HHSEARCH alignment of GI: 254780341 and SCOP domain: d2r6gf2

Alignment
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=99.74  E-value=2.2e-16  Score=114.37  Aligned_cols=169  Identities=22%  Similarity=0.300  Sum_probs=124.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC--------------
Q ss_conf             449999999999999978876667764210121-12320235034544201202101100000021--------------
Q gi|254780341|r   89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL--------------  153 (281)
Q Consensus        89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~--------------  153 (281)
                      +|....+|+..+..++.++..+|.+++..+.++ .+.++.++..+.....+|+.+........++.              
T Consensus        17 ~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~g~~~~~l~~~~~   96 (244)
T d2r6gf2          17 FLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFG   96 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf             99999999999999999999999999999984742047899999999998408899999999875235514666655302


Q ss_pred             -----------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----------017889999998878999995887412998999999960788201012236886267999999999999
Q gi|254780341|r  154 -----------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIML  222 (281)
Q Consensus       154 -----------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~  222 (281)
                                 +....+++.+....|..+.....+++++|+|+.|||+..|+|+||++|||.+|..+|.+..+.-.+.+.
T Consensus        97 ~~~~~~~~~~~~~~~i~i~~v~~~~p~~~l~~~~~l~~I~~~l~EAA~idGAs~~~~f~~I~lPl~~p~i~~~~il~fi~  176 (244)
T d2r6gf2          97 VKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAF  176 (244)
T ss_dssp             CCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             67741012779999999999997102779999999975999998999974997657749998544689999999999999


Q ss_pred             HHHHHHHHHHHCCCC---------------HHHHHHHHHH----HHCHHHHHHH
Q ss_conf             999999999970588---------------0499999997----4078989999
Q gi|254780341|r  223 SLSMVVVTALVGSNG---------------LGVPVLRALN----TVDIGRGFES  257 (281)
Q Consensus       223 ~l~~vvia~~ig~~G---------------LG~~i~~a~~----~~~~~~~~~~  257 (281)
                      ++......-+++++|               ++.++++...    +.|++.+-+.
T Consensus       177 ~~~~f~~~~~l~~ggp~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~g~aaA~  230 (244)
T d2r6gf2         177 NFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAI  230 (244)
T ss_dssp             HHTCHHHHHHHCSSCSBCSSCSSCCBSSCCHHHHHHHHHTSSSSCCCHHHHHHH
T ss_pred             HCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             720056764425888875556663049999999999999862532529999999


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: Maltose transport system permease protein MalF
species: Escherichia coli [TaxId: 562]