRVA 209 (216) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999841002799999999999999999999998866640 No 66 >COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism] Probab=99.42 E-value=8.8e-12 Score=89.43 Aligned_cols=189 Identities=19% Similarity=0.231 Sum_probs=126.7 Q ss_pred CCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCC------- Q ss_conf 484499----9999999999997887666776421-0121123202350345442012021011000000210------- Q gi|254780341|r 87 QGYWQE----TTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG------- 154 (281) Q Consensus 87 ~g~W~~----~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g------- 154 (281) .|++++ ++.|+...+.+..+++++|..-+.. ++++|..+....-+..+++.+|.++.. +.+.||-. T Consensus 4 ~G~~~~l~~ga~~Tl~lAv~sl~lgl~lGl~~A~~kls~~r~lr~~~~~YtTv~RGvPELl~i--lliyfG~~~lL~~~~ 81 (230) T COG4215 4 AGWGDELLQGALVTLELAVCSLILGLLLGLLGALGKLSKNRLLRLLGNVYTTVIRGVPELLLI--LLIYFGGQILLNTLA 81 (230) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHHH T ss_conf 760799999999999999999999999999999998666606789754353554267199999--999983099999999 Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---------------17889999998878999995887412998999999960788201012236886267999999999 Q gi|254780341|r 155 ---------------MVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT 219 (281) Q Consensus 155 ---------------~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~ 219 (281) ..++++++.+..-....-.-..+++.||+..+|+++++|.|++|+++++.+|+..+.=+-|+-.. T Consensus 82 ~~~~~~g~~~idi~~FvaGviaL~~i~gAYatEt~RGA~~AVp~GQ~EAa~AlGms~~~~frrI~lPqm~R~ALPGlgN~ 161 (230) T COG4215 82 DVTGALGVGFIDISPFVAGVIALGLIFGAYATETLRGAFKAVPKGQIEAARALGLSRSQTFRRIVLPQMWRHALPGLGNL 161 (230) T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 87301477745567499999999999999989999999972896518899980998768899999888999827885302 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC Q ss_conf 9999999999999705880499999997407---8989999999999--99999999998742105 Q gi|254780341|r 220 IMLSLSMVVVTALVGSNGLGVPVLRALNTVD---IGRGFESGLCIVI--LAIILDRLFSIPDPRDR 280 (281) Q Consensus 220 ~~~~l~~vvia~~ig~~GLG~~i~~a~~~~~---~~~~~~~~l~Iv~--lai~lDri~~~~~~r~~ 280 (281) -...+... +++.-=|+...+..+.+-.+ -+-.|....+... ++.+-....++.|||.+ T Consensus 162 WlvllKDT---ALVSvIGl~dl~~~a~~aa~~Tk~pFtfy~~aa~iYL~~t~vS~~~l~~lErr~~ 224 (230) T COG4215 162 WLVLLKDT---ALVSLIGLNDLMRQTQLAAGSTKEPFTFYIVAALIYLVITLVSNVVLLFLERRAS 224 (230) T ss_pred HHHHHHCC---HHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 67776300---3542115999999999873455554399999999999999999999999999854 No 67 >PRK10999 malF maltose transporter membrane protein; Provisional Probab=99.38 E-value=9.2e-11 Score=83.27 Aligned_cols=149 Identities=21% Similarity=0.313 Sum_probs=104.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHCCCHHHHHHHHCCCCCHHHHHH---------------HHCC Q ss_conf 4499999999999999788766677642101-21123202350345442012021011000---------------0002 Q gi|254780341|r 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAA-WYPRFYSIIRLFLDSMQTIPTFVYLIPAL---------------VLFG 152 (281) Q Consensus 89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~-~~~~~~~~~~p~l~~~~~iP~~v~l~p~i---------------~~fG 152 (281) +|+-..-|+.-+..++.+...+|+.+++.+- ++=|.+++.+-++-+-.++|+++-...-- .++| T Consensus 283 f~~v~~WT~~fa~~sv~~~~~lGl~lAllln~~~~rgr~~~R~l~ilP~avP~~is~lvw~~mfn~~~G~iN~~L~~l~g 362 (520) T PRK10999 283 FIAIFVWTVVFSLLTVVFTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFG 362 (520) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC T ss_conf 56667667899999999999999999998287566607689999999989999999999998428886579999998059 Q ss_pred CC------HHHH----HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10------1788----9999998878999995887412998999999960788201012236886267999999999999 Q gi|254780341|r 153 LG------MVPG----IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIML 222 (281) Q Consensus 153 ~g------~~~~----i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~ 222 (281) +. +..+ +++-....+|.+......|++++|+|+.|||+.-||++||+++|+.+|.-+|.+..-+-.+... T Consensus 363 ~~~~Wl~dp~~A~~~viiv~~W~g~p~~~i~~la~Lq~IP~~lyEAA~iDGA~~~~~f~~ITlPll~~~~~~lli~~~i~ 442 (520) T PRK10999 363 IKPAWFSDPTTARTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAF 442 (520) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHHHHHHHHH T ss_conf 99863479699999999999995172999999998715998999999852965650451467202358899999999999 Q ss_pred HHHHHHHHHHHCCCC Q ss_conf 999999999970588 Q gi|254780341|r 223 SLSMVVVTALVGSNG 237 (281) Q Consensus 223 ~l~~vvia~~ig~~G 237 (281) ++.....--+...|| T Consensus 443 ~fn~F~~I~llT~GG 457 (520) T PRK10999 443 NFNNFVLIQLLTNGG 457 (520) T ss_pred HHHCHHHHHHHCCCC T ss_conf 962525776434899 No 68 >COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism] Probab=99.34 E-value=1.9e-10 Score=81.39 Aligned_cols=200 Identities=22% Similarity=0.344 Sum_probs=146.7 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHCCCHHHHHHHHCCCCCHHHHHHHH------ Q ss_conf 877542213484499999999999999788766677642101-2112320235034544201202101100000------ Q gi|254780341|r 78 AMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAA-WYPRFYSIIRLFLDSMQTIPTFVYLIPALVL------ 150 (281) Q Consensus 78 ~~~~~~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~-~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~------ 150 (281) ...+....+..+|+-..+|++....+..++.+.|+|++...+ +.-|.++.+.-+.|..+++|....-..+.++ T Consensus 10 Al~Ll~~ld~~l~~iv~~tl~vSl~~i~laalv~~pLa~vl~~~~frgkr~i~~i~~tl~s~PTVlvGLlLylLlSr~GP 89 (227) T COG4662 10 ALFLLFSLDPELIGIVATTLYVSLISIFLAALVGVPLAFVLALREFRGKRFIKMIINTLLSMPTVLVGLLLYLLLSRSGP 89 (227) T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC T ss_conf 99999818999999999999999999999997532899999983475479999999886316399999999999964699 Q ss_pred ---CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---02--1017889999998878999995887412998999999960788201012236886267999999999999999 Q gi|254780341|r 151 ---FG--LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS 225 (281) Q Consensus 151 ---fG--~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~ 225 (281) |+ +...+-+.-..+.++|.++-.....++++||+..|.++++|+|+.|...++.--+..+ +++.+--+.+-+.+ T Consensus 90 lG~f~LLfT~~amILGq~iL~lPlvia~~l~ale~~dpr~~ela~~lgas~~kl~~t~~~Earf~-l~aav~agfgR~V~ 168 (227) T COG4662 90 LGWFNLLFTQDAMILGQAILILPLVIAFVLTALESVDPRLKELARSLGASPLKLASTVFREARFG-LMAAVAAGFGRAVA 168 (227) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH T ss_conf 86303676210699887999999999999999984597899999980995899999999999867-99999998617999 Q ss_pred HHHHHHHHCCC--CHHHHHHHH----HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999997058--804999999----974078989999999999999999999987421 Q gi|254780341|r 226 MVVVTALVGSN--GLGVPVLRA----LNTVDIGRGFESGLCIVILAIILDRLFSIPDPR 278 (281) Q Consensus 226 ~vvia~~ig~~--GLG~~i~~a----~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r 278 (281) -+-++-|+|++ |.-.-+..+ .+..|.+++.+-+++...+++.+.-+..+.++| T Consensus 169 EvG~AmmvGGnI~g~TR~itTAIslET~kG~fa~gIaLgiVLlaial~ln~vl~~l~~~ 227 (227) T COG4662 169 EVGVAMMVGGNIRGRTRVITTAISLETNKGNFAQGIALGIVLLAIALALNFVLTALQGK 227 (227) T ss_pred HHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 86277603575111223300244356034529885899999999999999999984469 No 69 >COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] Probab=99.25 E-value=1.4e-11 Score=88.28 Aligned_cols=178 Identities=26% Similarity=0.382 Sum_probs=126.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCHHHHHH-HHCCC--------CH-------- Q ss_conf 99999999997887666776421012--1123202350345442012021011000-00021--------01-------- Q gi|254780341|r 95 ETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVYLIPAL-VLFGL--------GM-------- 155 (281) Q Consensus 95 ~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~l~p~i-~~fG~--------g~-------- 155 (281) .|+.+...++.+++++|+|+|+..|. .++.++.++.+--.-.++|.|- +.|.. .+|.. |. T Consensus 76 aT~ELC~~af~lal~~GiPlG~iagv~~~kw~d~~i~~is~~G~SiPvFW-lAl~ll~f~slh~~~~pv~GrydLLY~ik 154 (321) T COG4168 76 ATMELCFLAFGLALIVGIPLGMIAGVTRHKWLDKLISAISLLGFSIPVFW-LALLLLLFFSLHLGWLPVSGRYDLLYEIK 154 (321) T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHCCCEECCCCEEEEEEEC T ss_conf 18999999999999984647988775423078899999998546745999-99999999997514110343101456504 Q ss_pred ----H-------------HH---------HHHHHHHHHHH---HHHHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf ----7-------------88---------99999988789---999958874129-989999999607882010122368 Q gi|254780341|r 156 ----V-------------PG---------IVATIVFSIPT---SVRLTRLGIIST-PPILKEAACAFGATPFQVFRKVEL 205 (281) Q Consensus 156 ----~-------------~~---------i~a~~i~~~~p---i~~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~l 205 (281) . ++ +..+.+.++.| ++|.......+| +++++++|..-|.|+|++++|..+ T Consensus 155 piTGfalIDawls~spyRt~~iqs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qNyikaA~trGlS~~~Ilr~hVl 234 (321) T COG4168 155 PITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQNYIKAAATRGLSRFTILRRHVL 234 (321) T ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 54662778898637705789999999998888999997347999999999899997424899999656035589999998 Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 86267999--9999999999999999999-7058804999999974078989999999999999999999987 Q gi|254780341|r 206 PFAIPQIV--ASLTQTIMLSLSMVVVTAL-VGSNGLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIP 275 (281) Q Consensus 206 P~a~P~i~--~Gi~~~~~~~l~~vvia~~-ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~ 275 (281) ..++|.+. .|.-.+.|+.+ ..+.|. .|=+|+|....+|.++.|+...-++.++|..+-++.|.+++.. T Consensus 235 rNalPplIPq~g~qfs~mLTl--amitEs~f~WPGiGRWLinAi~qqDy~sIsaGViViG~lviivnvlsdi~ 305 (321) T COG4168 235 RNALPPLIPQLGLQFSTMLTL--AMITESVFGWPGIGRWLINAIRQQDYASISAGVIVIGSLVIIVNVLSDIL 305 (321) T ss_pred HHCCCCCCCCHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHHHHCCHHHHHCCEEEEEEEEEEHHHHHHHH T ss_conf 504785444136799999999--99999982897525999999876006766356279866544188889999 No 70 >COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism] Probab=99.23 E-value=3.9e-09 Score=73.52 Aligned_cols=182 Identities=24% Similarity=0.299 Sum_probs=124.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHC---C-CCHHHHHHH Q ss_conf 4844999999999999997887666776421012112-3202350345442012021011000000---2-101788999 Q gi|254780341|r 87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLF---G-LGMVPGIVA 161 (281) Q Consensus 87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~f---G-~g~~~~i~a 161 (281) ..+|.-..+|+........+.+.+..+.|+..+|.|. .|+...-..-++|.+|.++.++++..++ | +....+++. T Consensus 69 ~~y~~W~~Nsliva~~t~~i~v~~~~~~aYafSR~rF~GRk~~L~~~Li~qMfP~~~aliAlY~l~~~lgllnt~~gLil 148 (282) T COG3833 69 FPYLLWLWNSLIVALITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLILQMFPGVAALIALYVLLKLLGLLNTLWGLIL 148 (282) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 17899999999999999999999999989889986265589999999999998999999999999999657116789999 Q ss_pred HHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC---- Q ss_conf 99988-789999958874129989999999607882010122368862679999999999999999999999-705---- Q gi|254780341|r 162 TIVFS-IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTAL-VGS---- 235 (281) Q Consensus 162 ~~i~~-~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~-ig~---- 235 (281) +-+.. .|.-.-..-.-++++|+|+.|+|+.-|||+||+++||.+|.+.|.+..-.-.+.+-.+...+.+.. ... T Consensus 149 ~Y~gG~ip~n~~l~Kgy~DTIP~sldEaA~iDGAt~~q~F~~IvLPLs~P~lavvaL~~FiGp~~dfiLa~~lL~~~~~~ 228 (282) T COG3833 149 AYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGDFILASLLLRDPENY 228 (282) T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH T ss_conf 99647326889999844503895679998654850689999999860005999999999875779999999997481554 Q ss_pred ---CCHHHHHHHHHHHHCHHHHHHHHHH-----HHHHHHHHHH Q ss_conf ---8804999999974078989999999-----9999999999 Q gi|254780341|r 236 ---NGLGVPVLRALNTVDIGRGFESGLC-----IVILAIILDR 270 (281) Q Consensus 236 ---~GLG~~i~~a~~~~~~~~~~~~~l~-----Iv~lai~lDr 270 (281) -||=+.+.. .+..+.+ .|+|+-. ++++=+.++| T Consensus 229 TlavGL~~~~~~-~~~~~~~-~FAAgAvL~alPi~iLF~~lQk 269 (282) T COG3833 229 TLAVGLQSFLNG-PQNTNWG-LFAAGAVLIALPITILFLVLQK 269 (282) T ss_pred HHHHHHHHHHCC-CCHHHHH-HHHHHHHHHHCCHHHHHHHHHH T ss_conf 259999999367-2102699-9999999986419999999999 No 71 >TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.. Probab=99.23 E-value=5e-11 Score=84.90 Aligned_cols=209 Identities=24% Similarity=0.226 Sum_probs=154.8 Q ss_pred CHHHHHHHHHHHHC-CCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCCHH Q ss_conf 30288887754221-348449999----99999999997887666776421012--112320235034544201202101 Q gi|254780341|r 72 TIAVGTAMGLLLII-KQGYWQETT----ETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFVYL 144 (281) Q Consensus 72 ~~~~~~~~~~~~i~-~~g~W~~~~----~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v~l 144 (281) .-+.--.+|.+++. ..--||+.. .|+.+...|.++.+++.+|+|+++++ .+..++..+-+.=+.-++|.|-.. T Consensus 73 ~~~~hLDFGiSYi~i~rpV~De~~~~LPaTl~LA~~aL~i~vlvSvPLG~LAA~~r~~~~D~~~R~~~FlG~siPnFWLA 152 (315) T TIGR02789 73 WKALHLDFGISYISIDRPVLDEVARSLPATLELAGLALVIVVLVSVPLGILAARYRDRLPDHAVRFISFLGVSIPNFWLA 152 (315) T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99987314640566689508889743538899999999999999840889998873686407899999996430568999 Q ss_pred HHHHHHC----------CCCHHH-HHH---HHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 1000000----------210178-899---9999887899999588-741299899999996078820101223688626 Q gi|254780341|r 145 IPALVLF----------GLGMVP-GIV---ATIVFSIPTSVRLTRL-GIISTPPILKEAACAFGATPFQVFRKVELPFAI 209 (281) Q Consensus 145 ~p~i~~f----------G~g~~~-~i~---a~~i~~~~pi~~~t~~-gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~ 209 (281) -.++..| |.|... -+. +++...+-.-+|.-.+ =+++..+.++.-||.=|.++.|+.+|..||.|. T Consensus 153 ~LLv~~fsvyL~lLP~~G~gtW~HlvLP~~tlal~~~a~y~RLLRaS~Ld~~qe~yv~yAR~RGi~~~~v~~~H~Lrna~ 232 (315) T TIGR02789 153 FLLVFLFSVYLDLLPVEGAGTWQHLVLPAVTLALMSVAIYARLLRASMLDNLQERYVTYARVRGIKERNVIRRHILRNAI 232 (315) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHECCCCHHHHHHHHHHCCCCH T ss_conf 99999999986133767787331133888999999999999999999998628870730110264657768863241110 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC Q ss_conf 799999999999999999999997-058804999999974078989999999999----99999999998742105 Q gi|254780341|r 210 PQIVASLTQTIMLSLSMVVVTALV-GSNGLGVPVLRALNTVDIGRGFESGLCIVI----LAIILDRLFSIPDPRDR 280 (281) Q Consensus 210 P~i~~Gi~~~~~~~l~~vvia~~i-g~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~----lai~lDri~~~~~~r~~ 280 (281) -...||+=-.++.-+.+..|-|-| +=+|.|.+-..|.=+.|++.+-..++..+. .=.+.|-+-.+.+.|+| T Consensus 233 ~p~iTA~GM~~g~Ll~GT~viE~iFswPG~GRy~i~AifNRDyPviQcy~Ll~~~lfv~cNLivD~~~a~lDPR~r 308 (315) T TIGR02789 233 LPMITALGMHIGELLGGTLVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMALLFVLCNLIVDLLQALLDPRIR 308 (315) T ss_pred HHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 2567760013887840711454101266610457433562376389999999999999999999999985187611 No 72 >COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] Probab=99.21 E-value=8.7e-11 Score=83.42 Aligned_cols=183 Identities=22% Similarity=0.296 Sum_probs=118.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHH--------------- Q ss_conf 9999999999997887666776421-012112320235034544201202101100000021017--------------- Q gi|254780341|r 93 TTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMV--------------- 156 (281) Q Consensus 93 ~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~--------------- 156 (281) ...|+.+...+..++.++++|+++. .++++.++....-++-+++..|-.+= ..+.-.|.|.. T Consensus 17 l~~TL~Ll~~S~~iG~~LAvpla~~r~s~~~~v~~~a~~y~~~fRGTPLLvQ--lfLiYyGlgqf~~ir~s~~lW~~lr~ 94 (228) T COG4160 17 LATTLWLLIISLVIGFVLALPLALARVSKNRWVSWPARAYTYVFRGTPLLVQ--LFLIYYGLGQFEWIRESIFLWPFLRE 94 (228) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHEEEEEECCCHHHHH--HHHHHHCCCCCHHHHHHHHHHHHHHC T ss_conf 9999999999999999999999999972885001112501456538749999--99999464314688840665899825 Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---88999999887899999588741299899999996078820101223688626799999999999999999999997 Q gi|254780341|r 157 ---PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV 233 (281) Q Consensus 157 ---~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i 233 (281) .++.+..+..-....-...-++++||+...|+++++|+||+|+++|+.+|.|+..=+.....-+.+-+...-+++-+ T Consensus 95 ~w~Ca~lAltLNtaAY~~Ei~rGAi~avP~Gq~Eaa~AlGmsr~~~~r~IiLP~Alr~ALp~YsNEvILmlK~Tala~ti 174 (228) T COG4160 95 AWFCAVLALTLNTAAYTTEIFRGAIRAVPRGQWEAARALGMSRFKTLRRIILPSALRRALPAYSNEVILMLKSTALASTI 174 (228) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHH T ss_conf 28899999999779999999988985289417899998196299999999977999984624588379998344154341 Q ss_pred C---CCCHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 0---588049999999740789899-999999999999999999874210 Q gi|254780341|r 234 G---SNGLGVPVLRALNTVDIGRGF-ESGLCIVILAIILDRLFSIPDPRD 279 (281) Q Consensus 234 g---~~GLG~~i~~a~~~~~~~~~~-~~~l~Iv~lai~lDri~~~~~~r~ 279 (281) . --|..+.+. .+.+|.=+.+ .+++.=..+..++-++.++.|+|- T Consensus 175 Tv~Dl~g~ar~i~--~~Ty~~~~~f~~ag~iYl~it~il~~~~r~~E~r~ 222 (228) T COG4160 175 TVMDLMGYARLIN--SRTYDPYEVFGIAGAIYLIITGILTLLFRLIERRW 222 (228) T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 3999999999999--97768999999999999999999999999999987 No 73 >COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism] Probab=99.13 E-value=3.6e-10 Score=79.73 Aligned_cols=197 Identities=22% Similarity=0.245 Sum_probs=134.6 Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHCCC----CH- Q ss_conf 422134844999999999999997887666776421012112-320235034544201202101100000021----01- Q gi|254780341|r 82 LLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLFGL----GM- 155 (281) Q Consensus 82 ~~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~----g~- 155 (281) ..+...+.+....-|+-.+.+++.+-.++|+..+...+|++. -++.+..++|+-.++.+.+.-...+.+||- |. T Consensus 56 ~~~~~PdalsAi~LTllva~I~VPlN~vFGv~aAW~iakf~F~Gk~lL~tlIDlPFsVSPVvaGl~~vLl~g~~g~lG~w 135 (287) T COG4208 56 AALSDPDALSAIKLTLLVALIAVPLNVVFGVAAAWAIARFEFPGKALLLTLIDLPFSVSPVVAGLVYVLLFGSNGWLGGW 135 (287) T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHH T ss_conf 98469668999999999998630078999999999999705884446656543777422799878999987056632078 Q ss_pred -----------HHH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf -----------788-99999988789999958874129989999999607882010122368862679999999999999 Q gi|254780341|r 156 -----------VPG-IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS 223 (281) Q Consensus 156 -----------~~~-i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~ 223 (281) .|+ +.+++..++|.+.|-..-=+++--++..|+|.++|+|.||++|||.||+..=+++-|+-.+-.-+ T Consensus 136 l~~~~iqIiFa~PGiVLaT~FVT~PFVaREliPlmq~qG~~eEeAA~~LGAsgWQtFwrVTLPnIkWgLlYGvvL~nARa 215 (287) T COG4208 136 LEAHDIQIIFAVPGIVLATIFVTCPFVARELIPLMQEQGTDEEEAALTLGASGWQTFWRVTLPNIRWGLLYGVVLTNARA 215 (287) T ss_pred HHHCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCHHH T ss_conf 88579469995474135452221612898987999883984889998726230110256754730799988898716055 Q ss_pred HH----HHHHHHHH-C-CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99----99999997-0-58804999999974078989999999999999999999987421 Q gi|254780341|r 224 LS----MVVVTALV-G-SNGLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPR 278 (281) Q Consensus 224 l~----~vvia~~i-g-~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r 278 (281) .. ..|+.+-| | ++-+--.+..-.+.+|....|++.-...+++++-=-+-...|+| T Consensus 216 mGEFGAVsVVSG~IrG~TnTlPL~VEily~eY~~~~AFa~AslLallAlvTL~lK~~le~r 276 (287) T COG4208 216 MGEFGAVSVVSGHIRGETNTLPLHVEILYNEYNTVGAFAAASLLALLALVTLVLKTILEWR 276 (287) T ss_pred HCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 4167736998445247766523016988764468899999999999999999999999987 No 74 >TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons.. Probab=99.11 E-value=2.7e-09 Score=74.43 Aligned_cols=184 Identities=21% Similarity=0.299 Sum_probs=130.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCCHHHHH---HHHCCCCHHH---HHHHHH Q ss_conf 999999999999997887666776421-012112320235034544201202101100---0000210178---899999 Q gi|254780341|r 91 QETTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFVYLIPA---LVLFGLGMVP---GIVATI 163 (281) Q Consensus 91 ~~~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~---i~~fG~g~~~---~i~a~~ 163 (281) +-..+|+.-+..|+.+|+++|..+++. .++.++..+...-+++++|..|-++=+-.+ +.=||+.-.+ +++++- T Consensus 21 ~gl~~Ti~atalGfaiA~VlGLvfAilRrsa~~~Iswp~~~vvEFiR~TPLLvQlyFlyYVLP~~Gi~LpA~~~GvlglG 100 (218) T TIGR03003 21 EGLKVTIKATALGFAIALVLGLVFAILRRSARKLISWPTAVVVEFIRDTPLLVQLYFLYYVLPDYGISLPALLVGVLGLG 100 (218) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 99999999999999999999999988752156310100100465205680899999999883023331379999899988 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHC-CC Q ss_conf 988789999958874129989999999607882010122368862679999999999999------99999999970-58 Q gi|254780341|r 164 VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS------LSMVVVTALVG-SN 236 (281) Q Consensus 164 i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~------l~~vvia~~ig-~~ 236 (281) +.=--...---..|+++||+..=||++++..|+.|..++|.+|+|.|.|+-.+-.-+..= +|.+++-|+-+ ++ T Consensus 101 lhYa~Y~aEVYR~G~eaVprGQWEAa~AlNlt~~~tyr~iIlPQAippi~Pa~gNYLvAM~KeTPvLSaiTVlE~M~~Ak 180 (218) T TIGR03003 101 LHYAAYAAEVYRAGLEAVPRGQWEAATALNLTARQTYRDIILPQAIPPIVPALGNYLVAMLKETPVLSAITVLELMNQAK 180 (218) T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 88998888888631025887616899985233544576510222100110045789999973274468899999999888 Q ss_pred CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 8049999999740789899999999999999999999874210 Q gi|254780341|r 237 GLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD 279 (281) Q Consensus 237 GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~ 279 (281) -+|..-+ ++.+ +..+++ +.-.++.++.--..++.|+|- T Consensus 181 ~Ig~~tf---rYle-P~TlVG-vfFL~lsii~~~~lrrlearl 218 (218) T TIGR03003 181 SIGEETF---RYLE-PLTLVG-VFFLLLSIILAFLLRRLEARL 218 (218) T ss_pred HHHHCCC---CCCC-CHHHHH-HHHHHHHHHHHHHHHHHHHHC T ss_conf 8862465---1044-078999-999999999999999998619 No 75 >TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysW, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysT (IPR011865 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=99.11 E-value=6.8e-10 Score=78.07 Aligned_cols=197 Identities=20% Similarity=0.228 Sum_probs=142.5 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHCC----CC---- Q ss_conf 2134844999999999999997887666776421012112-32023503454420120210110000002----10---- Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLFG----LG---- 154 (281) Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~fG----~g---- 154 (281) +...+--...--|+-.+.+.+.+=.++|+..+...+|++- -++.+..++|.--++-|.+.-...+.+|| -. T Consensus 40 i~~Pd~~sA~~LTlLv~~I~VPlN~~FGv~~Aw~~~rf~FpGk~lL~t~iDlPFSVSPVvAGL~~~LLyGrqGW~~Plie 119 (275) T TIGR02140 40 ISDPDALSAIKLTLLVALIVVPLNTVFGVAAAWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVLLYGRQGWSQPLIE 119 (275) T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 35955899998988667653307889999999998743167457677777604432248999999998431001362234 Q ss_pred ------H----------------HHH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf ------1----------------788-99999988789999958874129989999999607882010122368862679 Q gi|254780341|r 155 ------M----------------VPG-IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQ 211 (281) Q Consensus 155 ------~----------------~~~-i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~ 211 (281) . .|+ ++|++-.++|.++|-..==+++.=+|..|||.++|||.||++|||.||+..=+ T Consensus 120 dGvrfsG~lG~~l~~~d~~IiF~~PGivLAT~FVT~PFVAREliPvl~~qG~~~EeAAltLGAs~WqtFwrVTLPnIkWg 199 (275) T TIGR02140 120 DGVRFSGWLGPWLEDRDIKIIFSLPGIVLATIFVTLPFVARELIPVLEEQGTEQEEAALTLGASWWQTFWRVTLPNIKWG 199 (275) T ss_pred CCCCEECCCHHHHHHCCCEEEECCHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCHHH T ss_conf 34200042027888628858871413410234325880122001136315946899998727762233356616871578 Q ss_pred HHHHHHHHHHHHHH----HHHHHH-HHC-CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999----999999-970-5880499999997407898999999999999999999998742105 Q gi|254780341|r 212 IVASLTQTIMLSLS----MVVVTA-LVG-SNGLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR 280 (281) Q Consensus 212 i~~Gi~~~~~~~l~----~vvia~-~ig-~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~ 280 (281) ++=|+=.|---++. ..|+.+ .=| ++-|=-.+..-++++|..-+|++.-...++|++-=-+=+-+|||++ T Consensus 200 LlYG~~LcnARamGEFGAVsVVSG~IrG~TnTLPL~Ve~lY~~Y~~~AAFA~AslLal~Al~TL~lK~~LE~r~~ 274 (275) T TIGR02140 200 LLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQSEAAFAAASLLALLALVTLVLKAILERRQG 274 (275) T ss_pred HHHHHHHHCCHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 985467751302002112568852689998763243232324013478899999999999999999999986406 No 76 >COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] Probab=98.94 E-value=2.7e-08 Score=68.43 Aligned_cols=184 Identities=16% Similarity=0.239 Sum_probs=136.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999788766677642101211232-023503454420120210110000002101788999999887899999 Q gi|254780341|r 95 ETLSLVLVSTFISMFIGVPLGVLAAWYPRFY-SIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRL 173 (281) Q Consensus 95 ~Tl~~~~~~~~ia~~igiplGi~~~~~~~~~-~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi~~~ 173 (281) -|+.-.+.-++.+.++|..+|++.|.++-++ +.+.-++|.+-++|++-..+.++.+.|.+...+++++-+.-+|-.+|. T Consensus 97 ~t~G~allvt~~a~l~g~~lGi~AG~t~gl~s~~lnHilDt~lSiPsLLlAiivvaf~gpsl~namfA~~LAllPrfirs 176 (296) T COG4171 97 PTVGGALLVTLAATICGGVLGIFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSNAMFAVWLALLPRFIRS 176 (296) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 23413999999999999999999977777899999999999973589999999999608328889999999999999999 Q ss_pred HHHHHH-CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CC----CCHHHHHHHHH Q ss_conf 588741-299899999996078820101223688626799999999999999999999997--05----88049999999 Q gi|254780341|r 174 TRLGII-STPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV--GS----NGLGVPVLRAL 246 (281) Q Consensus 174 t~~gl~-~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i--g~----~GLG~~i~~a~ 246 (281) .+.+++ +++|||+-++|--|+|....++...+|+..+.+.+-+..+..++.-....-+++ |+ +.-|.++-++. T Consensus 177 iY~avh~EleKeYViaarLdGas~~~lL~~~IlPNI~~~~v~EitrAlsiAiLDI~ALgFl~LGAQ~PspEWGAMlgDsl 256 (296) T COG4171 177 IYSAVHDELEKEYVIAARLDGASTLNLLWFAILPNITAILVTEITRALSIAILDIAALGFLDLGAQLPSPEWGAMLGDSL 256 (296) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCC T ss_conf 99999999887787776526766188999997251279999999999999999888861331257799946777742610 Q ss_pred HHHCHH--H----HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 740789--8----9999999999999999999987421 Q gi|254780341|r 247 NTVDIG--R----GFESGLCIVILAIILDRLFSIPDPR 278 (281) Q Consensus 247 ~~~~~~--~----~~~~~l~Iv~lai~lDri~~~~~~r 278 (281) .....+ . +.+..+.|.+.-+.-|-+.++.++- T Consensus 257 eLiY~APWTV~LPG~AI~~tvllvnl~gdG~r~Ainag 294 (296) T COG4171 257 ELIYVAPWTVMLPGAAIMFTVLLVNLLGDGLRRAINAG 294 (296) T ss_pred CEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 32665451114264799999999999615799999702 No 77 >COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism] Probab=98.89 E-value=1.9e-08 Score=69.30 Aligned_cols=188 Identities=20% Similarity=0.304 Sum_probs=111.8 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCC-HHHHH---HHHCCC--CH Q ss_conf 2134844999999999999997887666776421012--1123202350345442012021-01100---000021--01 Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFV-YLIPA---LVLFGL--GM 155 (281) Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v-~l~p~---i~~fG~--g~ 155 (281) ..+...+.-.-+|+........++...++.+++++.+ +++..|. .+.+.-+|.|. |.+.. ..++.. |. T Consensus 72 F~~~~ff~i~rNTl~~s~~~li~gf~~pI~lAillnElr~~~~kk~----~QT~~y~PhFlSWVVv~~~v~~fls~d~Gi 147 (309) T COG4209 72 FSSPDFFIILRNTLLYSVLFLILGFPVPIILAILLNELRNKVFKKV----VQTISYLPHFLSWVVVSGFVFAFLSIDGGI 147 (309) T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCHHEEEHHHHHHHHHHHCCCCCH T ss_conf 7187399999999999999999953799999999999987778888----766333000210030565788763667518 Q ss_pred HHHHHHHH------HHH----HHHHH-------------HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 78899999------988----78999-------------99588741299899999996078820101223688626799 Q gi|254780341|r 156 VPGIVATI------VFS----IPTSV-------------RLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQI 212 (281) Q Consensus 156 ~~~i~a~~------i~~----~~pi~-------------~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i 212 (281) ...++... .++ ++|++ ..-..++..+||++.|||+.-||||||+.||+.+|+.+|.| T Consensus 148 iN~ll~~~g~~pi~fl~~~~wf~~i~i~~~vWK~~G~~SIiylAai~~Idpt~YEAA~vDGA~rwqqiwhITlP~i~P~i 227 (309) T COG4209 148 INQLLMSLGGDPINFLTNPDWFRPIIIFSSVWKGAGWNSIIYLAAIAGIDPTLYEAAMVDGASRWQQIWHITLPAIRPLI 227 (309) T ss_pred HHHHHHHCCCCCEEHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHH T ss_conf 99999982898310215886026788789888423678899999997279999999980548877888821103231499 Q ss_pred HHHHHHHHHHHHHHHHHHH--HH--CCCCHHHHH--------HH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999--97--058804999--------99-99740789899999999999999999999874210 Q gi|254780341|r 213 VASLTQTIMLSLSMVVVTA--LV--GSNGLGVPV--------LR-ALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD 279 (281) Q Consensus 213 ~~Gi~~~~~~~l~~vvia~--~i--g~~GLG~~i--------~~-a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~ 279 (281) .-=+ .++.....-++ .+ =.+-+|+.+ ++ +.+..|++..-++++-=.++++++=-+.+...||- T Consensus 228 vIll----IL~iG~i~~~gFe~~yll~~~~~~~v~~vldtYVy~~gl~~Gd~s~sTAaGlf~svVg~iLl~~aN~iakr~ 303 (309) T COG4209 228 VILL----ILNIGNIFNAGFELFYLLPNPSGYDVTEVLDTYVYRGGLVTGDYSYSTAAGLFQSVVGFILLFLANRIAKRF 303 (309) T ss_pred HHHH----HHHHHHHHHCCHHHEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999----998523765372560660576687489899999998101357511899999999999999999999999970 No 78 >COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only] Probab=98.89 E-value=3.2e-07 Score=61.99 Aligned_cols=174 Identities=21% Similarity=0.235 Sum_probs=108.3 Q ss_pred HHHHHHHHHHHHHHCCC-CHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHHHHH Q ss_conf 97887666776421012-11232023503454420120210110000002101788999999---887899999588741 Q gi|254780341|r 104 TFISMFIGVPLGVLAAW-YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIV---FSIPTSVRLTRLGII 179 (281) Q Consensus 104 ~~ia~~igiplGi~~~~-~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i---~~~~pi~~~t~~gl~ 179 (281) +.++.++|+..|-..|. ..+++-..+..+++-+++|.+-.++.+-..|..+..-.+....+ .++.-++|+-. +| T Consensus 151 T~~SaliGv~~GA~qGyfgg~vdL~~QRfIEvws~mP~lyllii~as~~~p~f~~ll~i~llf~Wm~lv~vvRaef--Lr 228 (341) T COG4239 151 TLISALIGVLAGALQGYFGGWVDLLGQRFIEVWSGMPTLYLLIILASIFQPNFWWLLGIMLLFGWMSLVGVVRAEF--LR 228 (341) T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HH T ss_conf 9999999998887753413004887705999984472999999999996854799999999999999999999999--98 Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHCHHH Q ss_conf 2998999999960788201012236886267999999999999999999999970------5880499999997407898 Q gi|254780341|r 180 STPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVG------SNGLGVPVLRALNTVDIGR 253 (281) Q Consensus 180 ~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig------~~GLG~~i~~a~~~~~~~~ 253 (281) .-+-|+++|||++|.++++++++..+|.|+-.+.+=+-.-..-+....+.-.+.| ++.||.++.++.++.+.+. T Consensus 229 ~Rn~dYvkAArAlGv~d~~Ii~rHilPnamvatlTflPf~l~~sitTltsLdFLgfglp~gspSLGELl~qgk~nlqapW 308 (341) T COG4239 229 ARNLDYVKAARALGVSDRRIILRHILPNAMVATLTFLPFILSGSITTLTSLDFLGFGLPPGSPSLGELLNQGKNNLQAPW 308 (341) T ss_pred HCCHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCH T ss_conf 60268899999739886503021326298899999878987063323001666526999999678999997652477842 Q ss_pred -HHHHHHHH----HHHHHHHHHHHHHHHHHC Q ss_conf -99999999----999999999999874210 Q gi|254780341|r 254 -GFESGLCI----VILAIILDRLFSIPDPRD 279 (281) Q Consensus 254 -~~~~~l~I----v~lai~lDri~~~~~~r~ 279 (281) ...+-+++ .++.++=|.+-++.+.|+ T Consensus 309 lgit~fv~l~~~lslLvfIgea~Rdafdp~~ 339 (341) T COG4239 309 LGITAFVVLSLLLSLLIFIGEAVRDAFDPRK 339 (341) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 5588999999999999994299886315001 No 79 >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] Probab=98.81 E-value=2.2e-09 Score=74.96 Aligned_cols=110 Identities=25% Similarity=0.364 Sum_probs=76.4 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CC-CCHHH Q ss_conf 7899999588741299899999996078820101223688626799999999999999999999997-----05-88049 Q gi|254780341|r 167 IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV-----GS-NGLGV 240 (281) Q Consensus 167 ~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i-----g~-~GLG~ 240 (281) +|.+....++++-+||+++-+-+.++|+|+||++.+|.+|.|.|+|++.+- +.+.-+|=+.|| |. +=++. T Consensus 596 IP~IFsiAEDAiFSVP~sLs~GSLALGATPWQTL~~VVlltAspGIFSAiM----iG~GRAVGETMIVLMATGNtP~~~~ 671 (733) T COG4590 596 IPTIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFSAIM----IGLGRAVGETMIVLMATGNTPLLDW 671 (733) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHH----HHHHHHCCCEEEEEEECCCCCCCCC T ss_conf 203453422443247854466730136871454014575046841889999----7511110625899972389852122 Q ss_pred HHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999997407----------------898999999999999999999998742105 Q gi|254780341|r 241 PVLRALNTVD----------------IGRGFESGLCIVILAIILDRLFSIPDPRDR 280 (281) Q Consensus 241 ~i~~a~~~~~----------------~~~~~~~~l~Iv~lai~lDri~~~~~~r~~ 280 (281) -|..+.+... +-..|.+.++..........+..+.+.|.| T Consensus 672 nIFeGmRtlaAniAvEmPEseVgs~HyRvLFL~ALvLltFTF~vNtLAE~vRqRLR 727 (733) T COG4590 672 NIFEGMRTLAANIAVEMPESEVGSAHYRVLFLAALVLLTFTFAVNTLAEWVRQRLR 727 (733) T ss_pred CHHHHHHHHHHHHHHCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 28777888765521217654406633426899999999999999899999999999 No 80 >COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only] Probab=98.54 E-value=6.5e-05 Score=48.06 Aligned_cols=189 Identities=20% Similarity=0.294 Sum_probs=102.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHCCCHHHH---HHHHCCC-CCHHHH----------HHHHCCC Q ss_conf 999999999999997887666776421012---1123202350345---4420120-210110----------0000021 Q gi|254780341|r 91 QETTETLSLVLVSTFISMFIGVPLGVLAAW---YPRFYSIIRLFLD---SMQTIPT-FVYLIP----------ALVLFGL 153 (281) Q Consensus 91 ~~~~~Tl~~~~~~~~ia~~igiplGi~~~~---~~~~~~~~~p~l~---~~~~iP~-~v~l~p----------~i~~fG~ 153 (281) +.-..++.....+.+.++.+|+......-+ -.|.++.+...-. -+..+|- |++++. +--++|+ T Consensus 56 ~a~~~Sikis~aSsl~G~lig~~~a~alv~~~~ps~ir~~lltfsgvaSnFaGVPLAfAFiatLG~~G~vtv~Lk~~~g~ 135 (282) T COG4132 56 QAYWISIKISFASSLLGLLIGFLLAWALVLGGLPSWIRSFLLTFSGVASNFAGVPLAFAFIATLGRNGLVTVFLKTLGGF 135 (282) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC T ss_conf 99999986799998899999999999999779478888778423145541368719999999965441699999984274 Q ss_pred C-------HHH---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0-------178---899999988789999958874129989999999607882010122368862679999999999999 Q gi|254780341|r 154 G-------MVP---GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS 223 (281) Q Consensus 154 g-------~~~---~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~ 223 (281) . ..+ -.+.-.-+..|.++....-++++..+|.+|+++.+|++.||..++|.+|.-.|+.+.-.-.-..-+ T Consensus 136 ~~~~~~fnl~s~~GltitY~yFQIPL~vlil~PA~dgLk~ewreaa~~LGa~~~qYWrmva~PiL~PsllGt~vlLfANA 215 (282) T COG4132 136 NLYSTGFNLLSFFGLTITYVYFQIPLMVLILTPAFDGLKKEWREAAAILGATGWQYWRMVALPILWPSLLGTFVLLFANA 215 (282) T ss_pred CEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 30046504888625257757886568999897666667899999999867742899999989985199988899999987 Q ss_pred HH-HHHHHHHHCCC-CHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99-99999997058-80499999997407----89899999999999999999999874210 Q gi|254780341|r 224 LS-MVVVTALVGSN-GLGVPVLRALNTVD----IGRGFESGLCIVILAIILDRLFSIPDPRD 279 (281) Q Consensus 224 l~-~vvia~~ig~~-GLG~~i~~a~~~~~----~~~~~~~~l~Iv~lai~lDri~~~~~~r~ 279 (281) +. .+.+=++-|++ .+=-....++-+.| ...+.+-.+.+..+.-+..-+-.+..||. T Consensus 216 fGA~ATayaLtgsslNivPI~l~AqIrGDVl~np~lg~ALa~~mi~it~v~n~~~~wlr~rs 277 (282) T COG4132 216 FGAYATAYALTGSSLNIVPILLYAQIRGDVLHNPNLGYALAFGMIVITGVANLLYIWLRKRS 277 (282) T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 75778787750687541689999998214568951899999999999999999999999877 No 81 >COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only] Probab=98.53 E-value=2.4e-07 Score=62.71 Aligned_cols=182 Identities=23% Similarity=0.293 Sum_probs=134.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCH------------------- Q ss_conf 9999999978876667764210121--1232023503454420120210110000002101------------------- Q gi|254780341|r 97 LSLVLVSTFISMFIGVPLGVLAAWY--PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGM------------------- 155 (281) Q Consensus 97 l~~~~~~~~ia~~igiplGi~~~~~--~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~------------------- 155 (281) ..+-+-++++.-++.+|+|+.-+.+ .+.+-.-..++.+-+++|+|.+.+.++.+|.-|. T Consensus 136 iSlGlw~tli~YliSIPLGI~KAv~~gs~fDvwsS~viiigyAiP~FlfailLiVlFaGGsy~dwFPLRGLvSdnf~~L~ 215 (364) T COG4174 136 ISLGLWSTLIIYLISIPLGIRKAVRNGSRFDVWSSAVIIIGYAIPAFLFAILLIVLFAGGSYFDWFPLRGLVSDNFDQLS 215 (364) T ss_pred EEHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHCC T ss_conf 87689999999997433328888747984202211368873242799999999974158761012001463458834347 Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ------------788999999887899999588-7412998999999960788201012236886267999999999999 Q gi|254780341|r 156 ------------VPGIVATIVFSIPTSVRLTRL-GIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIML 222 (281) Q Consensus 156 ------------~~~i~a~~i~~~~pi~~~t~~-gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~ 222 (281) .-.+.+.++.++...+..|-+ =+.++.+.+.-.||+-|.|+.|++++....+|+=-+.+|.-.+..- T Consensus 216 ~~~ki~DYlWH~tLPv~a~v~g~FAt~TlLtKNSFldEi~KqYVvTARAKGlserrvly~HVFRNAMLlviaGfP~afis 295 (364) T COG4174 216 WYGKITDYLWHITLPVLALVLGGFATLTLLTKNSFLDEIRKQYVVTARAKGLSERRVLYKHVFRNAMLLVIAGFPAAFIS 295 (364) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 27888999999888899999866777888753058999764526632315885545269988634278876178099999 Q ss_pred HH-HH-HHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH----HHHHHHHHHH Q ss_conf 99-99-999999705880499999997407898999999999999999----9999987421 Q gi|254780341|r 223 SL-SM-VVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILAIIL----DRLFSIPDPR 278 (281) Q Consensus 223 ~l-~~-vvia~~ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~l----Dri~~~~~~r 278 (281) ++ .. ..|+-+..-+|||.+-+++.-+.|++.+|.....-.+++.+. |-.-.+.+.| T Consensus 296 ~FFTgSLLIE~iFSLdGlGllgyea~v~RDYPvvfgtLyIftL~GL~~~lisDl~yt~vDPR 357 (364) T COG4174 296 MFFTGSLLIEVIFSLDGLGLLGYEAVVSRDYPVVFGTLYIFTLIGLLVSLISDLTYTLVDPR 357 (364) T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHEEEEECCC T ss_conf 99712479999872366211106878647886421668999999999999754417864575 No 82 >COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only] Probab=98.41 E-value=3.6e-05 Score=49.61 Aligned_cols=141 Identities=13% Similarity=0.200 Sum_probs=88.8 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCC--HHHHH-HHHCCC--CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9978876667764210121123202350345442012021--01100-000021--017889999998878999995887 Q gi|254780341|r 103 STFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFV--YLIPA-LVLFGL--GMVPGIVATIVFSIPTSVRLTRLG 177 (281) Q Consensus 103 ~~~ia~~igiplGi~~~~~~~~~~~~~p~l~~~~~iP~~v--~l~p~-i~~fG~--g~~~~i~a~~i~~~~pi~~~t~~g 177 (281) +-.++++.++..=.+-+.+.|-....--.+-.+ +|.+. +-.-. ..+.|. +..+.+-+...+.+|-+...-... T Consensus 360 asslALll~iL~le~~~~~qR~~~~~~l~LP~L--lP~lslvfG~qvL~L~~~l~~~w~~Vvw~H~~fv~P~v~l~Ls~p 437 (551) T COG4135 360 ASSLALLLLILWLEWGGIPQRRQAYLWLWLPIL--LPALSLVFGQQVLALWLGLDGSWTAVVWGHLLFVMPWVLLILSPP 437 (551) T ss_pred HCHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 045999999999995798320110688888887--667789988999999962687439999999999999999984745 Q ss_pred HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 41299899999996078820101223688626799999999999999999999997058804999999 Q gi|254780341|r 178 IISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRA 245 (281) Q Consensus 178 l~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~GLG~~i~~a 245 (281) =+++|++.++-|+++|-|+||++++|.+|.-.|..+...-.+...+++.-.-.-++|+|-+-..-+++ T Consensus 438 Wq~~dsrf~kIA~~lGks~~~Iff~vklPLlfra~L~A~AVGfaVsiaqYlPTL~lG~GRltTiTTEA 505 (551) T COG4135 438 WQRIDSRFIKIAQTLGKSRAKIFFYVKLPLLFRACLIAFAVGFSVSIAQYLPTLWLGAGRLTTITTEA 505 (551) T ss_pred HHHHCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHH T ss_conf 75527089999987083066788875045767999999998767429976147822677664111345 No 83 >TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents thiamine ABC transporter, permease protein in bacteria, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane. The protein belongs to the larger ABC transport system. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). Thiamine pyrophosphate (TPP)1 is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and -ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=98.05 E-value=0.00087 Score=41.31 Aligned_cols=188 Identities=20% Similarity=0.236 Sum_probs=127.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHH-------------CC-- Q ss_conf 44999999999999997887666776421012112-320235034544201202101100000-------------02-- Q gi|254780341|r 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVL-------------FG-- 152 (281) Q Consensus 89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~-------------fG-- 152 (281) +|.-..=+...+..++++++..|+.++=++.+.|. .++.+..++..--..|.+|..--++-. || T Consensus 45 L~H~~~FSF~QAlLS~~LS~~~~~lLARALy~~~F~G~~~LL~L~~lTl~LP~LV~~FG~~~~YG~~GWLA~L~~~lGl~ 124 (519) T TIGR01253 45 LQHLVLFSFGQALLSALLSVIFALLLARALYRKRFLGKKALLKLMALTLVLPVLVVVFGLLSVYGRSGWLATLANLLGLE 124 (519) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC T ss_conf 89999999899999999999999999999740688426899999999999999999997776405753799999871875 Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf -----101788999999887899999588741299899999996078820101223688626799999999999999999 Q gi|254780341|r 153 -----LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMV 227 (281) Q Consensus 153 -----~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~v 227 (281) +|-...++|+..+.+|.-.+...++++++|-|.++.|.-+|...||-++-|+-|--..++.--...-.|+|++-- T Consensus 125 W~~~~YGL~GIL~AH~FFN~PlA~~LlLQ~L~~IP~~QRQLAAQL~l~~W~F~~lVEWP~lR~Q~~P~~~LIFMLCF~SF 204 (519) T TIGR01253 125 WTFSIYGLSGILLAHLFFNLPLAARLLLQALESIPYEQRQLAAQLNLRSWQFVKLVEWPVLRRQILPVAALIFMLCFASF 204 (519) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECHHHHHHCCHHHHHHHHHHHHHH T ss_conf 03433415799999999615699999999874178157799997167753056663051233211258999999998889 Q ss_pred -HHHHHHCCC---CHHHHHHHHHHHHCHHHHHHHHHH----HHHHHHH--HHHHHHHHHH Q ss_conf -999997058---804999999974078989999999----9999999--9999998742 Q gi|254780341|r 228 -VVTALVGSN---GLGVPVLRALNTVDIGRGFESGLC----IVILAII--LDRLFSIPDP 277 (281) Q Consensus 228 -via~~ig~~---GLG~~i~~a~~~~~~~~~~~~~l~----Iv~lai~--lDri~~~~~~ 277 (281) ++=++=|++ -+-.-|++|... |+|..=+|.++ +.+++.+ -+|+.+..+. T Consensus 205 ~~VL~LGGGPQ~TT~E~AIYQA~~y-~yD~~~AAllAlLQ~V~CL~L~~L~~RlS~~~~~ 263 (519) T TIGR01253 205 AVVLSLGGGPQATTLELAIYQALLY-DYDLAKAALLALLQFVFCLILVLLSSRLSKAIAN 263 (519) T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9987358984068999999999873-1684689999999999999999998878764057 No 84 >COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Probab=97.99 E-value=2.6e-05 Score=50.52 Aligned_cols=121 Identities=21% Similarity=0.212 Sum_probs=72.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC Q ss_conf 88999999887899999588741299899999996078820101223688626799999999999999-99999999705 Q gi|254780341|r 157 PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSL-SMVVVTALVGS 235 (281) Q Consensus 157 ~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l-~~vvia~~ig~ 235 (281) +-..+...|.-..+.-.+..|++.|++...|+|+++|.++-++++-|..|+|+.-|.--+..-. +.+ .....|--+|- T Consensus 268 aL~laLs~YTaaFIAEiVRaGI~~VskGQtEAa~sLGL~~~~t~RlVivPQAlRiIIPPLTSQY-LNLtKNSSLAiAIGY 346 (397) T COG4597 268 ALFLALSFYTAAFIAEIVRAGIQAVSKGQTEAARSLGLRSSLTLRLVIVPQALRIIIPPLTSQY-LNLTKNSSLAIAIGY 346 (397) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCEEECCCCCHHH-HHHCCCCHHHHCCCC T ss_conf 9999999999999999998765025766177898628997544799984110156417621888-733235423200277 Q ss_pred CCHHHHHHHHHHHHCHHHHHHH--HHHHHH--HHHHHHHHHHHHHHHCC Q ss_conf 8804999999974078989999--999999--99999999998742105 Q gi|254780341|r 236 NGLGVPVLRALNTVDIGRGFES--GLCIVI--LAIILDRLFSIPDPRDR 280 (281) Q Consensus 236 ~GLG~~i~~a~~~~~~~~~~~~--~l~Iv~--lai~lDri~~~~~~r~~ 280 (281) +.+= ...+.-.+++++.... ...++. +.....-++++..+|.. T Consensus 347 pDlv--~vagT~lNQTGQAvEvv~i~m~vYL~lSL~tSl~MN~~N~rma 393 (397) T COG4597 347 PDLV--AVAGTVLNQTGQAVEVVAIWMLVYLSLSLTTSLLMNWYNRRMA 393 (397) T ss_pred CCEE--EEECEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7668--8733022455607899999999999999999999999876543 No 85 >TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents thiamine ABC transporter, permease protein in bacteria, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane. The protein belongs to the larger ABC transport system. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). Thiamine pyrophosphate (TPP)1 is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and -ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=97.87 E-value=0.00059 Score=42.32 Aligned_cols=186 Identities=14% Similarity=0.242 Sum_probs=134.2 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-----HHHCCCHHHHHHHHCCCCCHHHHHHHHC----CCC Q ss_conf 2134844999999999999997887666776421012112-----3202350345442012021011000000----210 Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-----FYSIIRLFLDSMQTIPTFVYLIPALVLF----GLG 154 (281) Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-----~~~~~~p~l~~~~~iP~~v~l~p~i~~f----G~g 154 (281) ...+.+|+....++.++..+-++|++..+.+=..-.+-++ ...+++--=-+.-++|.+|...-...+. |.. T Consensus 316 ~~~~~LW~AL~~SL~IA~~~~~L~~~l~~~LL~~SR~L~~~~~~~~~Q~~~~~GM~ILA~P~~VLA~GlFLLL~~~~~~~ 395 (519) T TIGR01253 316 LANSVLWRALGYSLRIALLAALLALVLAIALLLLSRRLRALQKQKISQVLINAGMLILAIPILVLATGLFLLLNDRIFLN 395 (519) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 73247899998899999999999999999999875889999878898899984289999779999998999861346777 Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1---7889999998878999995887412998999999960788201012236886267999999999999999999999 Q gi|254780341|r 155 M---VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTA 231 (281) Q Consensus 155 ~---~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~ 231 (281) . .-.++.=++.++|.+.|.-.+=+|+.-+.|.+..+|+|-..||++.-|++-+-...+--.+-.+..+|+..-.+-+ T Consensus 396 ~~~~~IV~F~NAL~A~Py~L~~L~~P~~~~~~~Y~~LC~SLGI~GW~Rl~~~E~~~L~~PL~~AlAl~~~LS~GDF~~~A 475 (519) T TIGR01253 396 IDLDIIVVFTNALSAIPYVLKVLEAPFRDITARYENLCNSLGIVGWSRLKLVELKALKAPLAYALALALVLSLGDFTVVA 475 (519) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE T ss_conf 54201013454777635999984051578899998755321733004778887999877999999999998521156200 Q ss_pred HHCCC---CHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHH Q ss_conf 97058---804999999974-078989999999999999999 Q gi|254780341|r 232 LVGSN---GLGVPVLRALNT-VDIGRGFESGLCIVILAIILD 269 (281) Q Consensus 232 ~ig~~---GLG~~i~~a~~~-~~~~~~~~~~l~Iv~lai~lD 269 (281) +.|.+ .|=++.++...+ .+.|.+..|++...+.++.+. T Consensus 476 LFGN~~F~~LP~~LYQQ~G~YR~QD~AVTA~ILLLLC~~LF~ 517 (519) T TIGR01253 476 LFGNDDFRSLPFLLYQQLGSYRSQDAAVTALILLLLCFLLFA 517 (519) T ss_pred EECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 103753211378999872353361389999999999999985 No 86 >TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems. The region covered by this entry generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=96.20 E-value=0.02 Score=33.05 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=59.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHCCCHHHHHHHHCCCCCHHHHH---HHHCCCCH---HHHHH Q ss_conf 844999999999999997887666776421-012112320235034544201202101100---00002101---78899 Q gi|254780341|r 88 GYWQETTETLSLVLVSTFISMFIGVPLGVL-AAWYPRFYSIIRLFLDSMQTIPTFVYLIPA---LVLFGLGM---VPGIV 160 (281) Q Consensus 88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~-~~~~~~~~~~~~p~l~~~~~iP~~v~l~p~---i~~fG~g~---~~~i~ 160 (281) .+|+-...|+...+.|..+|.++|+.+|++ .+++|.+++...-+++++|++|-++-+..+ ...+|+.- .++++ T Consensus 4 ~l~~G~~~Tl~~~~~~~~~g~~~Gl~~al~r~s~~~~l~~~~~~Y~~~~Rg~PlLvqlf~~yfgLP~~Gi~l~~~~Aa~~ 83 (99) T TIGR01726 4 FLLKGLLLTLLISVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLSPLTAAVI 83 (99) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH T ss_conf 89999999999999999999999999999987135999999999999996207999999999843542770677899999 Q ss_pred HHHHHHH Q ss_conf 9999887 Q gi|254780341|r 161 ATIVFSI 167 (281) Q Consensus 161 a~~i~~~ 167 (281) +..++.- T Consensus 84 al~l~~~ 90 (99) T TIGR01726 84 ALTLFEG 90 (99) T ss_pred HHHHHHH T ss_conf 9999879 No 87 >PRK13875 conjugal transfer protein TrbL; Provisional Probab=70.42 E-value=6.9 Score=17.82 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=44.3 Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCHHHHH----HHHH Q ss_conf 99999999999---999999999972077689999999999998411-330288887754221348449999----9999 Q gi|254780341|r 27 EWFCNILSFIL---LKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRS-ITIAVGTAMGLLLIIKQGYWQETT----ETLS 98 (281) Q Consensus 27 ~~~~~~i~~~l---~~~l~~~~~~l~~~p~~~~i~~v~~l~~~~~~~-~~~~~~~~~~~~~i~~~g~W~~~~----~Tl~ 98 (281) +++.+.++... +.+.|..+-......|.++++.++.++++..-. ..+-+.+..++.++- +++|.++- .-+. T Consensus 120 ~Pll~~i~~l~G~~~~f~n~~~i~vl~lAwl~VilAFfilAiQlFvtliEFkLtTLaGFVLvP-Fgl~~kTaFlAErvLG 198 (443) T PRK13875 120 RPLLESISDLMGFPSFFENFIQIVVLLLAWLLVLLAFFILAIQLFVTLIEFKLTTLAGFVLIP-FALFGKTAFLAERVLG 198 (443) T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHCCCHHHHHHHHHH T ss_conf 699999988637088997599999999999999999999999999999999999998999603-2531514899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999788766677642101 Q gi|254780341|r 99 LVLVSTFISMFIGVPLGVLAA 119 (281) Q Consensus 99 ~~~~~~~ia~~igiplGi~~~ 119 (281) .++.+-+--+++++.+||--. T Consensus 199 nVisSGiKvmVLAvIvGIGst 219 (443) T PRK13875 199 NVVSSGIKVLVLAVIVGIGST 219 (443) T ss_pred HHHHHHHHHHHHHHHHHHCHH T ss_conf 999864799999999970347 No 88 >pfam10767 DUF2593 Protein of unknown function (DUF2593). This family of proteins appear to be restricted to Enterobacteriaceae. Some members in the family are annotated as YbjO however currently there is no known function. Probab=60.89 E-value=11 Score=16.70 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=4.6 Q ss_pred CHHHHHHHHHHHH Q ss_conf 7689999999999 Q gi|254780341|r 52 PPLVFVCVVSLLV 64 (281) Q Consensus 52 p~~~~i~~v~~l~ 64 (281) |.++.++..+.++ T Consensus 4 Pv~V~VAg~AIIa 16 (144) T pfam10767 4 PVPVQVAGTAIIA 16 (144) T ss_pred CCHHHHHHHHHHH T ss_conf 7025999999999 No 89 >TIGR01495 ETRAMP early transcribed membrane protein (ETRAMP) family; InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii . A homolog from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane . Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.. Probab=57.60 E-value=8 Score=17.44 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=17.2 Q ss_pred HHHH-HHHHHHHHHHCCC-CHHHHHHH Q ss_conf 9999-9999999997058-80499999 Q gi|254780341|r 220 IMLS-LSMVVVTALVGSN-GLGVPVLR 244 (281) Q Consensus 220 ~~~~-l~~vvia~~ig~~-GLG~~i~~ 244 (281) +++| -....+|.++|++ |||++... T Consensus 65 ilySl~~as~lAlL~g~~~GlG~y~~~ 91 (99) T TIGR01495 65 ILYSLSIASGLALLVGAGVGLGYYYKK 91 (99) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999899999999999999999998752 No 90 >COG2177 FtsX Cell division protein [Cell division and chromosome partitioning] Probab=53.51 E-value=14 Score=15.95 Aligned_cols=57 Identities=16% Similarity=0.017 Sum_probs=33.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998878999995887412998999999960788201012236886267999999999999999 Q gi|254780341|r 161 ATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS 225 (281) Q Consensus 161 a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~ 225 (281) +....+...++.||.-.--.-.++-+|..|-.|||+|-+.+ |....|...++.-++. T Consensus 175 ~ll~~~~vllI~NtiR~~i~sRr~eIeVmklvGAt~~fI~~--------PFl~~g~~~gl~Ga~~ 231 (297) T COG2177 175 ILLALAAVLLIGNTIRLAIFSRRREIEVMKLVGATDSFIRR--------PFLYEGMLIGLLGALI 231 (297) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHHHHHHHHHH T ss_conf 99999999999999999999532379999982641188871--------9999999999999999 No 91 >TIGR00840 b_cpa1 sodium/hydrogen exchanger 3; InterPro: IPR004709 Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport . ; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane. Probab=42.57 E-value=21 Score=14.91 Aligned_cols=37 Identities=19% Similarity=0.446 Sum_probs=14.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCC---CCHHHHH--CCCHHHHHH Q ss_conf 999999788766677642101---2112320--235034544 Q gi|254780341|r 99 LVLVSTFISMFIGVPLGVLAA---WYPRFYS--IIRLFLDSM 135 (281) Q Consensus 99 ~~~~~~~ia~~igiplGi~~~---~~~~~~~--~~~p~l~~~ 135 (281) ..+++...++++|+..|++.+ |+..-.+ .++|.+.++ T Consensus 213 fF~v~~G~G~L~Gv~~G~~~af~~rft~~~rYP~IEP~fvl~ 254 (627) T TIGR00840 213 FFVVTLGVGLLVGVVFGFLVAFITRFTKHIRYPVIEPLFVLL 254 (627) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH T ss_conf 666645488999999999999997510452046520489999 No 92 >COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only] Probab=37.06 E-value=26 Score=14.39 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=31.4 Q ss_pred HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 995887412998999999960788201012236886267999999999 Q gi|254780341|r 172 RLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT 219 (281) Q Consensus 172 ~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~ 219 (281) .+...+--..+++.+|+--++|+|++|-.+...=-+-.+.+.--+|+. T Consensus 143 ~~~l~~~i~~~~~eie~~LsLGaTp~~A~~~~~r~Air~aliPtins~ 190 (256) T COG0390 143 YERLVSEIISEKDEIEAKLSLGATPKEASRPYIRSAIRAALIPTINSM 190 (256) T ss_pred HHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH T ss_conf 888899974038999999852898899979999998888640550255 No 93 >PRK11026 ftsX cell division protein FtsX; Provisional Probab=36.73 E-value=26 Score=14.36 Aligned_cols=51 Identities=14% Similarity=-0.030 Sum_probs=31.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998878999995887412998999999960788201012236886267999999 Q gi|254780341|r 162 TIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASL 216 (281) Q Consensus 162 ~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi 216 (281) ....+...++.||.-=--.-.++-+|..|-.|||+|-+ +.|.-.-+++.|+ T Consensus 188 ll~~a~~liI~NTIRL~i~sRr~EI~ImkLVGAT~~FI----r~PFl~eG~~~Gl 238 (309) T PRK11026 188 LMVAAVFLVIGNSVRLSIFSRRDTINVMKLIGATDGFI----LRPFLYGGALLGF 238 (309) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH----HCHHHHHHHHHHH T ss_conf 99999999999999999998799999999938887889----7609999999999 No 94 >pfam02954 HTH_8 Bacterial regulatory protein, Fis family. Probab=33.88 E-value=29 Score=14.08 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=25.7 Q ss_pred HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 5887412998999999960788201012236 Q gi|254780341|r 174 TRLGIISTPPILKEAACAFGATPFQVFRKVE 204 (281) Q Consensus 174 t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~ 204 (281) ...+++.-+-+.-++|+.+|.|+....+|+. T Consensus 10 I~~aL~~~~gn~~~aA~~LGisr~tL~~kmk 40 (42) T pfam02954 10 IEAALERTGGNKSKAARLLGISRRTLYRKLK 40 (42) T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999499799999997969999999997 No 95 >PRK10132 hypothetical protein; Provisional Probab=33.64 E-value=24 Score=14.55 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHHHHHCCCC Q ss_conf 9978876667764210121 Q gi|254780341|r 103 STFISMFIGVPLGVLAAWY 121 (281) Q Consensus 103 ~~~ia~~igiplGi~~~~~ 121 (281) |+.++..+|+.+|+++++. T Consensus 89 sVGigAAVGvvlG~LLsRR 107 (108) T PRK10132 89 SVGTAAAVGIFIGALLSLR 107 (108) T ss_pred HHHHHHHHHHHHHHHHHCC T ss_conf 4769999999999999703 No 96 >TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative; InterPro: IPR011744 This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme .. Probab=33.51 E-value=27 Score=14.30 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=20.6 Q ss_pred CCCHHHHHHHHHHH-HCCCCCHHHH-HHHHHHHHHHHHHHHH Q ss_conf 13302888877542-2134844999-9999999999978876 Q gi|254780341|r 70 SITIAVGTAMGLLL-IIKQGYWQET-TETLSLVLVSTFISMF 109 (281) Q Consensus 70 ~~~~~~~~~~~~~~-i~~~g~W~~~-~~Tl~~~~~~~~ia~~ 109 (281) ||..|+.+.+|... +.....|+.. -=||.+.++|+.++++ T Consensus 49 GWsvAIPTLlG~A~GiWlD~hyPs~fSWTLtmli~Gv~~GCL 90 (100) T TIGR02230 49 GWSVAIPTLLGVALGIWLDKHYPSSFSWTLTMLIVGVVVGCL 90 (100) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 899998889999873321146898703899999999987443 No 97 >TIGR01948 rnfE electron transport complex, RnfABCDGE type, E subunit; InterPro: IPR010968 The six-subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the E subunit.; GO: 0006118 electron transport, 0019866 organelle inner membrane. Probab=32.34 E-value=31 Score=13.93 Aligned_cols=31 Identities=26% Similarity=0.526 Sum_probs=24.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCH Q ss_conf 26799999999999999999999---99705880 Q gi|254780341|r 208 AIPQIVASLTQTIMLSLSMVVVT---ALVGSNGL 238 (281) Q Consensus 208 a~P~i~~Gi~~~~~~~l~~vvia---~~ig~~GL 238 (281) -+|+++.|+-.++++.+++++++ |+.|+|-+ T Consensus 120 vl~S~lDG~g~GlGFT~~L~vlG~~REiLG~Gtl 153 (204) T TIGR01948 120 VLPSILDGLGMGLGFTLVLVVLGSIREILGNGTL 153 (204) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 1788998999999999999999999998606822 No 98 >pfam06553 BNIP3 BNIP3. This family consists of several mammalian specific BCL2/adenovirus E1B 19-kDa protein-interacting protein 3 or BNIP3 sequences. BNIP3 belongs to the Bcl-2 homology 3 (BH3)-only family, a Bcl-2-related family possessing an atypical Bcl-2 homology 3 (BH3) domain, which regulates PCD from mitochondrial sites by selective Bcl-2/Bcl-XL interactions. BNIP3 family members contain a C-terminal transmembrane domain that is required for their mitochondrial localisation, homodimerization, as well as regulation of their pro-apoptotic activities. BNIP3-mediated apoptosis has been reported to be independent of caspase activation and cytochrome c release and is characterized by early plasma membrane and mitochondrial damage, prior to the appearance of chromatin condensation or DNA fragmentation. Probab=28.87 E-value=35 Score=13.57 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCH Q ss_conf 9999999999788766677642101211 Q gi|254780341|r 95 ETLSLVLVSTFISMFIGVPLGVLAAWYP 122 (281) Q Consensus 95 ~Tl~~~~~~~~ia~~igiplGi~~~~~~ 122 (281) +=|+..+.+.+++.++|+.+|++.+|.- T Consensus 162 e~L~vflpSl~lShlL~~GlGiyIgkRl 189 (197) T pfam06553 162 EFLKVFLPTLLLSHLLGLGLGIYIGKRL 189 (197) T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEECCC T ss_conf 9999999999999998723224773321 No 99 >PRK12405 electron transport complex RsxE subunit; Provisional Probab=27.82 E-value=37 Score=13.46 Aligned_cols=31 Identities=19% Similarity=0.391 Sum_probs=22.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCH Q ss_conf 26799999999999999999999---99705880 Q gi|254780341|r 208 AIPQIVASLTQTIMLSLSMVVVT---ALVGSNGL 238 (281) Q Consensus 208 a~P~i~~Gi~~~~~~~l~~vvia---~~ig~~GL 238 (281) ..|+++.|+..++++.+..++++ |+.|+|-+ T Consensus 124 ~~~s~~Dglg~GlGft~~L~~lg~iREllG~Gtl 157 (224) T PRK12405 124 VLLSALDGLGMGLGFTLALVVLGAIREILGNGTL 157 (224) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 5789999999999899999999999999827861 No 100 >pfam03649 UPF0014 Uncharacterized protein family (UPF0014). Probab=27.76 E-value=37 Score=13.45 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=32.1 Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999588741299899999996078820101223688626799999999 Q gi|254780341|r 171 VRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQ 218 (281) Q Consensus 171 ~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~ 218 (281) ...-.+++++ +++.+|+..++|+|+||-.....-.+..-.+.-.+|+ T Consensus 145 l~rl~~~l~~-~~~~iE~~LaLGAt~~~A~~~~~r~Air~aliP~in~ 191 (250) T pfam03649 145 LDKLIDMVKS-ERDIIWGYLALGATPIQALAPFIRNAIRAALIPTVNR 191 (250) T ss_pred HHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999998-7999999998799989999999999999985626999 No 101 >TIGR01939 nqrD NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; InterPro: IPR011292 Na(+)-translocating NADH-quinone reductase (NQR) functions as a primary Na(+) pump in the respiratory chain of Gram-negative marine and halophilic bacteria . The NQR complex reduces ubiquinone-1 to ubiquinol by two successive reactions, which involve the co-factor FAD. The NQR complex is composed of six subunits, this entry representing subunit D (NqrD).; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006118 electron transport, 0009276 1-2nm peptidoglycan-based cell wall. Probab=25.76 E-value=40 Score=13.23 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=38.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHCCC-CHHHHHHHHHH---------HHCHHHHHHHHHHHHHHHHHH Q ss_conf 6799999999999999999999---997058-80499999997---------407898999999999999999 Q gi|254780341|r 209 IPQIVASLTQTIMLSLSMVVVT---ALVGSN-GLGVPVLRALN---------TVDIGRGFESGLCIVILAIIL 268 (281) Q Consensus 209 ~P~i~~Gi~~~~~~~l~~vvia---~~ig~~-GLG~~i~~a~~---------~~~~~~~~~~~l~Iv~lai~l 268 (281) .|+.+.|+-.++++.+..++++ |+.|+| =+|..+.-... +.+.+.+..+=-+-.++|+++ T Consensus 127 ~~sflDGiGnGLGYG~vL~~i~~~REL~G~G~L~g~~v~P~~~~~~~g~PdGY~~nGLm~LaPsAffl~g~~I 199 (211) T TIGR01939 127 VPSFLDGIGNGLGYGWVLVVIGFFRELFGSGKLLGIRVIPEKLVASGGWPDGYQNNGLMLLAPSAFFLIGIVI 199 (211) T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 3677622100268999999999999874046011222121344215888764211303452058999999999 No 102 >PRK06558 V-type ATP synthase subunit K; Validated Probab=25.27 E-value=41 Score=13.17 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=8.1 Q ss_pred CCCHHHHHHHHHHHHHHHHH Q ss_conf 78820101223688626799 Q gi|254780341|r 193 GATPFQVFRKVELPFAIPQI 212 (281) Q Consensus 193 Gas~~q~l~~V~lP~a~P~i 212 (281) ...+-+.+-|..+|+++|+. T Consensus 43 ~~e~P~~fgk~iil~~lpgt 62 (155) T PRK06558 43 LTEEPEKFGKALILQLLPGT 62 (155) T ss_pred HHCCHHHHHHHHHHHHHHHH T ss_conf 84485888999999996646 No 103 >PRK09699 D-allose transporter subunit; Provisional Probab=25.13 E-value=41 Score=13.16 Aligned_cols=268 Identities=17% Similarity=0.159 Sum_probs=109.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 0066777999999999999645-999999999999999999999720776899999999999984113302888877542 Q gi|254780341|r 5 IQAPIPLGDYLQEFFVCLTQNG-EWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLL 83 (281) Q Consensus 5 ~~~~ip~~~~i~~~~~wl~~~~-~~~~~~i~~~l~~~l~~~~~~l~~~p~~~~i~~v~~l~~~~~~~~~~~~~~~~~~~~ 83 (281) ++++..+.++.++.=-.+.--. --.|..++..--.-.+...+.+...+...++. +....-...++...+.....++.- T Consensus 12 ~~~~f~~~~f~~~~g~~~vl~~l~~vf~~~~~~~Fls~~Nl~~il~~~a~l~i~A-lG~t~Vii~GgiDLSvgs~~~l~~ 90 (325) T PRK09699 12 EKKPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIG-MGEFFAILVAGIDLSVGAILALSG 90 (325) T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 5058789999999899999999999999977898898899999999999999999-999999993786152999999999 Q ss_pred HCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHH---HHH-----CCCHHHHHHHHCCCCCHHHHHHHHCCCC Q ss_conf 21348449999999-99999997887666776421012112---320-----2350345442012021011000000210 Q gi|254780341|r 84 IIKQGYWQETTETL-SLVLVSTFISMFIGVPLGVLAAWYPR---FYS-----IIRLFLDSMQTIPTFVYLIPALVLFGLG 154 (281) Q Consensus 84 i~~~g~W~~~~~Tl-~~~~~~~~ia~~igiplGi~~~~~~~---~~~-----~~~p~l~~~~~iP~~v~l~p~i~~fG~g 154 (281) +....+..+..... .....+..++..+|..-|.+..+.+- +-+ ..+-+......-++....++....++-+ T Consensus 91 ~~~~~l~~~~~~~~~~a~l~~l~~g~~iG~iNG~lv~~~~ip~fIvTLgt~~i~~Gl~~~~t~g~~i~~~~~~~~~~~~~ 170 (325) T PRK09699 91 MVTAKLMLAGVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAA 170 (325) T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHCC T ss_conf 99999998478619999999999999999998597775087759999999999998888321895125799899998623 Q ss_pred H-----HHHHHHHHHH-HHHHHHHHHHHHHHCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------- Q ss_conf 1-----7889999998-8789999958874129-98999999960788201012236886267999999999-------- Q gi|254780341|r 155 M-----VPGIVATIVF-SIPTSVRLTRLGIIST-PPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT-------- 219 (281) Q Consensus 155 ~-----~~~i~a~~i~-~~~pi~~~t~~gl~~v-~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~-------- 219 (281) . .+..+...+. ....+.+.|.-|-+-- =-+=.|+||..|-+-.+.......=+.+=.=++|+-++ T Consensus 171 ~~~giP~~~~i~~~~~~v~~~ll~~T~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~~y~lsG~~a~lAGil~~~r~~s~~p 250 (325) T PRK09699 171 SVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP 250 (325) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 21355299999999999999998218141034465789999988488713404433898789999999999998578481 Q ss_pred -HHHHHHHHHHH-HHHCC----CC--------HHHHHH----HHHHHHCHH---HHHHHHHHHHHHHHHHHHHHHH Q ss_conf -99999999999-99705----88--------049999----999740789---8999999999999999999998 Q gi|254780341|r 220 -IMLSLSMVVVT-ALVGS----NG--------LGVPVL----RALNTVDIG---RGFESGLCIVILAIILDRLFSI 274 (281) Q Consensus 220 -~~~~l~~vvia-~~ig~----~G--------LG~~i~----~a~~~~~~~---~~~~~~l~Iv~lai~lDri~~~ 274 (281) ......+-.++ ..+|+ +| +|..+. ++++..+.+ +...-+ .+.++++.+|++.++ T Consensus 251 ~~G~~~~l~aIaAvVlGGtsl~GG~Gsv~Gt~lGal~l~~i~ngl~~~gv~~~~q~~v~G-~iii~aV~ld~l~~r 325 (325) T PRK09699 251 LAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMG-GLIIAAVALDRLISK 325 (325) T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHC T ss_conf 427433788999999736067799715399999999999999999981998889999999-999999999999629 No 104 >COG3763 Uncharacterized protein conserved in bacteria [Function unknown] Probab=24.65 E-value=42 Score=13.10 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=13.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999999997887666776421012 Q gi|254780341|r 97 LSLVLVSTFISMFIGVPLGVLAAW 120 (281) Q Consensus 97 l~~~~~~~~ia~~igiplGi~~~~ 120 (281) +.+.+....+|++.|+..|.+.++ T Consensus 3 l~lail~ivl~ll~G~~~G~fiar 26 (71) T COG3763 3 LWLAILLIVLALLAGLIGGFFIAR 26 (71) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 289999999999999999999999 No 105 >TIGR01666 YCCS hypothetical membrane protein, TIGR01666; InterPro: IPR010019 This entry identifies a clade of sequences from gamma and beta proteobacteria. These proteins are more than 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from Escherichia coli has been annotated as yccS.. Probab=24.46 E-value=42 Score=13.08 Aligned_cols=46 Identities=30% Similarity=0.599 Sum_probs=23.4 Q ss_pred CHHHHHHHHHHHHCCC----CCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3028888775422134----8449-------------99999999999997887666776421 Q gi|254780341|r 72 TIAVGTAMGLLLIIKQ----GYWQ-------------ETTETLSLVLVSTFISMFIGVPLGVL 117 (281) Q Consensus 72 ~~~~~~~~~~~~i~~~----g~W~-------------~~~~Tl~~~~~~~~ia~~igiplGi~ 117 (281) |+++...+|...+... |||- .+=.-|..=.+|+++|+++|+|+=.+ T Consensus 392 RlSivl~lgyAIi~~fg~~~GYWILLTtlFVCQPNY~ATk~rL~~RIIGTl~G~~iG~pll~f 454 (713) T TIGR01666 392 RLSIVLTLGYAIIQIFGIERGYWILLTTLFVCQPNYSATKVRLKLRIIGTLVGVVIGVPLLYF 454 (713) T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999876400111677663343227970788998756799999999998778741 No 106 >TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation. Probab=22.77 E-value=41 Score=13.17 Aligned_cols=20 Identities=35% Similarity=0.265 Sum_probs=13.4 Q ss_pred HHHHHHHCCCCHHHHHHHHH Q ss_conf 99999960788201012236 Q gi|254780341|r 185 LKEAACAFGATPFQVFRKVE 204 (281) Q Consensus 185 ~~eaa~~~Gas~~q~l~~V~ 204 (281) .-+|||.+|+|++|+=.+++ T Consensus 546 QAKAARlLg~TPRQVgYalr 565 (574) T TIGR01817 546 QAKAARLLGLTPRQVGYALR 565 (574) T ss_pred HHHHHHHHCCCHHHHHHHHH T ss_conf 99999973786558999998 No 107 >pfam06295 DUF1043 Protein of unknown function (DUF1043). This family consists of several hypothetical bacterial proteins of unknown function. Probab=22.69 E-value=40 Score=13.24 Aligned_cols=15 Identities=20% Similarity=0.623 Sum_probs=6.1 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 887666776421012 Q gi|254780341|r 106 ISMFIGVPLGVLAAW 120 (281) Q Consensus 106 ia~~igiplGi~~~~ 120 (281) +++++|+.+|++.+| T Consensus 4 i~lvvG~iiG~~~~R 18 (128) T pfam06295 4 IGLIVGLIIGLIIMR 18 (128) T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 No 108 >pfam05957 DUF883 Bacterial protein of unknown function (DUF883). This family consists of several hypothetical bacterial proteins of unknown function. Probab=21.18 E-value=49 Score=12.69 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=9.3 Q ss_pred HHHHHHHHHHHHHHHCCC Q ss_conf 997887666776421012 Q gi|254780341|r 103 STFISMFIGVPLGVLAAW 120 (281) Q Consensus 103 ~~~ia~~igiplGi~~~~ 120 (281) ++.++..+|+.+|++++| T Consensus 76 svgiAagvG~llG~Ll~R 93 (94) T pfam05957 76 AVGIAAGVGLLLGLLLAR 93 (94) T ss_pred HHHHHHHHHHHHHHHHHC T ss_conf 999999999999999825 No 109 >COG4575 ElaB Uncharacterized conserved protein [Function unknown] Probab=20.90 E-value=50 Score=12.65 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHHHHCCC Q ss_conf 97887666776421012 Q gi|254780341|r 104 TFISMFIGVPLGVLAAW 120 (281) Q Consensus 104 ~~ia~~igiplGi~~~~ 120 (281) +.++..+|+.+|.+++| T Consensus 87 VGvaAaVGlllGlLlsR 103 (104) T COG4575 87 VGVAAAVGLLLGLLLSR 103 (104) T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 89999999999999805 No 110 >PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional Probab=20.52 E-value=49 Score=12.70 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=5.9 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 887666776421012 Q gi|254780341|r 106 ISMFIGVPLGVLAAW 120 (281) Q Consensus 106 ia~~igiplGi~~~~ 120 (281) +++++|+.+|++.+| T Consensus 8 i~lvvGiiIG~~~~R 22 (134) T PRK11677 8 IGLVVGIIIGAVAMR 22 (134) T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 Done!