HHSEARCH alignment of GI: 254780341 and SCOP domain: d2onkc1

Alignment
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.86  E-value=1.8e-20  Score=139.02  Aligned_cols=185  Identities=22%  Similarity=0.312  Sum_probs=147.8

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCC----------
Q ss_conf             213484499999999999999788766677642101211-232023503454420120210110000002----------
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG----------  152 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG----------  152 (281)
                      ..+..+|+...+|+..+..++.++.++|+++|..+.+++ +.++..+.+......+|..+.......+++          
T Consensus        42 ~~~~~~~~~~~nSl~~~~~~~~i~~i~g~~la~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~~~~~~~~  121 (252)
T d2onkc1          42 ASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSP  121 (252)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTTTTTCS
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             83978999999999999999999999999999999873132168999998752168717777777641233210001245


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ----1017889999998878999995887412998999999960788201012236886267999999999999999999
Q gi|254780341|r  153 ----LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVV  228 (281)
Q Consensus       153 ----~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vv  228 (281)
                          .+....+++......|...+....+++++|+|+.|+||++|+|+||+++||.+|.++|.+.++...+...++....
T Consensus       122 ~~~~~~~~~iii~~~~~~~p~~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~  201 (252)
T d2onkc1         122 LKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFG  201 (252)
T ss_dssp             SCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred             CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             44200133211010011211036899999975038888788766998332546987087688999999999988999988


Q ss_pred             HHHHHCCC--CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf             99997058--80499999997407898999999999999999
Q gi|254780341|r  229 VTALVGSN--GLGVPVLRALNTVDIGRGFESGLCIVILAIIL  268 (281)
Q Consensus       229 ia~~ig~~--GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~l  268 (281)
                      ...++|.+  .+...+.+..++.+.+...+......++..++
T Consensus       202 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~il~~~~~~~  243 (252)
T d2onkc1         202 AVVVIAYYPMIAPTLIYERYLSEGLSAAMPVAAILILLSLAV  243 (252)
T ss_dssp             HHHTTCCSSCCHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             875114898519999999998058999999999999999999


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: Molybdate/tungstate transport system permease protein WtpB (ModB)
species: Archaeoglobus fulgidus [TaxId: 2234]