RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC
transporter, permease protein [Candidatus Liberibacter asiaticus str.
psy62]
         (281 letters)



>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease
           protein MetI {Escherichia coli [TaxId: 562]}
          Length = 203

 Score = 55.5 bits (133), Expect = 5e-09
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 17/192 (8%)

Query: 95  ETLSLVLVSTFISMFIGVPLGVLAAWY--------PRFYSIIRLFLDSMQTIPTFVYL-- 144
           ETL++  VS F    IG+P+GVL             + Y  +   ++  ++IP  + L  
Sbjct: 10  ETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVW 69

Query: 145 ----IPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVF 200
                  +V   +G+   IV   V + P   R+    ++  P  L EA+ A GATP Q+ 
Sbjct: 70  MIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIV 129

Query: 201 RKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLC 260
           RKV LP A+P +V + T T++  +    +   VG+ GLG    +       G        
Sbjct: 130 RKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYI---GYNATVMNT 186

Query: 261 IVILAIILDRLF 272
           +++L +IL  L 
Sbjct: 187 VLVLLVILVYLI 198


>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter,
           permease protein {Methanosarcina acetivorans [TaxId:
           2214]}
          Length = 248

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 35/240 (14%), Positives = 79/240 (32%), Gaps = 17/240 (7%)

Query: 46  FVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTF 105
               +   L+ + +   L L       I    +  +     +        +L    ++T 
Sbjct: 2   LTFVFSFLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFLSLYAGFLATL 61

Query: 106 ISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFG------------- 152
           +++ +G P G + A +      +   +  +  +        AL+                
Sbjct: 62  LALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLESY 121

Query: 153 ----LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFA 208
                 +   +VA +  S+P      R G  S  P L+ AA + GA  ++ F  V LP +
Sbjct: 122 IQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLS 181

Query: 209 IPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILAIIL 268
              ++     T   ++S      ++    +  P L     +  G      + ++++ + L
Sbjct: 182 ARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTL 241


>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus
           thermophilus [TaxId: 274]}
          Length = 175

 Score = 25.6 bits (55), Expect = 4.5
 Identities = 12/43 (27%), Positives = 15/43 (34%)

Query: 87  QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIR 129
                E    L LV+V        G  LG    +Y RF   +R
Sbjct: 93  PTTPPEDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRFLKEVR 135


>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease
           protein MalF {Escherichia coli [TaxId: 562]}
          Length = 244

 Score = 24.9 bits (53), Expect = 7.7
 Identities = 33/179 (18%), Positives = 64/179 (35%), Gaps = 30/179 (16%)

Query: 89  YWQETTETLSLVLVSTFISMFIGVPLGVLAAWY-----PRFYSIIRLFLDSMQTIPTFVY 143
             +         +V + I++F+ V +G++ A        R  ++ R+ L     +P+F+ 
Sbjct: 13  IQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFIS 72

Query: 144 LIPALVLF-------------------------GLGMVPGIVATIVFSIPTSVRLTRLGI 178
           ++    LF                                I+       P  + L    +
Sbjct: 73  ILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLL 132

Query: 179 ISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNG 237
            + P  L EA+   GA PFQ F K+ LP  I  +   +  +   + +  V+  L+ + G
Sbjct: 133 KAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGG 191


>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase
           (hydroxymethylbilane synthase), N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 217

 Score = 25.0 bits (54), Expect = 8.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 20  VCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVV 60
           +    NGE+   IL+   LK + L   +   LPP + +  V
Sbjct: 154 LSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAV 194


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.146    0.438 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,017,205
Number of extensions: 44752
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 25
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.0 bits)