BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC
transporter, permease protein [Candidatus Liberibacter asiaticus str.
psy62]
(281 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 281
Score = 548 bits (1411), Expect = e-158, Method: Compositional matrix adjust.
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MSPIIQAPIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVV 60
MSPIIQAPIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVV
Sbjct: 1 MSPIIQAPIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVV 60
Query: 61 SLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW 120
SLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW
Sbjct: 61 SLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW 120
Query: 121 YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIIS 180
YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIIS
Sbjct: 121 YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIIS 180
Query: 181 TPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGV 240
TPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGV
Sbjct: 181 TPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGV 240
Query: 241 PVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDRI 281
PVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDRI
Sbjct: 241 PVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDRI 281
>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 32/159 (20%)
Query: 105 FISMFIGVPLGVLAAWY------PRFYSIIRLFLDSMQTIPTFVYLIPALVLFG------ 152
FI+M VP+G+L A Y + ++I+ + + IPT VY AL L G
Sbjct: 265 FIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDI 324
Query: 153 ----LGMVPGIVATIVFS--------------IPTSVRLTRLGIISTPPILKEAACAFGA 194
G++ G + + + IP L+ I S P L++ + GA
Sbjct: 325 SIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGA 384
Query: 195 TPFQVFRKVELPFAIPQIVAS--LTQTIMLSLSMVVVTA 231
T + + V P A P I + +T + + +M+VV A
Sbjct: 385 TRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLA 423
>gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus
Liberibacter asiaticus str. psy62]
Length = 425
Score = 33.5 bits (75), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 113 PLGVLAAWYPR-------FYSIIRLFLDSMQTIPTFVY-LIPALVLFGLGMVPGIVATI- 163
PLG+ +A Y F S ++ ++++ ++P+ VY ++ + VL +P A +
Sbjct: 223 PLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVG 282
Query: 164 -----VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQ-VFRKVELPFAIPQIVASLT 217
+ ++P+ + T + + + P ++ AA GA+ Q VF V LP A+P I+ T
Sbjct: 283 GLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHV-LPLAMPAILTGST 341
Query: 218 QTIMLSL 224
++ +L
Sbjct: 342 VSLARAL 348
>gi|255764497|ref|YP_003065010.2| ABC transporter permease [Candidatus Liberibacter asiaticus str.
psy62]
Length = 587
Score = 32.7 bits (73), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 91 QETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVL 150
Q + T +L + IS+ LAA R ++ LD MQ+IP +L +V
Sbjct: 63 QYASRTTLRMLSAMVISLLFTFVYATLAAKSRRLGMVLVPILDIMQSIPILGFLTFTVVY 122
Query: 151 FGLGMVPGIVA----TIVFSIPTSVRLT-----RLGIISTPPILKEAACAFGATPFQVFR 201
F + + PG V +F+I TS + + P L+E + +F + +Q F
Sbjct: 123 F-MNLYPGKVIGAELAAIFAIFTSQVWNMTFSMYQSLCNIPRDLEEVSRSFRLSGWQKFW 181
Query: 202 KVELPFAIPQIVASLTQTIMLSLSMVVVTALV 233
+ +PF++P +V ++ ++ VV + ++
Sbjct: 182 YLGVPFSMPGLVWNMMMSMSGGWFFVVASEMI 213
>gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 398
Score = 29.3 bits (64), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW-YPRFYSIIRL----FLDSMQTIP 139
+ + + ++T + L L+ +STF + G+P VL A Y + L F+ P
Sbjct: 207 LSRHFHEKTGKALPLLYISTF--LIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSP 264
Query: 140 TFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQV 199
F+ L AL + + IV R G+I+ P EAA A G T +
Sbjct: 265 EFMSLYIALSCYTAAFIAEIV--------------RSGLIAVPRGQMEAAIALGLTHRKA 310
Query: 200 FRKVELPFAIPQIVASLTQ 218
R V LP A+ I+ LT
Sbjct: 311 TRLVLLPQAMRSIIPPLTS 329
>gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
Length = 160
Score = 27.7 bits (60), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSM 135
++++ Q E LS + + IG+PL + + PR +S R F+ +M
Sbjct: 47 LVRKKVTQTALELLSFITTENIAAFIIGLPLNMNGSEGPRVHS-TRAFVHNM 97
>gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus
Liberibacter asiaticus str. psy62]
Length = 493
Score = 25.0 bits (53), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 168 PTSVRLTRLGIISTPPILKEAA 189
PT R +RLGIIS P L +A
Sbjct: 198 PTYGRCSRLGIISFAPSLDQAG 219
>gi|254780959|ref|YP_003065372.1| putative hydrolase serine protease transmembrane protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 302
Score = 23.9 bits (50), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 124 FYSIIRLFLDSMQTIPTFVYLIPALVLF 151
FY +R + DS+ + TF+ L P F
Sbjct: 258 FYRSMRAYTDSLASSDTFLVLSPDSDFF 285
>gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 23.1 bits (48), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 198 QVFRKVELPFAIPQIVASLTQTIMLS 223
Q +RK ++P IP I+A + M S
Sbjct: 357 QSYRKADVPSGIPPIIAQRALSSMPS 382
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.331 0.146 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,859
Number of Sequences: 1233
Number of extensions: 6385
Number of successful extensions: 36
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 17
length of query: 281
length of database: 328,796
effective HSP length: 73
effective length of query: 208
effective length of database: 238,787
effective search space: 49667696
effective search space used: 49667696
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 38 (19.2 bits)