RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC
transporter, permease protein [Candidatus Liberibacter asiaticus str.
psy62]
(281 letters)
>gnl|CDD|132457 TIGR03416, ABC_choXWV_perm, choline ABC transporter, permease
protein.
Length = 267
Score = 327 bits (841), Expect = 2e-90
Identities = 156/264 (59%), Positives = 205/264 (77%)
Query: 9 IPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVK 68
IP+G + + F LT NG +F + L+F+L ++ +L +LQ PPL+ + + + L ++
Sbjct: 4 IPIGAWAKSFVDWLTDNGAFFFDALAFVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQ 63
Query: 69 RSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSII 128
RS ++A+ A+GLLLII QGYW+ET ETL+LVL +T + M IGVPLG+ AA P Y+I+
Sbjct: 64 RSWSLALFVALGLLLIINQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHRPWLYAIM 123
Query: 129 RLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEA 188
R LD MQT+PTFVYLIPALVLFGLGMVPG+++T++F+IP +RLT LGI S P L EA
Sbjct: 124 RPVLDLMQTLPTFVYLIPALVLFGLGMVPGLISTVIFAIPAPIRLTHLGISSVPQELVEA 183
Query: 189 ACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNT 248
AFGATP Q+ KVELP+A+PQI+A LTQTIMLSLSMVV+ ALVG++GLGVPV+RALNT
Sbjct: 184 GEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRALNT 243
Query: 249 VDIGRGFESGLCIVILAIILDRLF 272
V+I GFE+GL IV+LAI+LDR+F
Sbjct: 244 VNIALGFEAGLAIVVLAIVLDRIF 267
>gnl|CDD|182861 PRK10952, PRK10952, glycine betaine transporter membrane protein;
Provisional.
Length = 355
Score = 189 bits (482), Expect = 6e-49
Identities = 103/224 (45%), Positives = 145/224 (64%), Gaps = 1/224 (0%)
Query: 48 LQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFIS 107
L +P V + V +L+ + + + V T + L+ I G W + TL+LVL +
Sbjct: 102 LLGMPAPVAIIVFALIAWQIS-GVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFC 160
Query: 108 MFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSI 167
+ IG+PLG+ A PR IIR LD+MQT P FVYL+P ++LFG+G VPG+V TI+F++
Sbjct: 161 IVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFAL 220
Query: 168 PTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMV 227
P VRLT LGI P L EA+ +FGA+P Q+ KV+LP A+P I+A + QT+ML+LSMV
Sbjct: 221 PPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMV 280
Query: 228 VVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILAIILDRL 271
V+ +++ GLG VLR + +D+G G+ IVILAIILDRL
Sbjct: 281 VIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRL 324
>gnl|CDD|162201 TIGR01097, PhnE, phosphonate ABC transporter, permease protein
PhnE. Phosphonates are a class of compound analogous to
organic phosphates, but in which the C-O-P linkage is
replaced by a direct, stable C-P bond. Some bacteria can
utilize phosphonates as a source of phosphorus. This
family consists of permease proteins of known or
predicted phosphonate ABC transporters. Often this
protein is found as a duplicated pair, occasionally as a
fused pair. Certain "second" copies score in between the
trusted and noise cutoff and should be considered true
hits (by context).
Length = 250
Score = 73.3 bits (181), Expect = 6e-14
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 4/187 (2%)
Query: 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAA----WYPRFYSIIRLFLDSMQTIPTFVYL 144
+ ETL++ ++ T ++ + +PL +LAA P + RL L+ ++ IP V+
Sbjct: 56 ILKALLETLAMAILGTVLAAILALPLALLAARNITPSPWLSGLARLLLNFLRAIPELVWA 115
Query: 145 IPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVE 204
+ + GLG G++A ++ +L I P EA A GA+ QV R
Sbjct: 116 LIFVAAVGLGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGV 175
Query: 205 LPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVIL 264
LP +PQ ++ +++ V LVG+ G+G+ + +A+ D L I+++
Sbjct: 176 LPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGIGLELDQAIGLFDYDEVSAIILVILVV 235
Query: 265 AIILDRL 271
+I+D +
Sbjct: 236 VVIIDLI 242
>gnl|CDD|182726 PRK10782, PRK10782, DL-methionine transporter permease subunit;
Provisional.
Length = 217
Score = 65.1 bits (159), Expect = 2e-11
Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 18/174 (10%)
Query: 80 GLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVL--------AAWYPRFYSIIRLF 131
++ ++ +G W ETL++ VS F IG+P+GVL + Y +
Sbjct: 4 AMMWLLVRGVW----ETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSAL 59
Query: 132 LDSMQTIP---TFVYLIP---ALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPIL 185
++ ++IP V++IP +V +G+ IV V + P R+ ++ P L
Sbjct: 60 VNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGL 119
Query: 186 KEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG 239
EA+ A GATP Q+ RKV LP A+P +V + T T++ + + VG+ GLG
Sbjct: 120 IEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLG 173
>gnl|CDD|162141 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein
PstA. This model describes PtsA, one of a pair of
permease proteins in the ABC (high affinity) phosphate
transporter. In a number of species, this permease is
fused with the PtsC protein (TIGR02138). In the model
bacterium Escherichia coli, this transport system is
induced when the concentration of extrallular inorganic
phosphate is low. A constitutive, lower affinity
transporter operates otherwise.
Length = 271
Score = 58.0 bits (141), Expect = 3e-09
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 101 LVSTFISMFIGVPLGVLAAWY-------PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL 153
L+ +++ I VPLG+ AA Y RF +IR +D + +P+ V + F L
Sbjct: 60 LLLILLAIVIAVPLGIGAAIYLAEYANESRFTKVIRFAVDILAGVPSIVVGLFGYGFFVL 119
Query: 154 GMVP-------GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELP 206
M+ G +A + +P +R T + + P L+EA+ A GAT +Q KV LP
Sbjct: 120 TMLGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLREASYALGATKWQTIFKVVLP 179
Query: 207 FAIPQIVASLTQTIMLSLSMV 227
A+P I+ I+LS++
Sbjct: 180 AALPGILTG----IILSIARA 196
>gnl|CDD|162724 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease
protein PstC. The typical operon for the high affinity
inorganic phosphate ABC transporter encodes an
ATP-binding protein, a phosphate-binding protein, and
two permease proteins. This family consists of one of
the two permease proteins, PstC, which is homologous to
PstA (TIGR00974). In the model bacterium Escherichia
coli, this transport system is induced when the
concentration of extrallular inorganic phosphate is low.
A constitutive, lower affinity transporter operates
otherwise.
Length = 295
Score = 57.3 bits (139), Expect = 5e-09
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 28/171 (16%)
Query: 101 LVSTFISMFIGVPLGVLAAWY------PRFYSIIRLFLDSMQTIPTFVY-------LIPA 147
L+++ I++ I VP+G+ A + R S+++ ++ + IP+ VY L+P
Sbjct: 69 LITSLIALLIAVPVGIGIAIFLSEIAPKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVPF 128
Query: 148 LV---------------LFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAF 192
L LFG ++ + + +PT ++R + + P KEA+ A
Sbjct: 129 LKPHFQPFLGSNLGLIPLFGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYAL 188
Query: 193 GATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVL 243
GAT ++ R+V LP A IV ++ + +L + +V N + L
Sbjct: 189 GATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGNVFPISPL 239
>gnl|CDD|182276 PRK10160, PRK10160, taurine transporter subunit; Provisional.
Length = 275
Score = 47.1 bits (112), Expect = 6e-06
Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 90 WQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALV 149
WQ +L+ ++++ ++ IG+P+G+ P I+ ++ + +P YL ++
Sbjct: 77 WQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVI 136
Query: 150 LFGLGMVPGIVATIVFSIPTSVRLTRL-GIISTPPILKEAACAFGATPFQVFRKVELPFA 208
FG+G I+ I +I V ++ L G+ S + AA + GA+ QV V LP A
Sbjct: 137 WFGIGETSKIL-LIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGA 195
Query: 209 IPQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPVLRA 245
+P+I+ L + + S +V L+ + GLG V A
Sbjct: 196 LPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSA 233
>gnl|CDD|162726 TIGR02141, modB_ABC, molybdate ABC transporter, permease protein.
Molybdate is chemically similar to sulfate, thiosulfate,
and selenate. These related substrates, and sometimes
molybdate itself, can be transported by the homologous
sulfate receptor. Some apparent molybdenum transport
operons include a permease related to this ModB,
although less similar than some sulfate permease
proteins and not included in this model.
Length = 208
Score = 46.5 bits (111), Expect = 8e-06
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIP-------TFVYLI--- 145
+L + +++T + + +G+P+ A W R + L+ + T+P YL+
Sbjct: 3 SLKVAVIATLLLLPLGIPV---AWWLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAF 59
Query: 146 -------PALVLFGLGMV---PGIV-ATIVFSIPTSVRLTRLGIISTPPILKEAACAFGA 194
L LFG+ +V G V A+++ S P V+ R + P L+EAA GA
Sbjct: 60 GPNGPIGKLLELFGISLVFTFAGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGA 119
Query: 195 TPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN 236
+ Q F KV LP A P ++A + +L T + N
Sbjct: 120 SEIQTFLKVTLPLAFPGLLAGCVLSFARALGEFGATLMFAGN 161
>gnl|CDD|130643 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter. Included in
this group is a gene designated NifC in Clostridium
pasturianum. It would be reasonable to presume that NifC
acts as a molybdate porter since the most common form of
nitrogenase is a molybdoenzyme. Several other sequences
falling within the scope of this model are annotated as
molybdate porters and one, from Halobacterium, is
annotated as a sulfate porter. There is presently no
experimental evidence to support annotations with this
degree of specificity.
Length = 225
Score = 45.9 bits (109), Expect = 1e-05
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 18/159 (11%)
Query: 101 LVSTFISMFIGVPLG-VLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPG- 158
L S +++ IG+P VLA ++ LD +P V + L+LFG + G
Sbjct: 31 LASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGP 90
Query: 159 ----------------IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRK 202
++A + P VR+ R S P ++ A + GA P + FRK
Sbjct: 91 YLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRK 150
Query: 203 VELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVP 241
+ LP A P ++A L +L T + + G
Sbjct: 151 ITLPMARPGLLAGLVLAWARALGEFGATLMFAGSIQGKT 189
>gnl|CDD|132270 TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporter, permease
protein. This ABC transporter permease
(membrane-spanning) component is found in a region of
the salmonella typhimurium LT2 genome responsible for
the catabolism of 2-aminoethylphosphonate via the phnWX
pathway (GenProp0238).
Length = 312
Score = 45.0 bits (106), Expect = 2e-05
Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 11/178 (6%)
Query: 61 SLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW 120
+L + + + +G+A+ +L E L+ F+ +FI P ++A
Sbjct: 97 TLQIAFAAAAGALLLGSALAAILFFIPFPGAE--------LIGRFLDLFIAFPSFLIAFA 148
Query: 121 YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIIS 180
+ Y L ++ F P LFG G V I+A I F P +R
Sbjct: 149 FIFIYGSAGLLNGALMRAFAF-DAPPLDFLFGAGGV--ILAEITFFTPFVMRPLLAAFAQ 205
Query: 181 TPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGL 238
L EAA GA + +V P A+P I A +L+L+ + +G+ GL
Sbjct: 206 IDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGILCFLLTLNEFGILLFIGAAGL 263
>gnl|CDD|185040 PRK15082, PRK15082, glutathione ABC transporter permease GsiD;
Provisional.
Length = 301
Score = 43.2 bits (102), Expect = 7e-05
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 101 LVSTFISMFIGVPLGVLAAWYPRFYS-IIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGI 159
S I IG LG+LA +Y ++ II D + P + I + + G GM I
Sbjct: 107 FFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVI 166
Query: 160 VATIVFSIPTSVRLTRLGIISTPPILK-----EAACAFGATPFQVFRKVELPFAIPQIVA 214
+A +FSIP RL R +LK E+A + GA+ + + + LP + IV
Sbjct: 167 IAVAIFSIPAFARLVR----GNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVV 222
Query: 215 SLTQTIMLSL 224
T I S+
Sbjct: 223 YFTMRIGTSI 232
>gnl|CDD|181841 PRK09421, modB, molybdate ABC transporter permease protein;
Reviewed.
Length = 229
Score = 41.8 bits (99), Expect = 2e-04
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 27/143 (18%)
Query: 97 LSLVLVSTFISMFIGVPLGVLAAW-YPRFYSIIRLFLDSMQTIPTFV------YLIPALV 149
+ L L + +++ +P G+L AW R + LDS+ +P + YL+ L+
Sbjct: 11 VLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLL--LI 68
Query: 150 LFG--------LGMVPGIV----------ATIVFSIPTSVRLTRLGIISTPPILKEAACA 191
G L GI A V + P VR RL + + L++AA
Sbjct: 69 SMGRRGFIGQWLYEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAART 128
Query: 192 FGATPFQVFRKVELPFAIPQIVA 214
GA+P++VF + LP +P I+A
Sbjct: 129 LGASPWRVFFTITLPLTLPGIIA 151
>gnl|CDD|182131 PRK09881, PRK09881, D-ala-D-ala transporter subunit; Provisional.
Length = 296
Score = 40.6 bits (95), Expect = 5e-04
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 7/153 (4%)
Query: 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPA 147
G Q L +V ++ I +G GVL R +II +D M +IP+ V +
Sbjct: 92 GSQQSILAGLVVVAIAGMIGSLLGCLSGVLGG---RADAIIMRIMDIMLSIPSLVLTMAL 148
Query: 148 LVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPP-ILKEAACAFGATPFQVFRKVELP 206
G + ++A + IP VRL R + +AA FGA+ + + L
Sbjct: 149 AAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILR 208
Query: 207 FAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG 239
++P ++ + I S +++ A +G GLG
Sbjct: 209 NSLPPLIVQASLDIG---SAILMAATLGFIGLG 238
>gnl|CDD|131837 TIGR02790, nickel_nikC, nickel ABC transporter, permease subunit
NikC. This family consists of the NikC family of nickel
ABC transporter permeases. Operons that contain this
protein also contain a homologous permease subunit NikB.
Nickel is used in cells as part of urease or certain
hydrogenases or superoxide dismutases.
Length = 258
Score = 38.5 bits (90), Expect = 0.002
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG 154
+L L+ + + IG+ +G LA + R I D + PT + + + + G G
Sbjct: 64 SLGSALLVLGLVLTIGLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPG 123
Query: 155 MVPGIVATIVFSIPTSVRLTRLGIISTPPILKE-----AACAFGATPFQVFRKVELPFAI 209
+ I+A ++ R+ R ++S LK+ AA GA+ +Q+ R+ LP +
Sbjct: 124 LENVIIAIVLVHWAWYARMVRGMVVS----LKQREFVLAARTSGASHWQIIRRHILPNIL 179
Query: 210 PQIV 213
I+
Sbjct: 180 SPII 183
>gnl|CDD|132299 TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport system,
membrane component PhnV. This membrane component of an
ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 272
Score = 38.1 bits (88), Expect = 0.003
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 8/145 (5%)
Query: 138 IPTFVYLIPALVLFGLGMV-----PGIVATIVFSI--PTSVRLTRLGIISTPPILKEAAC 190
IP+ + L+ F G + IV F++ R + ++EAA
Sbjct: 119 IPSVSLGLAILIAFHAGPLDLNGSLAIVLFAHFALILAFCFRCAAAALAPELADIEEAAA 178
Query: 191 AFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVD 250
+ GA P R V LP +P I+A+L LSL + T ++ G + D
Sbjct: 179 SLGAPPAMRLRHVLLPLLMPAIMAALALGFALSLGELGATLMIYPPGFATLPIAIFGATD 238
Query: 251 IGRGFE-SGLCIVILAIILDRLFSI 274
G + + L I++LA L L +I
Sbjct: 239 RGNIADAAALSILLLAASLLALIAI 263
>gnl|CDD|183065 PRK11268, pstA, phosphate transporter permease subunit PtsA;
Provisional.
Length = 295
Score = 37.0 bits (86), Expect = 0.006
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 98 SLVLVSTFISMFIGVPLGVLAAWYPRFY-------SIIRLFLDSMQTIPT-----FVYLI 145
S +L+ + +G PLG++A Y Y +IR D + + P+ FVY I
Sbjct: 86 SGLLI--LWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTI 143
Query: 146 PALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVEL 205
+ G++A + IP +R T + P L+EAA A G +++ + L
Sbjct: 144 VVAQMEHFSGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITL 203
Query: 206 PFAIPQIV 213
++ I+
Sbjct: 204 KASVSGIM 211
>gnl|CDD|181912 PRK09500, potC, spermidine/putrescine ABC transporter membrane
protein; Reviewed.
Length = 256
Score = 36.5 bits (85), Expect = 0.008
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 12/171 (7%)
Query: 91 QETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTI----PTFVYLIP 146
Q +L++ + S + IG L +A + RF + F+ M + P V I
Sbjct: 57 QAAQHSLTMAVFSATFATLIGS-LTAVALYRYRFRG--KKFVSGMLFVVMMSPDIVMAIS 113
Query: 147 ALVLF-----GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFR 201
LVLF LG + A I F +P V + + EAA GA+ F + R
Sbjct: 114 LLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILR 173
Query: 202 KVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIG 252
K+ LP A+P + A + LSL VVV++ V + L+ + V +G
Sbjct: 174 KIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVG 224
>gnl|CDD|162139 TIGR00969, 3a0106s02, sulfate ABC transporter, permease protein.
This model describes a subfamily of both CysT and CysW,
paralogous and generally tandemly encoded permease
proteins of the sulfate ABC transporter.
Length = 271
Score = 35.8 bits (83), Expect = 0.012
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 27/176 (15%)
Query: 88 GYWQETT-----ETLSLVLVSTFISMFIGVPLGVLAAW-YPRFYSIIRLFLDSMQTIPTF 141
+WQ T +L L+ I++ + G+L AW R+ R LD++ +P
Sbjct: 48 QFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFA 107
Query: 142 V-----------------YLIPALVLFGLGMV---PGI-VATIVFSIPTSVRLTRLGIIS 180
+ +L L FG+ ++ PG+ +A I S+P VR + +
Sbjct: 108 LSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEE 167
Query: 181 TPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN 236
+EAA GA+ +Q F +V LP ++ + T +L +V N
Sbjct: 168 LGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGN 223
>gnl|CDD|131194 TIGR02139, permease_CysT, sulfate ABC transporter, permease protein
CysT. This model represents CysT, one of two
homologous, tandem permeases in the sulfate ABC
transporter system; the other is CysW (TIGR02140). The
sulfate transporter has been described in E. coli as
transporting sulfate, thiosulfate, selenate, and
selenite. Sulfate transporters may also transport
molybdate ion if a specific molybdate transporter is not
present.
Length = 265
Score = 35.8 bits (83), Expect = 0.013
Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 27/158 (17%)
Query: 87 QGYWQETTE-----TLSLVLVSTFISMFIGVPLGVLAAWYPRFY-----SIIRLFLDSMQ 136
G+WQ TE L + I+ I G L AW Y I+ +D
Sbjct: 37 AGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPF 96
Query: 137 TIPTFVYLIPALVLFG-----------LGM------VPGIVATIVFSIPTSVRLTRLGII 179
+PT V I L+ LG+ + ++A + S+P VR + +
Sbjct: 97 ALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLE 156
Query: 180 STPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLT 217
L+EAA + GA+ +Q F +V LP +P ++
Sbjct: 157 EIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFA 194
>gnl|CDD|185010 PRK15050, PRK15050, 2-aminoethylphosphonate transport system
permease PhnU; Provisional.
Length = 296
Score = 35.8 bits (83), Expect = 0.014
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 150 LFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAI 209
L+ G V I+A I F P VR EAA + GA+P++V R+V LP A
Sbjct: 158 LYSPGGV--ILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAW 215
Query: 210 PQIVASLTQTIMLSL 224
P + A + ++L+L
Sbjct: 216 PALAAGGSLCLLLTL 230
>gnl|CDD|132049 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC transporter,
permease protein EhuC. Members of this family are
presumed to act as permease subunits of ectoine ABC
transporters. Operons containing this gene also contain
the other genes of the ABC transporter and typically are
found next to either ectoine utilization or ectoine
biosynthesis operons. Permease subunits EhuC and EhuD
are homologous.
Length = 214
Score = 33.3 bits (76), Expect = 0.079
Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 17/164 (10%)
Query: 80 GLLLIIKQGYWQETTETLSLVLVSTFISMFIGV-------PLGVLAAWYPRFYSIIRLFL 132
L ++ QG W TL+ +++T ++ F G+ L +A Y + L +
Sbjct: 2 AYLPLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLV 61
Query: 133 DSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTS---VRLTRLGIISTPPILKEAA 189
+ L L GL + P +V + + R + S EA
Sbjct: 62 Q-------LFWFYFVLPLIGLSLDPVTTGVMVLGLHAGAYGAEIVRGALSSVSVQQLEAC 114
Query: 190 CAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV 233
A T FQ R++ LP A+ +++ + + L + + +L+
Sbjct: 115 RALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLI 158
>gnl|CDD|182891 PRK10998, malG, maltose transporter permease; Provisional.
Length = 296
Score = 32.4 bits (74), Expect = 0.12
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 185 LKEAACAFGATPFQVFRKVELPFAIP 210
L+EAA GATP+Q FR V LP ++P
Sbjct: 188 LEEAAALDGATPWQAFRLVLLPLSVP 213
>gnl|CDD|182574 PRK10592, PRK10592, putrescine transporter subunit: membrane
component of ABC superfamily; Provisional.
Length = 281
Score = 32.1 bits (73), Expect = 0.15
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 185 LKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNG 237
++EAA GATP +VF + LP +P I++ LSL +V+ + V G
Sbjct: 170 IEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPG 222
>gnl|CDD|182873 PRK10971, PRK10971, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 277
Score = 31.3 bits (71), Expect = 0.26
Identities = 25/65 (38%), Positives = 33/65 (50%)
Query: 160 VATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT 219
VA SIP VR + + P +EAA GAT +Q FRKV LP P ++A + +
Sbjct: 145 VAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALS 204
Query: 220 IMLSL 224
SL
Sbjct: 205 FTRSL 209
>gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease
GltK; Provisional.
Length = 224
Score = 30.6 bits (69), Expect = 0.46
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 101 LVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIP--TFVYLIPALVLFGLGMVPG 158
++++F +PL ++ W FY I+ FL ++ + T + LI A+V F +
Sbjct: 55 FAKAYVNVFRSIPLVMVLLW---FYLIVPGFLQNVLGLSPKTDIRLISAMVAFSM----- 106
Query: 159 IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVA-SLT 217
F + R GI S AA A G T +Q + + LP A +V LT
Sbjct: 107 ------FEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT 160
Query: 218 QTIML--SLSMVVVTAL 232
Q I+L S+V V +L
Sbjct: 161 QGIVLFQDTSLVYVLSL 177
>gnl|CDD|182833 PRK10913, PRK10913, dipeptide transporter; Provisional.
Length = 300
Score = 30.5 bits (69), Expect = 0.49
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 106 ISMFIGVPLGVLAAWYPRFY-SIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIV 164
+S+ +GV LG++A ++ +II +D M +P+ + + + +FG +V +A
Sbjct: 111 LSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAALALTF 170
Query: 165 FSIPTSVRLTRLGII 179
++P VRLTR ++
Sbjct: 171 VALPHYVRLTRAAVL 185
>gnl|CDD|185089 PRK15135, PRK15135, histidine/lysine/arginine/ornithine ABC
transporter permease HisQ; Provisional.
Length = 228
Score = 29.8 bits (67), Expect = 0.75
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 187 EAACAFGATPFQVFRKVELP----FAIPQI 212
EAA AFG T QVFR++ P +A+P I
Sbjct: 125 EAATAFGFTRGQVFRRIMFPAMMRYALPGI 154
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 29.7 bits (67), Expect = 0.82
Identities = 16/92 (17%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 39 KAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLS 98
K + + + ++ P + +L+ L++ + T+++ A+ L+ I G+ ++++
Sbjct: 1 KRLRPLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLM--IDHGFSKDSSG--- 55
Query: 99 LVLVSTFISMFIGVPLGVLAAWYPRFYSIIRL 130
L++ + + + V L + RFY + L
Sbjct: 56 --LLNRYFAFLLVVALVLALGTAARFYLVTWL 85
>gnl|CDD|185055 PRK15100, PRK15100, amino acid ABC transporter permease;
Provisional.
Length = 220
Score = 29.3 bits (66), Expect = 1.0
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 24/148 (16%)
Query: 101 LVSTFISMFIGVPLGVLAA-----------WYPRFYSIIRLFLDSMQTIPTFV--YLIPA 147
L + MF G+ LG + A W RFY + +F + F+ Y +P
Sbjct: 23 LQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFY--VSIFRGTPLIAQLFMIYYGLPQ 80
Query: 148 LVLFGLGMVPGIVATIVFSIPTSV---RLTRLGIISTPPILKEAACAFGATPFQVFRKVE 204
FG+ + P A I S+ T+ R I S EAA + G T +Q R+
Sbjct: 81 ---FGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAI 137
Query: 205 LPFAIPQIVASLTQTIMLSLSMVVVTAL 232
LP A + L+ + +S+V T+L
Sbjct: 138 LPQAARTALPPLSNSF---ISLVKDTSL 162
>gnl|CDD|181910 PRK09497, potB, spermidine/putrescine ABC transporter membrane
protein; Reviewed.
Length = 285
Score = 29.3 bits (66), Expect = 1.1
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 185 LKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVG 234
L EAA GA Q F ++ +P +P I+A ++ ++ M V+ L+G
Sbjct: 180 LLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLG 229
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 29.2 bits (66), Expect = 1.2
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 241 PVLRALNTVDIGRGFESGL-CIVILAIILDR-LFSIPDPR 278
P++ A+N V +G GFE L C +I+A + F++P+PR
Sbjct: 96 PIIAAVNGVAMGGGFELALACDLIVAA--ENATFALPEPR 133
>gnl|CDD|182442 PRK10417, nikC, nickel transporter permease NikC; Provisional.
Length = 272
Score = 28.9 bits (65), Expect = 1.6
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 15/124 (12%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGM 155
L LVL + + IG G+L R D T PT + + + G G+
Sbjct: 76 CLLLVLA---LGLVIGGSAGLLGG---RVDQATMRVADMFMTFPTSILAFFMVGVLGTGL 129
Query: 156 VPGIVATIVFSIPTSVRLTRLGIISTPPILKE-----AACAFGATPFQVFRKVELPFAIP 210
I+A + R+ R +IS L++ AA GA +VF LP IP
Sbjct: 130 TNVIIAIALSHWAWYARMVRSLVIS----LRQREFVLAARLSGAGHVRVFIDHLLPAVIP 185
Query: 211 QIVA 214
Q++
Sbjct: 186 QLLV 189
>gnl|CDD|181907 PRK09494, glnP, glutamine ABC transporter permease protein;
Reviewed.
Length = 219
Score = 28.1 bits (63), Expect = 2.4
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 108 MFIGVPLGVLAAWYPRFYSIIRL-FLDSMQTIP-----TFVYLIPALVLFGL---GMVPG 158
+ IG+ G A+ + I L F++ ++ P F+Y + L
Sbjct: 34 LVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAA 93
Query: 159 IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQ 218
+V ++ S +TR ++S +EA A G + + R V P A+ +++ L
Sbjct: 94 VVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGN 153
Query: 219 TIMLSL 224
++S+
Sbjct: 154 QWIISI 159
>gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC;
Provisional.
Length = 319
Score = 27.0 bits (60), Expect = 5.3
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 151 FGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPF 207
FG+G++ V + IP + R TP ++KE+A G T ++V ++ LPF
Sbjct: 166 FGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPF 222
>gnl|CDD|183770 PRK12821, PRK12821, aspartyl/glutamyl-tRNA amidotransferase subunit
C-like protein; Provisional.
Length = 477
Score = 26.8 bits (59), Expect = 5.8
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 19 FVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLP---------PLVFVCVVSLLVLMVKR 69
FV +N WF IL+ I L +L++ + ++P F ++ LL
Sbjct: 275 FVLTKEN--WFYLILNVITLAGTSLLMINIAFIPIFDTQTTGQTYAFWLLIRLLFAPAIF 332
Query: 70 SITIAVGTAMGLLL--IIKQGYWQETTETLSLVLVSTFISM 108
+ I V + LLL I+ +G+ E +ET + + +F +
Sbjct: 333 LLDIIVIYPILLLLTPIMLKGFKTELSETQTKGIKKSFSDL 373
>gnl|CDD|132048 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter,
permease protein EhuD. Members of this family are
presumed to act as permease subunits of ectoine ABC
transporters. Operons containing this gene also contain
the other genes of the ABC transporter and typically are
found next to either ectoine utilization or ectoine
biosynthesis operons.
Length = 212
Score = 27.1 bits (60), Expect = 5.8
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 138 IPTFVYLIPALV--LFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGAT 195
+P +PALV + GLG+ A V+ R GI + P EAA A T
Sbjct: 76 LPDIGIRLPALVAGVLGLGLHYATYAAEVY---------RAGIEAVPRGQWEAATALNLT 126
Query: 196 PFQVFRKVELPFAIPQIVASL 216
Q +R + LP AIP I+ +L
Sbjct: 127 ARQTYRHIILPQAIPPIIPAL 147
>gnl|CDD|148040 pfam06197, DUF998, Protein of unknown function (DUF998). Family of
conserved archaeal proteins.
Length = 146
Score = 26.5 bits (59), Expect = 7.1
Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 1/113 (0%)
Query: 55 VFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPL 114
+ V + +LL+L + A+ G+ L + + + T V + F+ FI V +
Sbjct: 34 LLVLLYALLLLRKIERVGAALLILAGVFLALVGIFPEGTGYPHLFVALLFFLLGFIAVLI 93
Query: 115 GVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSI 167
+ + + + ++ F+++ GL + P + +V I
Sbjct: 94 LGIGLLLSGRFKKFGILIGALALASLFLFIGGLKTWPGLAI-PELEGIVVILI 145
>gnl|CDD|183889 PRK13199, psaB, photosystem I P700 chlorophyll a apoprotein A2;
Provisional.
Length = 742
Score = 26.7 bits (59), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 78 AMGLLLIIK-QGYWQETTETL 97
A G + +I +GYWQE ETL
Sbjct: 666 ATGFMFLISWRGYWQELIETL 686
>gnl|CDD|148956 pfam07632, DUF1593, Protein of unknown function (DUF1593). A
family of proteins in Rhodopirellula baltica that are
predicted to be secreted. Also, a member has been
identified in Caulobacter crescentus. These proteins mat
be related to pfam01156.
Length = 261
Score = 26.5 bits (59), Expect = 7.7
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 115 GVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIP 146
G L A YP +Y I S P F+YLIP
Sbjct: 217 GPLGAVYPDYYDFI-----SEGDTPAFLYLIP 243
>gnl|CDD|132306 TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter,
permease protein.
Length = 546
Score = 26.6 bits (59), Expect = 7.7
Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 39/225 (17%)
Query: 35 FILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIK----QGYW 90
+ + L+LF+L LP L+ ++ +S+ + G +GL + G
Sbjct: 6 LLAGMILALLLFLL--LP----------LLALLTKSVYDSDGDFIGLANFAEYFATPGLL 53
Query: 91 QETTETLSLVLVSTFISMFIGVPLGVLAAW-----------YPRFYSIIRLFLDSMQTIP 139
Q +L++ + T I VPL A+ R +++ L S+
Sbjct: 54 QSLGNSLTVSAIVTAIV----VPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAI 109
Query: 140 TFVYLI-------PALVLFGLGMVPGIVATIVF-SIPTSVRLTRLGIISTPPILKEAACA 191
+ +YL L F + GIV VF + P ++ + + L EAA A
Sbjct: 110 SLIYLFGNQGLLKGLLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARA 169
Query: 192 FGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN 236
GA+P++ F V LP A ++++ L ++ V ++G +
Sbjct: 170 MGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGD 214
>gnl|CDD|152382 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to 196
amino acids in length.
Length = 149
Score = 26.5 bits (59), Expect = 8.1
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 100 VLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMV 156
+ + I +G + V Y + R +D +P +V L+ +L FGLG++
Sbjct: 61 IAFFSGIPTALG--MAVFVVSY---LLVSRGIID----VPPWVTLLVSLGFFGLGLL 108
>gnl|CDD|184796 PRK14701, PRK14701, reverse gyrase; Provisional.
Length = 1638
Score = 26.4 bits (58), Expect = 8.4
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 128 IRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTS 170
+R + Q F I A +L LG+ G + +VFS+P
Sbjct: 1127 LRTWESGNQVG--FSNSIIAEILRRLGVRNGKLNGLVFSLPEE 1167
>gnl|CDD|162063 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. This model is
specific for the eukaryotic members members of this
family.
Length = 559
Score = 26.3 bits (58), Expect = 9.1
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 97 LSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFG--LG 154
S +V T + +GV G L A+ RF IR Q P FV+LI L
Sbjct: 205 ASFFVV-TCGGLLVGVVFGFLVAFITRFTHHIR------QIEPLFVFLISYLSYLFAETL 257
Query: 155 MVPGIVATI 163
+ GI+A I
Sbjct: 258 HLSGILALI 266
>gnl|CDD|180089 PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate
reductoisomerase; Provisional.
Length = 385
Score = 26.2 bits (59), Expect = 9.6
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 227 VVVTALVGSNGLGVPVLRAL 246
VVV A+VG+ GL +P L A+
Sbjct: 94 VVVAAIVGAAGL-LPTLAAI 112
>gnl|CDD|130320 TIGR01253, thiP, thiamine ABC transporter, permease protein. The
model describes thiamine ABC transporter, permease
protein in bacteria. The protein belongs to the larger
ABC transport system. It consists of atleast three
components: the inner mebrane permease; thiamine binding
protein; an ATP-binding subunit. It has been
experimentally demonstrated that the mutants in the
various steps in the de novo synthesis of the thiamine
and the biologically active form, namely thiamine
pyrophosphate can be exogenously supplemented with
thiamine, thiamine monophosphate (TMP) or thiamine
pyrophosphate (TPP).
Length = 519
Score = 26.0 bits (57), Expect = 9.8
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 159 IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQ 218
++A + F+IP + +L + + P ++ A G + F+ VE P Q + +
Sbjct: 136 LIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAAL 195
Query: 219 TIMLSL-SMVVVTALVG 234
ML S V +L G
Sbjct: 196 IFMLCFASFATVLSLGG 212
>gnl|CDD|184311 PRK13764, PRK13764, ATPase; Provisional.
Length = 602
Score = 26.3 bits (59), Expect = 9.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 153 LGMVPGIVATIVF 165
LGM+P IV T++F
Sbjct: 374 LGMIPQIVDTVIF 386
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.331 0.146 0.438
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,680,017
Number of extensions: 308670
Number of successful extensions: 1215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1178
Number of HSP's successfully gapped: 173
Length of query: 281
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 189
Effective length of database: 4,006,537
Effective search space: 757235493
Effective search space used: 757235493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.4 bits)