RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] (281 letters) >3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (A:) Length = 217 Score = 66.5 bits (162), Expect = 4e-12 Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 15/201 (7%) Query: 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWY--------PRFYSIIRLFLDSMQTIPT 140 + ETL++ VS F IG+P+GVL + Y + ++ ++IP Sbjct: 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPF 68 Query: 141 FVYLI------PALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGA 194 + L+ +V +G+ IV V + P R+ ++ P L EA+ A GA Sbjct: 69 IILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 128 Query: 195 TPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG-VPVLRALNTVDIGR 253 TP Q+ RKV LP A+P +V + T T++ + + VG+ GLG + + Sbjct: 129 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATV 188 Query: 254 GFESGLCIVILAIILDRLFSI 274 + +VIL ++ Sbjct: 189 MNTVLVLLVILVYLIQFAGDR 209 >2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:269-326,F:360-453) Length = 152 Score = 65.6 bits (160), Expect = 8e-12 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 7/151 (4%) Query: 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPAL 148 + T+ L++ F+++ +G+ L L W + + +P Sbjct: 9 FLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALR---GKAVYRVLLILP----YAAWF 61 Query: 149 VLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFA 208 I+ P + L + + P L EA+ GA PFQ F K+ LP Sbjct: 62 SDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLL 121 Query: 209 IPQIVASLTQTIMLSLSMVVVTALVGSNGLG 239 I + + + + + V+ L+ + G Sbjct: 122 IKPLTPLMIASFAFNFNNFVLIQLLTNGGPD 152 >3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} (C:) Length = 295 Score = 65.2 bits (158), Expect = 1e-11 Identities = 42/247 (17%), Positives = 86/247 (34%), Gaps = 17/247 (6%) Query: 39 KAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLS 98 K + L+ + + L L I + + + +L Sbjct: 30 KTRKFEPLTFVFSFLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFLSLY 89 Query: 99 LVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVP 157 ++T +++ +G P G + A + ++ +D +P V I L +FG + Sbjct: 90 AGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLI 149 Query: 158 G----------------IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFR 201 G +VA + S+P R G S P L+ AA + GA ++ F Sbjct: 150 GEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFF 209 Query: 202 KVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCI 261 V LP + ++ T ++S ++ + P L + G + + Sbjct: 210 FVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAV 269 Query: 262 VILAIIL 268 +++ + L Sbjct: 270 LLILVTL 276 >2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} (C:69-249) Length = 181 Score = 62.3 bits (151), Expect = 7e-11 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 15/171 (8%) Query: 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIP 146 W+ T L+ST I++ G PL + A S++ +D IP V I Sbjct: 1 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIA 60 Query: 147 ALVLFG--------------LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAF 192 LV+FG + +VA + S+P + + G S L+ A Sbjct: 61 LLVVFGSSGLIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTL 120 Query: 193 GATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVL 243 G++P +VF V LP ++ IVA + +S ++ + P L Sbjct: 121 GSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTL 171 >2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:73-244) Length = 172 Score = 62.2 bits (151), Expect = 8e-11 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 11/160 (6%) Query: 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIP 146 ++ + +S + + A + + + Q P + L+ Sbjct: 8 PVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVA 67 Query: 147 ALVLFG----------LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATP 196 LF L G++ + I V + + L+EAA GATP Sbjct: 68 LYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATP 127 Query: 197 FQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN 236 +Q FR V LP ++P + + + +++ V V +L+ + Sbjct: 128 WQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRD 167 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.331 0.146 0.438 Gapped Lambda K H 0.267 0.0577 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,056,216 Number of extensions: 86189 Number of successful extensions: 250 Number of sequences better than 10.0: 1 Number of HSP's gapped: 238 Number of HSP's successfully gapped: 20 Length of query: 281 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 194 Effective length of database: 2,015,014 Effective search space: 390912716 Effective search space used: 390912716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 54 (24.9 bits)