HHsearch alignment for GI: 254780341 and conserved domain: pfam00528
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.94 E-value=4.6e-26 Score=175.36 Aligned_cols=170 Identities=32% Similarity=0.508 Sum_probs=150.9
Q ss_pred HHHHHHHCC--CCHHHHHCCCHHHHHHHHCCCCCHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 677642101--2112320235034544201202101100000-----021017889999998878999995887412998
Q gi|254780341|r 111 GVPLGVLAA--WYPRFYSIIRLFLDSMQTIPTFVYLIPALVL-----FGLGMVPGIVATIVFSIPTSVRLTRLGIISTPP 183 (281)
Q Consensus 111 giplGi~~~--~~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~-----fG~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~ 183 (281)
T Consensus 1 Gv~lG~~~a~~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 80 (183)
T pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80 (183)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 98699999950785899999999999998349999999999984236678999999999999999999999999970689
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 99999996078820101223688626799999999999999999999997058-80499999997407898999999999
Q gi|254780341|r 184 ILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPVLRALNTVDIGRGFESGLCIV 262 (281)
Q Consensus 184 ~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~-GLG~~i~~a~~~~~~~~~~~~~l~Iv 262 (281)
T Consensus 81 ~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~~GlG~~~~~a~~~~d~~~~~~~~~~~~ 160 (183)
T pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAA 160 (183)
T ss_pred HHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998699843412992189899999999999999999999999999368967599999999770999999999999
Q ss_pred HHH----HHHHHHHHHHHHHCC
Q ss_conf 999----999999998742105
Q gi|254780341|r 263 ILA----IILDRLFSIPDPRDR 280 (281)
Q Consensus 263 ~la----i~lDri~~~~~~r~~ 280 (281)
T Consensus 161 ~~~~~~~~~~d~l~~~ldpr~r 182 (183)
T pfam00528 161 LILLLLNLLVDILQRLLDPRVR 182 (183)
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999987391017