RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC
transporter, permease protein [Candidatus Liberibacter asiaticus str.
psy62]
         (281 letters)



>3dhw_A D-methionine transport system permease protein METI;
           ABC-transporter, methionine uptake transporter, membrane
           protein, amino-acid transport; 3.70A {Escherichia coli
           K12} (A:)
          Length = 217

 Score = 66.5 bits (162), Expect = 4e-12
 Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 15/201 (7%)

Query: 89  YWQETTETLSLVLVSTFISMFIGVPLGVLAAWY--------PRFYSIIRLFLDSMQTIPT 140
             +   ETL++  VS F    IG+P+GVL             + Y  +   ++  ++IP 
Sbjct: 9   LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPF 68

Query: 141 FVYLI------PALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGA 194
            + L+        +V   +G+   IV   V + P   R+    ++  P  L EA+ A GA
Sbjct: 69  IILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 128

Query: 195 TPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG-VPVLRALNTVDIGR 253
           TP Q+ RKV LP A+P +V + T T++  +    +   VG+ GLG +         +   
Sbjct: 129 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATV 188

Query: 254 GFESGLCIVILAIILDRLFSI 274
                + +VIL  ++      
Sbjct: 189 MNTVLVLLVILVYLIQFAGDR 209


>2r6g_F Maltose transport system permease protein MALF; ABC
           transporter, catalytic intermediate, E. coli maltose
           transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli
           K12} (F:269-326,F:360-453)
          Length = 152

 Score = 65.6 bits (160), Expect = 8e-12
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 7/151 (4%)

Query: 89  YWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPAL 148
           +      T+   L++ F+++ +G+ L  L  W        +     +  +P         
Sbjct: 9   FLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALR---GKAVYRVLLILP----YAAWF 61

Query: 149 VLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFA 208
                     I+       P  + L    + + P  L EA+   GA PFQ F K+ LP  
Sbjct: 62  SDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLL 121

Query: 209 IPQIVASLTQTIMLSLSMVVVTALVGSNGLG 239
           I  +   +  +   + +  V+  L+ + G  
Sbjct: 122 IKPLTPLMIASFAFNFNNFVLIQLLTNGGPD 152


>3d31_C Sulfate/molybdate ABC transporter, permease protein;
           ATP-binding, nucleotide-binding, membrane,
           transmembrane, transport protein; 3.00A {Methanosarcina
           acetivorans} (C:)
          Length = 295

 Score = 65.2 bits (158), Expect = 1e-11
 Identities = 42/247 (17%), Positives = 86/247 (34%), Gaps = 17/247 (6%)

Query: 39  KAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLS 98
           K          +   L+ + +   L L       I    +  +     +        +L 
Sbjct: 30  KTRKFEPLTFVFSFLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFLSLY 89

Query: 99  LVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVP 157
              ++T +++ +G P G + A +      ++   +D    +P  V  I  L +FG   + 
Sbjct: 90  AGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLI 149

Query: 158 G----------------IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFR 201
           G                +VA +  S+P      R G  S  P L+ AA + GA  ++ F 
Sbjct: 150 GEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFF 209

Query: 202 KVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCI 261
            V LP +   ++     T   ++S      ++    +  P L     +  G      + +
Sbjct: 210 FVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAV 269

Query: 262 VILAIIL 268
           +++ + L
Sbjct: 270 LLILVTL 276


>2onk_C Molybdate/tungstate ABC transporter, permease protein;
           membrane protein; 3.10A {Archaeoglobus fulgidus}
           (C:69-249)
          Length = 181

 Score = 62.3 bits (151), Expect = 7e-11
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 15/171 (8%)

Query: 88  GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIP 146
             W+    T    L+ST I++  G PL  + A       S++   +D    IP  V  I 
Sbjct: 1   AVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIA 60

Query: 147 ALVLFG--------------LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAF 192
            LV+FG                +   +VA +  S+P  +   + G  S    L+  A   
Sbjct: 61  LLVVFGSSGLIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTL 120

Query: 193 GATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVL 243
           G++P +VF  V LP ++  IVA    +    +S      ++    +  P L
Sbjct: 121 GSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTL 171


>2r6g_G Maltose transport system permease protein MALG; ABC
           transporter, catalytic intermediate, E. coli maltose
           transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli
           K12} (G:73-244)
          Length = 172

 Score = 62.2 bits (151), Expect = 8e-11
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 11/160 (6%)

Query: 88  GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIP 146
                   ++ +  +S    + +        A       + +   +   Q  P  + L+ 
Sbjct: 8   PVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVA 67

Query: 147 ALVLFG----------LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATP 196
              LF           L    G++   +  I   V   +    +    L+EAA   GATP
Sbjct: 68  LYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATP 127

Query: 197 FQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN 236
           +Q FR V LP ++P +      + + +++ V V +L+  +
Sbjct: 128 WQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRD 167


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.331    0.146    0.438 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,056,216
Number of extensions: 86189
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 20
Length of query: 281
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 194
Effective length of database: 2,015,014
Effective search space: 390912716
Effective search space used: 390912716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (24.9 bits)