HHSEARCH alignment of GI: 254780341 and SCOP domain: d3d31c1

Alignment
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=99.85  E-value=6e-20  Score=135.82  Aligned_cols=183  Identities=17%  Similarity=0.236  Sum_probs=145.2

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCC----------
Q ss_conf             213484499999999999999788766677642101211-232023503454420120210110000002----------
Q gi|254780341|r   84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG----------  152 (281)
Q Consensus        84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG----------  152 (281)
                      ..+.++|+...+|+.....++.++.++|.++++.+.+++ +.++.++........+|..+...+...+|+          
T Consensus        40 ~~~~~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~~~~~~~~~~~l~~~p~~ip~vv~~~~~~~~~~~~~~~~~~~~  119 (248)
T d3d31c1          40 AGNRSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLE  119 (248)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGGT
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCC
T ss_conf             85989999999999999999999999999999999864651256899999999999972000244520343211111222


Q ss_pred             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------10178899999988789999958874129989999999607882010122368862679999999999999999
Q gi|254780341|r  153 ------LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSM  226 (281)
Q Consensus       153 ------~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~  226 (281)
                            .+....+++.....+|...+.+..+++++|+|+.|+|+++|+|+||+++||.+|.++|+++++.-.+.+.++..
T Consensus       120 ~~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~I~lP~~~p~i~~~~~l~f~~~~~~  199 (248)
T d3d31c1         120 SYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISE  199 (248)
T ss_dssp             TTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             21124564200100110110036888889999710336899987631042347789889999999999999999999999


Q ss_pred             HHHHHHHCCC--CHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf             9999997058--804999999974078989999999999999
Q gi|254780341|r  227 VVVTALVGSN--GLGVPVLRALNTVDIGRGFESGLCIVILAI  266 (281)
Q Consensus       227 vvia~~ig~~--GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai  266 (281)
                      .....++|.+  -+-..+++..++.|.+...+..+...++.+
T Consensus       200 ~~~~~~l~~~~~~~~~~i~~~~~~~~~~~a~a~a~il~~~~l  241 (248)
T d3d31c1         200 FGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTL  241 (248)
T ss_dssp             CHHHHHHHCTTCCHHHHHHHHHHHSTTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             998873318984099999999995589999999999999999


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: Sulfate/molybdate ABC transporter, permease protein
species: Methanosarcina acetivorans [TaxId: 2214]