Query gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 281
No_of_seqs 216 out of 3631
Neff 7.0
Searched_HMMs 13730
Date Wed Jun 1 02:52:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780341.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dhwa1 f.58.1.1 (A:6-208) D-m 99.9 2.1E-25 1.5E-29 168.7 13.3 180 90-273 5-199 (203)
2 d2onkc1 f.58.1.1 (C:1-252) Mol 99.9 1.8E-20 1.3E-24 139.0 18.0 185 84-268 42-243 (252)
3 d3d31c1 f.58.1.1 (C:13-260) Su 99.9 6E-20 4.4E-24 135.8 18.2 183 84-266 40-241 (248)
4 d2r6gf2 f.58.1.1 (F:261-504) M 99.7 2.2E-16 1.6E-20 114.4 17.7 169 89-257 17-230 (244)
5 d2r6gg1 f.58.1.1 (G:7-296) Mal 99.7 1.1E-17 7.9E-22 122.3 10.9 173 87-259 73-262 (290)
6 d1umqa_ a.4.1.12 (A:) Photosyn 27.6 13 0.00095 13.4 2.1 32 173-204 24-55 (60)
7 d1ciia1 f.1.1.1 (A:451-624) Co 25.3 14 0.001 13.2 2.6 31 87-117 111-149 (174)
8 d1ntca_ a.4.1.12 (A:) DNA-bind 21.4 17 0.0012 12.8 1.3 31 174-204 56-86 (91)
9 d1i3ja_ d.285.1.1 (A:) DNA-bin 17.3 20 0.0014 12.3 0.9 22 183-204 65-86 (96)
10 d1etxa_ a.4.1.12 (A:) FIS prot 13.4 27 0.002 11.5 2.3 31 174-204 54-84 (89)
No 1
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=99.93 E-value=2.1e-25 Score=168.67 Aligned_cols=180 Identities=29% Similarity=0.408 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CHHHHHCCCHHHHHHHHCCCCCHHHHHH------HHCCCCH
Q ss_conf 4999999999999997887666776421012--------1123202350345442012021011000------0002101
Q gi|254780341|r 90 WQETTETLSLVLVSTFISMFIGVPLGVLAAW--------YPRFYSIIRLFLDSMQTIPTFVYLIPAL------VLFGLGM 155 (281)
Q Consensus 90 W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--------~~~~~~~~~p~l~~~~~iP~~v~l~p~i------~~fG~g~ 155 (281)
++...+|+.+...++.++.++|+|+|+++++ +++..+...++...++++|..+++.... ..++.|.
T Consensus 5 l~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~~~~~~~ 84 (203)
T d3dhwa1 5 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGL 84 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTCCSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999999999999999999999999998744432008999999999999999999999999998635540454119
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 78899999988789999958874129989999999607882010122368862679999999999999999999999705
Q gi|254780341|r 156 VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS 235 (281)
Q Consensus 156 ~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~ 235 (281)
.+.+++..+++.|++.+++.+|++++|+|++|+||++|+|+||+++||.+|++.|.+++|.+.+...++....+++++|+
T Consensus 85 ~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig~ 164 (203)
T d3dhwa1 85 QAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGA 164 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999986489999999888843620689998869944424188409976999999999999999999999999977
Q ss_pred CCHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8804999999-9740789899999999999999999999
Q gi|254780341|r 236 NGLGVPVLRA-LNTVDIGRGFESGLCIVILAIILDRLFS 273 (281)
Q Consensus 236 ~GLG~~i~~a-~~~~~~~~~~~~~l~Iv~lai~lDri~~ 273 (281)
+|+|+...+. .+++|...+.... .+.+++..+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~li~ 199 (203)
T d3dhwa1 165 GGLGQIGYQYGYIGYNATVMNTVL----VLLVILVYLIQ 199 (203)
T ss_dssp CHHHHHHHHHHHSSCCTTHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHH----HHHHHHHHHHH
T ss_conf 599999999998740289999999----99999999999
No 2
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.86 E-value=1.8e-20 Score=139.02 Aligned_cols=185 Identities=22% Similarity=0.312 Sum_probs=147.8
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCC----------
Q ss_conf 213484499999999999999788766677642101211-232023503454420120210110000002----------
Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG---------- 152 (281)
Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG---------- 152 (281)
..+..+|+...+|+..+..++.++.++|+++|..+.+++ +.++..+.+......+|..+.......+++
T Consensus 42 ~~~~~~~~~~~nSl~~~~~~~~i~~i~g~~la~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~~~~~~~~ 121 (252)
T d2onkc1 42 ASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSP 121 (252)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTTTTTCS
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 83978999999999999999999999999999999873132168999998752168717777777641233210001245
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----1017889999998878999995887412998999999960788201012236886267999999999999999999
Q gi|254780341|r 153 ----LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVV 228 (281)
Q Consensus 153 ----~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vv 228 (281)
.+....+++......|...+....+++++|+|+.|+||++|+|+||+++||.+|.++|.+.++...+...++....
T Consensus 122 ~~~~~~~~~iii~~~~~~~p~~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~ 201 (252)
T d2onkc1 122 LKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFG 201 (252)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44200133211010011211036899999975038888788766998332546987087688999999999988999988
Q ss_pred HHHHHCCC--CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 99997058--80499999997407898999999999999999
Q gi|254780341|r 229 VTALVGSN--GLGVPVLRALNTVDIGRGFESGLCIVILAIIL 268 (281)
Q Consensus 229 ia~~ig~~--GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~l 268 (281)
...++|.+ .+...+.+..++.+.+...+......++..++
T Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~il~~~~~~~ 243 (252)
T d2onkc1 202 AVVVIAYYPMIAPTLIYERYLSEGLSAAMPVAAILILLSLAV 243 (252)
T ss_dssp HHHTTCCSSCCHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 875114898519999999998058999999999999999999
No 3
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=99.85 E-value=6e-20 Score=135.82 Aligned_cols=183 Identities=17% Similarity=0.236 Sum_probs=145.2
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCC----------
Q ss_conf 213484499999999999999788766677642101211-232023503454420120210110000002----------
Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG---------- 152 (281)
Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG---------- 152 (281)
..+.++|+...+|+.....++.++.++|.++++.+.+++ +.++.++........+|..+...+...+|+
T Consensus 40 ~~~~~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~~~~~~~~~~~l~~~p~~ip~vv~~~~~~~~~~~~~~~~~~~~ 119 (248)
T d3d31c1 40 AGNRSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLE 119 (248)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGGT
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCC
T ss_conf 85989999999999999999999999999999999864651256899999999999972000244520343211111222
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------10178899999988789999958874129989999999607882010122368862679999999999999999
Q gi|254780341|r 153 ------LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSM 226 (281)
Q Consensus 153 ------~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~ 226 (281)
.+....+++.....+|...+.+..+++++|+|+.|+|+++|+|+||+++||.+|.++|+++++.-.+.+.++..
T Consensus 120 ~~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~I~lP~~~p~i~~~~~l~f~~~~~~ 199 (248)
T d3d31c1 120 SYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISE 199 (248)
T ss_dssp TTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21124564200100110110036888889999710336899987631042347789889999999999999999999999
Q ss_pred HHHHHHHCCC--CHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 9999997058--804999999974078989999999999999
Q gi|254780341|r 227 VVVTALVGSN--GLGVPVLRALNTVDIGRGFESGLCIVILAI 266 (281)
Q Consensus 227 vvia~~ig~~--GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai 266 (281)
.....++|.+ -+-..+++..++.|.+...+..+...++.+
T Consensus 200 ~~~~~~l~~~~~~~~~~i~~~~~~~~~~~a~a~a~il~~~~l 241 (248)
T d3d31c1 200 FGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTL 241 (248)
T ss_dssp CHHHHHHHCTTCCHHHHHHHHHHHSTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 998873318984099999999995589999999999999999
No 4
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=99.74 E-value=2.2e-16 Score=114.37 Aligned_cols=169 Identities=22% Similarity=0.300 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCC--------------
Q ss_conf 449999999999999978876667764210121-12320235034544201202101100000021--------------
Q gi|254780341|r 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL-------------- 153 (281)
Q Consensus 89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~-------------- 153 (281)
+|....+|+..+..++.++..+|.+++..+.++ .+.++.++..+.....+|+.+........++.
T Consensus 17 ~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~g~~~~~l~~~~~ 96 (244)
T d2r6gf2 17 FLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFG 96 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 99999999999999999999999999999984742047899999999998408899999999875235514666655302
Q ss_pred -----------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----------017889999998878999995887412998999999960788201012236886267999999999999
Q gi|254780341|r 154 -----------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIML 222 (281)
Q Consensus 154 -----------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~ 222 (281)
+....+++.+....|..+.....+++++|+|+.|||+..|+|+||++|||.+|..+|.+..+.-.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~i~i~~v~~~~p~~~l~~~~~l~~I~~~l~EAA~idGAs~~~~f~~I~lPl~~p~i~~~~il~fi~ 176 (244)
T d2r6gf2 97 VKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAF 176 (244)
T ss_dssp CCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 67741012779999999999997102779999999975999998999974997657749998544689999999999999
Q ss_pred HHHHHHHHHHHCCCC---------------HHHHHHHHHH----HHCHHHHHHH
Q ss_conf 999999999970588---------------0499999997----4078989999
Q gi|254780341|r 223 SLSMVVVTALVGSNG---------------LGVPVLRALN----TVDIGRGFES 257 (281)
Q Consensus 223 ~l~~vvia~~ig~~G---------------LG~~i~~a~~----~~~~~~~~~~ 257 (281)
++......-+++++| ++.++++... +.|++.+-+.
T Consensus 177 ~~~~f~~~~~l~~ggp~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~g~aaA~ 230 (244)
T d2r6gf2 177 NFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAI 230 (244)
T ss_dssp HHTCHHHHHHHCSSCSBCSSCSSCCBSSCCHHHHHHHHHTSSSSCCCHHHHHHH
T ss_pred HCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 720056764425888875556663049999999999999862532529999999
No 5
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=99.73 E-value=1.1e-17 Score=122.25 Aligned_cols=173 Identities=18% Similarity=0.157 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCC----------CCH
Q ss_conf 484499999999999999788766677642101211-232023503454420120210110000002----------101
Q gi|254780341|r 87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG----------LGM 155 (281)
Q Consensus 87 ~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG----------~g~ 155 (281)
.++|....+|+.....++.++..+|++.+..+.|++ +.++..+........+|..+...+....|+ .+.
T Consensus 73 ~~~~~~~~nSl~~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~~~~~~~~~~~~P~~v~~i~~~~~~~~~g~~~~~~~~~~ 152 (290)
T d2r6gg1 73 FPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNT 152 (290)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSHHHHHHHHHTTSSCSSSHHHHHHHHHHHHHHHSTTSSTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEHHHCCCCCCCCCCCCCCCC
T ss_conf 17999987667766545556656777788888874413578999876413112312301002201133477566213574
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 78899999988789999958874129989999999607882010122368862679999999999999999999999705
Q gi|254780341|r 156 VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS 235 (281)
Q Consensus 156 ~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~ 235 (281)
...++.......|..++....+++++|+|+.|||+..|||+||+++||.+|..+|+++++.-.+.+.++.......+.++
T Consensus 153 ~~~ii~~~~~~~pf~~~~~~~~l~~i~~~l~EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~~~f~~~~~~~~ 232 (290)
T d2r6gg1 153 HGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLR 232 (290)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCC
T ss_conf 13442223550364200132054111166665686539977888899888863125666787876644110114411137
Q ss_pred CC----HHHHHHHH--HHHHCHHHHHHHHH
Q ss_conf 88----04999999--97407898999999
Q gi|254780341|r 236 NG----LGVPVLRA--LNTVDIGRGFESGL 259 (281)
Q Consensus 236 ~G----LG~~i~~a--~~~~~~~~~~~~~l 259 (281)
++ +...++.. .+..|.+...++.+
T Consensus 233 ~~~~~t~~~~i~~~~~~~~~~~~~~~A~~~ 262 (290)
T d2r6gg1 233 DVNSYTLAVGMQQYLNPQNYLWGDFAAAAV 262 (290)
T ss_dssp SGGGCCHHHHGGGGBCSSCBCHHHHHHHHH
T ss_pred CCCCEEHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 987166999999998440530999999999
No 6
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=27.60 E-value=13 Score=13.43 Aligned_cols=32 Identities=9% Similarity=-0.110 Sum_probs=26.4
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 95887412998999999960788201012236
Q gi|254780341|r 173 LTRLGIISTPPILKEAACAFGATPFQVFRKVE 204 (281)
Q Consensus 173 ~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~ 204 (281)
.....++.-+-+.-++|+.+|.|+....+|+.
T Consensus 24 ~I~~aL~~~~gn~~~aA~~LGIsR~TL~rkmk 55 (60)
T d1umqa_ 24 HIQRIYEMCDRNVSETARRLNMHRRTLQRILA 55 (60)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999668599999998988999999999
No 7
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=25.26 E-value=14 Score=13.17 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q ss_conf 484499999999--------9999997887666776421
Q gi|254780341|r 87 QGYWQETTETLS--------LVLVSTFISMFIGVPLGVL 117 (281)
Q Consensus 87 ~g~W~~~~~Tl~--------~~~~~~~ia~~igiplGi~ 117 (281)
.|-|.+.+.++. ..+++..++...|.|+|++
T Consensus 111 TGNW~Pl~l~~Es~~~g~~asav~a~~fs~~~g~~lgi~ 149 (174)
T d1ciia1 111 TENWRPLFVKTETIIAGNAATALVALVFSILTGSALGII 149 (174)
T ss_dssp STTCHHHHHHHTTTBTTCBHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 788278999999999988899999999999970279999
No 8
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=21.35 E-value=17 Score=12.76 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=26.0
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 5887412998999999960788201012236
Q gi|254780341|r 174 TRLGIISTPPILKEAACAFGATPFQVFRKVE 204 (281)
Q Consensus 174 t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~ 204 (281)
....++..+-+..++|+.+|.+|-...+|+.
T Consensus 56 I~~aL~~~~Gn~~~AA~~LGI~R~TL~~Klk 86 (91)
T d1ntca_ 56 LTTALRHTQGHKQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHTTTCTTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999599599999997988999999999
No 9
>d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]}
Probab=17.25 E-value=20 Score=12.34 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=18.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 8999999960788201012236
Q gi|254780341|r 183 PILKEAACAFGATPFQVFRKVE 204 (281)
Q Consensus 183 ~~~~eaa~~~Gas~~q~l~~V~ 204 (281)
.++.|||+.+|.+.-.+.+++.
T Consensus 65 ~S~~EAar~lgi~~~tI~~R~k 86 (96)
T d1i3ja_ 65 DCAADAARHFKISSGLVTYRVK 86 (96)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
T ss_conf 0699999994898378999975
No 10
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=13.36 E-value=27 Score=11.53 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=24.3
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 5887412998999999960788201012236
Q gi|254780341|r 174 TRLGIISTPPILKEAACAFGATPFQVFRKVE 204 (281)
Q Consensus 174 t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~ 204 (281)
...+++...-+..++|+.+|.||-...+|+.
T Consensus 54 i~~aL~~~~gn~~~aA~~LGisR~tL~~klk 84 (89)
T d1etxa_ 54 LDMVMQYTRGNATRAALMMGINRGTLRKKLK 84 (89)
T ss_dssp HHHHHHHTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999299699999998978999999999
Done!