RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] (281 letters) >gnl|CDD|132457 TIGR03416, ABC_choXWV_perm, choline ABC transporter, permease protein. Length = 267 Score = 327 bits (841), Expect = 2e-90 Identities = 156/264 (59%), Positives = 205/264 (77%) Query: 9 IPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVK 68 IP+G + + F LT NG +F + L+F+L ++ +L +LQ PPL+ + + + L ++ Sbjct: 4 IPIGAWAKSFVDWLTDNGAFFFDALAFVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQ 63 Query: 69 RSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSII 128 RS ++A+ A+GLLLII QGYW+ET ETL+LVL +T + M IGVPLG+ AA P Y+I+ Sbjct: 64 RSWSLALFVALGLLLIINQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHRPWLYAIM 123 Query: 129 RLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEA 188 R LD MQT+PTFVYLIPALVLFGLGMVPG+++T++F+IP +RLT LGI S P L EA Sbjct: 124 RPVLDLMQTLPTFVYLIPALVLFGLGMVPGLISTVIFAIPAPIRLTHLGISSVPQELVEA 183 Query: 189 ACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNT 248 AFGATP Q+ KVELP+A+PQI+A LTQTIMLSLSMVV+ ALVG++GLGVPV+RALNT Sbjct: 184 GEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRALNT 243 Query: 249 VDIGRGFESGLCIVILAIILDRLF 272 V+I GFE+GL IV+LAI+LDR+F Sbjct: 244 VNIALGFEAGLAIVVLAIVLDRIF 267 >gnl|CDD|182861 PRK10952, PRK10952, glycine betaine transporter membrane protein; Provisional. Length = 355 Score = 189 bits (482), Expect = 6e-49 Identities = 103/224 (45%), Positives = 145/224 (64%), Gaps = 1/224 (0%) Query: 48 LQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFIS 107 L +P V + V +L+ + + + V T + L+ I G W + TL+LVL + Sbjct: 102 LLGMPAPVAIIVFALIAWQIS-GVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFC 160 Query: 108 MFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSI 167 + IG+PLG+ A PR IIR LD+MQT P FVYL+P ++LFG+G VPG+V TI+F++ Sbjct: 161 IVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFAL 220 Query: 168 PTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMV 227 P VRLT LGI P L EA+ +FGA+P Q+ KV+LP A+P I+A + QT+ML+LSMV Sbjct: 221 PPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMV 280 Query: 228 VVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILAIILDRL 271 V+ +++ GLG VLR + +D+G G+ IVILAIILDRL Sbjct: 281 VIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRL 324 >gnl|CDD|162201 TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). Length = 250 Score = 73.3 bits (181), Expect = 6e-14 Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 4/187 (2%) Query: 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAA----WYPRFYSIIRLFLDSMQTIPTFVYL 144 + ETL++ ++ T ++ + +PL +LAA P + RL L+ ++ IP V+ Sbjct: 56 ILKALLETLAMAILGTVLAAILALPLALLAARNITPSPWLSGLARLLLNFLRAIPELVWA 115 Query: 145 IPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVE 204 + + GLG G++A ++ +L I P EA A GA+ QV R Sbjct: 116 LIFVAAVGLGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGV 175 Query: 205 LPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVIL 264 LP +PQ ++ +++ V LVG+ G+G+ + +A+ D L I+++ Sbjct: 176 LPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGIGLELDQAIGLFDYDEVSAIILVILVV 235 Query: 265 AIILDRL 271 +I+D + Sbjct: 236 VVIIDLI 242 >gnl|CDD|182726 PRK10782, PRK10782, DL-methionine transporter permease subunit; Provisional. Length = 217 Score = 65.1 bits (159), Expect = 2e-11 Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 18/174 (10%) Query: 80 GLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVL--------AAWYPRFYSIIRLF 131 ++ ++ +G W ETL++ VS F IG+P+GVL + Y + Sbjct: 4 AMMWLLVRGVW----ETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSAL 59 Query: 132 LDSMQTIP---TFVYLIP---ALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPIL 185 ++ ++IP V++IP +V +G+ IV V + P R+ ++ P L Sbjct: 60 VNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGL 119 Query: 186 KEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG 239 EA+ A GATP Q+ RKV LP A+P +V + T T++ + + VG+ GLG Sbjct: 120 IEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLG 173 >gnl|CDD|162141 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA. This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. Length = 271 Score = 58.0 bits (141), Expect = 3e-09 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 18/141 (12%) Query: 101 LVSTFISMFIGVPLGVLAAWY-------PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL 153 L+ +++ I VPLG+ AA Y RF +IR +D + +P+ V + F L Sbjct: 60 LLLILLAIVIAVPLGIGAAIYLAEYANESRFTKVIRFAVDILAGVPSIVVGLFGYGFFVL 119 Query: 154 GMVP-------GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELP 206 M+ G +A + +P +R T + + P L+EA+ A GAT +Q KV LP Sbjct: 120 TMLGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLREASYALGATKWQTIFKVVLP 179 Query: 207 FAIPQIVASLTQTIMLSLSMV 227 A+P I+ I+LS++ Sbjct: 180 AALPGILTG----IILSIARA 196 >gnl|CDD|162724 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. Length = 295 Score = 57.3 bits (139), Expect = 5e-09 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 28/171 (16%) Query: 101 LVSTFISMFIGVPLGVLAAWY------PRFYSIIRLFLDSMQTIPTFVY-------LIPA 147 L+++ I++ I VP+G+ A + R S+++ ++ + IP+ VY L+P Sbjct: 69 LITSLIALLIAVPVGIGIAIFLSEIAPKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVPF 128 Query: 148 LV---------------LFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAF 192 L LFG ++ + + +PT ++R + + P KEA+ A Sbjct: 129 LKPHFQPFLGSNLGLIPLFGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYAL 188 Query: 193 GATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVL 243 GAT ++ R+V LP A IV ++ + +L + +V N + L Sbjct: 189 GATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGNVFPISPL 239 >gnl|CDD|182276 PRK10160, PRK10160, taurine transporter subunit; Provisional. Length = 275 Score = 47.1 bits (112), Expect = 6e-06 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 3/158 (1%) Query: 90 WQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALV 149 WQ +L+ ++++ ++ IG+P+G+ P I+ ++ + +P YL ++ Sbjct: 77 WQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVI 136 Query: 150 LFGLGMVPGIVATIVFSIPTSVRLTRL-GIISTPPILKEAACAFGATPFQVFRKVELPFA 208 FG+G I+ I +I V ++ L G+ S + AA + GA+ QV V LP A Sbjct: 137 WFGIGETSKIL-LIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGA 195 Query: 209 IPQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPVLRA 245 +P+I+ L + + S +V L+ + GLG V A Sbjct: 196 LPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSA 233 >gnl|CDD|162726 TIGR02141, modB_ABC, molybdate ABC transporter, permease protein. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. Length = 208 Score = 46.5 bits (111), Expect = 8e-06 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 24/162 (14%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIP-------TFVYLI--- 145 +L + +++T + + +G+P+ A W R + L+ + T+P YL+ Sbjct: 3 SLKVAVIATLLLLPLGIPV---AWWLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAF 59 Query: 146 -------PALVLFGLGMV---PGIV-ATIVFSIPTSVRLTRLGIISTPPILKEAACAFGA 194 L LFG+ +V G V A+++ S P V+ R + P L+EAA GA Sbjct: 60 GPNGPIGKLLELFGISLVFTFAGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGA 119 Query: 195 TPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN 236 + Q F KV LP A P ++A + +L T + N Sbjct: 120 SEIQTFLKVTLPLAFPGLLAGCVLSFARALGEFGATLMFAGN 161 >gnl|CDD|130643 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity. Length = 225 Score = 45.9 bits (109), Expect = 1e-05 Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 18/159 (11%) Query: 101 LVSTFISMFIGVPLG-VLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPG- 158 L S +++ IG+P VLA ++ LD +P V + L+LFG + G Sbjct: 31 LASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGP 90 Query: 159 ----------------IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRK 202 ++A + P VR+ R S P ++ A + GA P + FRK Sbjct: 91 YLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRK 150 Query: 203 VELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVP 241 + LP A P ++A L +L T + + G Sbjct: 151 ITLPMARPGLLAGLVLAWARALGEFGATLMFAGSIQGKT 189 >gnl|CDD|132270 TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). Length = 312 Score = 45.0 bits (106), Expect = 2e-05 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 11/178 (6%) Query: 61 SLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW 120 +L + + + +G+A+ +L E L+ F+ +FI P ++A Sbjct: 97 TLQIAFAAAAGALLLGSALAAILFFIPFPGAE--------LIGRFLDLFIAFPSFLIAFA 148 Query: 121 YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIIS 180 + Y L ++ F P LFG G V I+A I F P +R Sbjct: 149 FIFIYGSAGLLNGALMRAFAF-DAPPLDFLFGAGGV--ILAEITFFTPFVMRPLLAAFAQ 205 Query: 181 TPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGL 238 L EAA GA + +V P A+P I A +L+L+ + +G+ GL Sbjct: 206 IDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGILCFLLTLNEFGILLFIGAAGL 263 >gnl|CDD|185040 PRK15082, PRK15082, glutathione ABC transporter permease GsiD; Provisional. Length = 301 Score = 43.2 bits (102), Expect = 7e-05 Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 10/130 (7%) Query: 101 LVSTFISMFIGVPLGVLAAWYPRFYS-IIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGI 159 S I IG LG+LA +Y ++ II D + P + I + + G GM I Sbjct: 107 FFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVI 166 Query: 160 VATIVFSIPTSVRLTRLGIISTPPILK-----EAACAFGATPFQVFRKVELPFAIPQIVA 214 +A +FSIP RL R +LK E+A + GA+ + + + LP + IV Sbjct: 167 IAVAIFSIPAFARLVR----GNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVV 222 Query: 215 SLTQTIMLSL 224 T I S+ Sbjct: 223 YFTMRIGTSI 232 >gnl|CDD|181841 PRK09421, modB, molybdate ABC transporter permease protein; Reviewed. Length = 229 Score = 41.8 bits (99), Expect = 2e-04 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 27/143 (18%) Query: 97 LSLVLVSTFISMFIGVPLGVLAAW-YPRFYSIIRLFLDSMQTIPTFV------YLIPALV 149 + L L + +++ +P G+L AW R + LDS+ +P + YL+ L+ Sbjct: 11 VLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLL--LI 68 Query: 150 LFG--------LGMVPGIV----------ATIVFSIPTSVRLTRLGIISTPPILKEAACA 191 G L GI A V + P VR RL + + L++AA Sbjct: 69 SMGRRGFIGQWLYEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAART 128 Query: 192 FGATPFQVFRKVELPFAIPQIVA 214 GA+P++VF + LP +P I+A Sbjct: 129 LGASPWRVFFTITLPLTLPGIIA 151 >gnl|CDD|182131 PRK09881, PRK09881, D-ala-D-ala transporter subunit; Provisional. Length = 296 Score = 40.6 bits (95), Expect = 5e-04 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 7/153 (4%) Query: 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPA 147 G Q L +V ++ I +G GVL R +II +D M +IP+ V + Sbjct: 92 GSQQSILAGLVVVAIAGMIGSLLGCLSGVLGG---RADAIIMRIMDIMLSIPSLVLTMAL 148 Query: 148 LVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPP-ILKEAACAFGATPFQVFRKVELP 206 G + ++A + IP VRL R + +AA FGA+ + + L Sbjct: 149 AAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILR 208 Query: 207 FAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG 239 ++P ++ + I S +++ A +G GLG Sbjct: 209 NSLPPLIVQASLDIG---SAILMAATLGFIGLG 238 >gnl|CDD|131837 TIGR02790, nickel_nikC, nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. Length = 258 Score = 38.5 bits (90), Expect = 0.002 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 10/124 (8%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG 154 +L L+ + + IG+ +G LA + R I D + PT + + + + G G Sbjct: 64 SLGSALLVLGLVLTIGLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPG 123 Query: 155 MVPGIVATIVFSIPTSVRLTRLGIISTPPILKE-----AACAFGATPFQVFRKVELPFAI 209 + I+A ++ R+ R ++S LK+ AA GA+ +Q+ R+ LP + Sbjct: 124 LENVIIAIVLVHWAWYARMVRGMVVS----LKQREFVLAARTSGASHWQIIRRHILPNIL 179 Query: 210 PQIV 213 I+ Sbjct: 180 SPII 183 >gnl|CDD|132299 TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 272 Score = 38.1 bits (88), Expect = 0.003 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 8/145 (5%) Query: 138 IPTFVYLIPALVLFGLGMV-----PGIVATIVFSI--PTSVRLTRLGIISTPPILKEAAC 190 IP+ + L+ F G + IV F++ R + ++EAA Sbjct: 119 IPSVSLGLAILIAFHAGPLDLNGSLAIVLFAHFALILAFCFRCAAAALAPELADIEEAAA 178 Query: 191 AFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVD 250 + GA P R V LP +P I+A+L LSL + T ++ G + D Sbjct: 179 SLGAPPAMRLRHVLLPLLMPAIMAALALGFALSLGELGATLMIYPPGFATLPIAIFGATD 238 Query: 251 IGRGFE-SGLCIVILAIILDRLFSI 274 G + + L I++LA L L +I Sbjct: 239 RGNIADAAALSILLLAASLLALIAI 263 >gnl|CDD|183065 PRK11268, pstA, phosphate transporter permease subunit PtsA; Provisional. Length = 295 Score = 37.0 bits (86), Expect = 0.006 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 14/128 (10%) Query: 98 SLVLVSTFISMFIGVPLGVLAAWYPRFY-------SIIRLFLDSMQTIPT-----FVYLI 145 S +L+ + +G PLG++A Y Y +IR D + + P+ FVY I Sbjct: 86 SGLLI--LWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTI 143 Query: 146 PALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVEL 205 + G++A + IP +R T + P L+EAA A G +++ + L Sbjct: 144 VVAQMEHFSGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITL 203 Query: 206 PFAIPQIV 213 ++ I+ Sbjct: 204 KASVSGIM 211 >gnl|CDD|181912 PRK09500, potC, spermidine/putrescine ABC transporter membrane protein; Reviewed. Length = 256 Score = 36.5 bits (85), Expect = 0.008 Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 12/171 (7%) Query: 91 QETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTI----PTFVYLIP 146 Q +L++ + S + IG L +A + RF + F+ M + P V I Sbjct: 57 QAAQHSLTMAVFSATFATLIGS-LTAVALYRYRFRG--KKFVSGMLFVVMMSPDIVMAIS 113 Query: 147 ALVLF-----GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFR 201 LVLF LG + A I F +P V + + EAA GA+ F + R Sbjct: 114 LLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILR 173 Query: 202 KVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIG 252 K+ LP A+P + A + LSL VVV++ V + L+ + V +G Sbjct: 174 KIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVG 224 >gnl|CDD|162139 TIGR00969, 3a0106s02, sulfate ABC transporter, permease protein. This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. Length = 271 Score = 35.8 bits (83), Expect = 0.012 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 27/176 (15%) Query: 88 GYWQETT-----ETLSLVLVSTFISMFIGVPLGVLAAW-YPRFYSIIRLFLDSMQTIPTF 141 +WQ T +L L+ I++ + G+L AW R+ R LD++ +P Sbjct: 48 QFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFA 107 Query: 142 V-----------------YLIPALVLFGLGMV---PGI-VATIVFSIPTSVRLTRLGIIS 180 + +L L FG+ ++ PG+ +A I S+P VR + + Sbjct: 108 LSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEE 167 Query: 181 TPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN 236 +EAA GA+ +Q F +V LP ++ + T +L +V N Sbjct: 168 LGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGN 223 >gnl|CDD|131194 TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. Length = 265 Score = 35.8 bits (83), Expect = 0.013 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 27/158 (17%) Query: 87 QGYWQETTE-----TLSLVLVSTFISMFIGVPLGVLAAWYPRFY-----SIIRLFLDSMQ 136 G+WQ TE L + I+ I G L AW Y I+ +D Sbjct: 37 AGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPF 96 Query: 137 TIPTFVYLIPALVLFG-----------LGM------VPGIVATIVFSIPTSVRLTRLGII 179 +PT V I L+ LG+ + ++A + S+P VR + + Sbjct: 97 ALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLE 156 Query: 180 STPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLT 217 L+EAA + GA+ +Q F +V LP +P ++ Sbjct: 157 EIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFA 194 >gnl|CDD|185010 PRK15050, PRK15050, 2-aminoethylphosphonate transport system permease PhnU; Provisional. Length = 296 Score = 35.8 bits (83), Expect = 0.014 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 150 LFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAI 209 L+ G V I+A I F P VR EAA + GA+P++V R+V LP A Sbjct: 158 LYSPGGV--ILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAW 215 Query: 210 PQIVASLTQTIMLSL 224 P + A + ++L+L Sbjct: 216 PALAAGGSLCLLLTL 230 >gnl|CDD|132049 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC transporter, permease protein EhuC. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous. Length = 214 Score = 33.3 bits (76), Expect = 0.079 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 17/164 (10%) Query: 80 GLLLIIKQGYWQETTETLSLVLVSTFISMFIGV-------PLGVLAAWYPRFYSIIRLFL 132 L ++ QG W TL+ +++T ++ F G+ L +A Y + L + Sbjct: 2 AYLPLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLV 61 Query: 133 DSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTS---VRLTRLGIISTPPILKEAA 189 + L L GL + P +V + + R + S EA Sbjct: 62 Q-------LFWFYFVLPLIGLSLDPVTTGVMVLGLHAGAYGAEIVRGALSSVSVQQLEAC 114 Query: 190 CAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV 233 A T FQ R++ LP A+ +++ + + L + + +L+ Sbjct: 115 RALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLI 158 >gnl|CDD|182891 PRK10998, malG, maltose transporter permease; Provisional. Length = 296 Score = 32.4 bits (74), Expect = 0.12 Identities = 15/26 (57%), Positives = 19/26 (73%) Query: 185 LKEAACAFGATPFQVFRKVELPFAIP 210 L+EAA GATP+Q FR V LP ++P Sbjct: 188 LEEAAALDGATPWQAFRLVLLPLSVP 213 >gnl|CDD|182574 PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional. Length = 281 Score = 32.1 bits (73), Expect = 0.15 Identities = 19/53 (35%), Positives = 29/53 (54%) Query: 185 LKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNG 237 ++EAA GATP +VF + LP +P I++ LSL +V+ + V G Sbjct: 170 IEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPG 222 >gnl|CDD|182873 PRK10971, PRK10971, sulfate/thiosulfate transporter subunit; Provisional. Length = 277 Score = 31.3 bits (71), Expect = 0.26 Identities = 25/65 (38%), Positives = 33/65 (50%) Query: 160 VATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT 219 VA SIP VR + + P +EAA GAT +Q FRKV LP P ++A + + Sbjct: 145 VAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALS 204 Query: 220 IMLSL 224 SL Sbjct: 205 FTRSL 209 >gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease GltK; Provisional. Length = 224 Score = 30.6 bits (69), Expect = 0.46 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 19/137 (13%) Query: 101 LVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIP--TFVYLIPALVLFGLGMVPG 158 ++++F +PL ++ W FY I+ FL ++ + T + LI A+V F + Sbjct: 55 FAKAYVNVFRSIPLVMVLLW---FYLIVPGFLQNVLGLSPKTDIRLISAMVAFSM----- 106 Query: 159 IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVA-SLT 217 F + R GI S AA A G T +Q + + LP A +V LT Sbjct: 107 ------FEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT 160 Query: 218 QTIML--SLSMVVVTAL 232 Q I+L S+V V +L Sbjct: 161 QGIVLFQDTSLVYVLSL 177 >gnl|CDD|182833 PRK10913, PRK10913, dipeptide transporter; Provisional. Length = 300 Score = 30.5 bits (69), Expect = 0.49 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 106 ISMFIGVPLGVLAAWYPRFY-SIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIV 164 +S+ +GV LG++A ++ +II +D M +P+ + + + +FG +V +A Sbjct: 111 LSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAALALTF 170 Query: 165 FSIPTSVRLTRLGII 179 ++P VRLTR ++ Sbjct: 171 VALPHYVRLTRAAVL 185 >gnl|CDD|185089 PRK15135, PRK15135, histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional. Length = 228 Score = 29.8 bits (67), Expect = 0.75 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 4/30 (13%) Query: 187 EAACAFGATPFQVFRKVELP----FAIPQI 212 EAA AFG T QVFR++ P +A+P I Sbjct: 125 EAATAFGFTRGQVFRRIMFPAMMRYALPGI 154 >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 29.7 bits (67), Expect = 0.82 Identities = 16/92 (17%), Positives = 44/92 (47%), Gaps = 7/92 (7%) Query: 39 KAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLS 98 K + + + ++ P + +L+ L++ + T+++ A+ L+ I G+ ++++ Sbjct: 1 KRLRPLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLM--IDHGFSKDSSG--- 55 Query: 99 LVLVSTFISMFIGVPLGVLAAWYPRFYSIIRL 130 L++ + + + V L + RFY + L Sbjct: 56 --LLNRYFAFLLVVALVLALGTAARFYLVTWL 85 >gnl|CDD|185055 PRK15100, PRK15100, amino acid ABC transporter permease; Provisional. Length = 220 Score = 29.3 bits (66), Expect = 1.0 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 24/148 (16%) Query: 101 LVSTFISMFIGVPLGVLAA-----------WYPRFYSIIRLFLDSMQTIPTFV--YLIPA 147 L + MF G+ LG + A W RFY + +F + F+ Y +P Sbjct: 23 LQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFY--VSIFRGTPLIAQLFMIYYGLPQ 80 Query: 148 LVLFGLGMVPGIVATIVFSIPTSV---RLTRLGIISTPPILKEAACAFGATPFQVFRKVE 204 FG+ + P A I S+ T+ R I S EAA + G T +Q R+ Sbjct: 81 ---FGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAI 137 Query: 205 LPFAIPQIVASLTQTIMLSLSMVVVTAL 232 LP A + L+ + +S+V T+L Sbjct: 138 LPQAARTALPPLSNSF---ISLVKDTSL 162 >gnl|CDD|181910 PRK09497, potB, spermidine/putrescine ABC transporter membrane protein; Reviewed. Length = 285 Score = 29.3 bits (66), Expect = 1.1 Identities = 16/50 (32%), Positives = 27/50 (54%) Query: 185 LKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVG 234 L EAA GA Q F ++ +P +P I+A ++ ++ M V+ L+G Sbjct: 180 LLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLG 229 >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional. Length = 259 Score = 29.2 bits (66), Expect = 1.2 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 4/40 (10%) Query: 241 PVLRALNTVDIGRGFESGL-CIVILAIILDR-LFSIPDPR 278 P++ A+N V +G GFE L C +I+A + F++P+PR Sbjct: 96 PIIAAVNGVAMGGGFELALACDLIVAA--ENATFALPEPR 133 >gnl|CDD|182442 PRK10417, nikC, nickel transporter permease NikC; Provisional. Length = 272 Score = 28.9 bits (65), Expect = 1.6 Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 15/124 (12%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGM 155 L LVL + + IG G+L R D T PT + + + G G+ Sbjct: 76 CLLLVLA---LGLVIGGSAGLLGG---RVDQATMRVADMFMTFPTSILAFFMVGVLGTGL 129 Query: 156 VPGIVATIVFSIPTSVRLTRLGIISTPPILKE-----AACAFGATPFQVFRKVELPFAIP 210 I+A + R+ R +IS L++ AA GA +VF LP IP Sbjct: 130 TNVIIAIALSHWAWYARMVRSLVIS----LRQREFVLAARLSGAGHVRVFIDHLLPAVIP 185 Query: 211 QIVA 214 Q++ Sbjct: 186 QLLV 189 >gnl|CDD|181907 PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed. Length = 219 Score = 28.1 bits (63), Expect = 2.4 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 9/126 (7%) Query: 108 MFIGVPLGVLAAWYPRFYSIIRL-FLDSMQTIP-----TFVYLIPALVLFGL---GMVPG 158 + IG+ G A+ + I L F++ ++ P F+Y + L Sbjct: 34 LVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAA 93 Query: 159 IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQ 218 +V ++ S +TR ++S +EA A G + + R V P A+ +++ L Sbjct: 94 VVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGN 153 Query: 219 TIMLSL 224 ++S+ Sbjct: 154 QWIISI 159 >gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC; Provisional. Length = 319 Score = 27.0 bits (60), Expect = 5.3 Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 151 FGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPF 207 FG+G++ V + IP + R TP ++KE+A G T ++V ++ LPF Sbjct: 166 FGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPF 222 >gnl|CDD|183770 PRK12821, PRK12821, aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional. Length = 477 Score = 26.8 bits (59), Expect = 5.8 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 13/101 (12%) Query: 19 FVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLP---------PLVFVCVVSLLVLMVKR 69 FV +N WF IL+ I L +L++ + ++P F ++ LL Sbjct: 275 FVLTKEN--WFYLILNVITLAGTSLLMINIAFIPIFDTQTTGQTYAFWLLIRLLFAPAIF 332 Query: 70 SITIAVGTAMGLLL--IIKQGYWQETTETLSLVLVSTFISM 108 + I V + LLL I+ +G+ E +ET + + +F + Sbjct: 333 LLDIIVIYPILLLLTPIMLKGFKTELSETQTKGIKKSFSDL 373 >gnl|CDD|132048 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter, permease protein EhuD. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Length = 212 Score = 27.1 bits (60), Expect = 5.8 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 11/81 (13%) Query: 138 IPTFVYLIPALV--LFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGAT 195 +P +PALV + GLG+ A V+ R GI + P EAA A T Sbjct: 76 LPDIGIRLPALVAGVLGLGLHYATYAAEVY---------RAGIEAVPRGQWEAATALNLT 126 Query: 196 PFQVFRKVELPFAIPQIVASL 216 Q +R + LP AIP I+ +L Sbjct: 127 ARQTYRHIILPQAIPPIIPAL 147 >gnl|CDD|148040 pfam06197, DUF998, Protein of unknown function (DUF998). Family of conserved archaeal proteins. Length = 146 Score = 26.5 bits (59), Expect = 7.1 Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 1/113 (0%) Query: 55 VFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPL 114 + V + +LL+L + A+ G+ L + + + T V + F+ FI V + Sbjct: 34 LLVLLYALLLLRKIERVGAALLILAGVFLALVGIFPEGTGYPHLFVALLFFLLGFIAVLI 93 Query: 115 GVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSI 167 + + + + ++ F+++ GL + P + +V I Sbjct: 94 LGIGLLLSGRFKKFGILIGALALASLFLFIGGLKTWPGLAI-PELEGIVVILI 145 >gnl|CDD|183889 PRK13199, psaB, photosystem I P700 chlorophyll a apoprotein A2; Provisional. Length = 742 Score = 26.7 bits (59), Expect = 7.3 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Query: 78 AMGLLLIIK-QGYWQETTETL 97 A G + +I +GYWQE ETL Sbjct: 666 ATGFMFLISWRGYWQELIETL 686 >gnl|CDD|148956 pfam07632, DUF1593, Protein of unknown function (DUF1593). A family of proteins in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus. These proteins mat be related to pfam01156. Length = 261 Score = 26.5 bits (59), Expect = 7.7 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 5/32 (15%) Query: 115 GVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIP 146 G L A YP +Y I S P F+YLIP Sbjct: 217 GPLGAVYPDYYDFI-----SEGDTPAFLYLIP 243 >gnl|CDD|132306 TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. Length = 546 Score = 26.6 bits (59), Expect = 7.7 Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 39/225 (17%) Query: 35 FILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIK----QGYW 90 + + L+LF+L LP L+ ++ +S+ + G +GL + G Sbjct: 6 LLAGMILALLLFLL--LP----------LLALLTKSVYDSDGDFIGLANFAEYFATPGLL 53 Query: 91 QETTETLSLVLVSTFISMFIGVPLGVLAAW-----------YPRFYSIIRLFLDSMQTIP 139 Q +L++ + T I VPL A+ R +++ L S+ Sbjct: 54 QSLGNSLTVSAIVTAIV----VPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAI 109 Query: 140 TFVYLI-------PALVLFGLGMVPGIVATIVF-SIPTSVRLTRLGIISTPPILKEAACA 191 + +YL L F + GIV VF + P ++ + + L EAA A Sbjct: 110 SLIYLFGNQGLLKGLLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARA 169 Query: 192 FGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN 236 GA+P++ F V LP A ++++ L ++ V ++G + Sbjct: 170 MGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGD 214 >gnl|CDD|152382 pfam11947, DUF3464, Protein of unknown function (DUF3464). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. Length = 149 Score = 26.5 bits (59), Expect = 8.1 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 9/57 (15%) Query: 100 VLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMV 156 + + I +G + V Y + R +D +P +V L+ +L FGLG++ Sbjct: 61 IAFFSGIPTALG--MAVFVVSY---LLVSRGIID----VPPWVTLLVSLGFFGLGLL 108 >gnl|CDD|184796 PRK14701, PRK14701, reverse gyrase; Provisional. Length = 1638 Score = 26.4 bits (58), Expect = 8.4 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Query: 128 IRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTS 170 +R + Q F I A +L LG+ G + +VFS+P Sbjct: 1127 LRTWESGNQVG--FSNSIIAEILRRLGVRNGKLNGLVFSLPEE 1167 >gnl|CDD|162063 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family. Length = 559 Score = 26.3 bits (58), Expect = 9.1 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Query: 97 LSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFG--LG 154 S +V T + +GV G L A+ RF IR Q P FV+LI L Sbjct: 205 ASFFVV-TCGGLLVGVVFGFLVAFITRFTHHIR------QIEPLFVFLISYLSYLFAETL 257 Query: 155 MVPGIVATI 163 + GI+A I Sbjct: 258 HLSGILALI 266 >gnl|CDD|180089 PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional. Length = 385 Score = 26.2 bits (59), Expect = 9.6 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%) Query: 227 VVVTALVGSNGLGVPVLRAL 246 VVV A+VG+ GL +P L A+ Sbjct: 94 VVVAAIVGAAGL-LPTLAAI 112 >gnl|CDD|130320 TIGR01253, thiP, thiamine ABC transporter, permease protein. The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). Length = 519 Score = 26.0 bits (57), Expect = 9.8 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Query: 159 IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQ 218 ++A + F+IP + +L + + P ++ A G + F+ VE P Q + + Sbjct: 136 LIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAAL 195 Query: 219 TIMLSL-SMVVVTALVG 234 ML S V +L G Sbjct: 196 IFMLCFASFATVLSLGG 212 >gnl|CDD|184311 PRK13764, PRK13764, ATPase; Provisional. Length = 602 Score = 26.3 bits (59), Expect = 9.9 Identities = 8/13 (61%), Positives = 11/13 (84%) Query: 153 LGMVPGIVATIVF 165 LGM+P IV T++F Sbjct: 374 LGMIPQIVDTVIF 386 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.331 0.146 0.438 Gapped Lambda K H 0.267 0.0705 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,680,017 Number of extensions: 308670 Number of successful extensions: 1215 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1178 Number of HSP's successfully gapped: 173 Length of query: 281 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 189 Effective length of database: 4,006,537 Effective search space: 757235493 Effective search space used: 757235493 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 56 (25.4 bits)