HHsearch alignment for GI: 254780342 and conserved domain: COG1464
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].
Probab=98.23 E-value=1.8e-05 Score=55.39 Aligned_cols=228 Identities=18% Similarity=0.140 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCC---CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCC
Q ss_conf 957999999999998630358345---88379942588699999999999996106984899856-40578888514981
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDADS---CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGI 76 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~~---~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~i 76 (309)
T Consensus 1 m~~~~~~~~~~~~~l~~~~~~~~~~~~~~~I~vg~~~~p~a~ile~~~k~~~~k~-Gi~l~i~~FtDY~~PN~AL~~gdi 79 (268)
T COG1464 1 MKKLKKLALALVALLALAACGAAAAKATKTIKVGATPGPHAEILEVVVKPALKKK-GLDLKIVEFTDYVQPNEALADGDI 79 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEEECCCCCHHHHHHCCCC
T ss_conf 9438899999999999975223113457717996368965999999987788855-965999981487665578766884
Q ss_pred EEEEEEECCCCHHHHHHHHHC--CCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCC--CCCCCC
Q ss_conf 399984046413566665530--4702301356685356786344641234553565555665442013578--543200
Q gi|254780342|r 77 DIFMGYWYPSLEKFIAPYLEE--GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE--PGNEGN 152 (309)
Q Consensus 77 D~~~e~w~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~--~~~~~~ 152 (309)
T Consensus 80 DaN~FQH~p----yL~~~~k~~~~~Lv~vg~~~i~Pm-g~Y------Skk~ksl~el~~G------atIaiPNDpsN~gR 142 (268)
T COG1464 80 DANAFQHKP----YLDQFNKEHGGKLVAVGNTHIEPM-GLY------SKKYKSLAELKDG------ATIAIPNDPTNEGR 142 (268)
T ss_pred CCHHHHCHH----HHHHHHHHCCCCEEEEEEEEECCC-EEC------CHHCCCHHHCCCC------CEEECCCCCCCHHH
T ss_conf 600121468----899999973997898755776142-501------2200868467999------98988789873567
Q ss_pred H-------------------HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHH-----HCCC
Q ss_conf 5-------------------558766403545221001036652018999999965993699941242232-----0158
Q gi|254780342|r 153 Q-------------------RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN-----SDLN 208 (309)
Q Consensus 153 ~-------------------~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~-----~~~d 208 (309)
T Consensus 143 AL~lL~~aGLIkLk~~~~~~aT~~DI~eNPK~lki~EldA-------aqlpRaLddvD~AvI---N~nyA~~AgL~p~kd 212 (268)
T COG1464 143 ALLLLQKAGLIKLKDGVNLLATPKDITENPKNLKIKELEA-------AQLPRALDDVDAAVI---NTNYALQAGLNPKKD 212 (268)
T ss_pred HHHHHHHCCCEEECCCCCCCCCHHHHHHCCCCCEEEECCH-------HHCCCCCCCCCEEEE---CCHHHHHCCCCCCCC
T ss_conf 9999998796797688765588878861944575687056-------756532035677987---430797759991204
Q ss_pred CEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 514007865467786583544277778748899999874089989999999999
Q gi|254780342|r 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262 (309)
Q Consensus 209 l~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~~v 262 (309)
T Consensus 213 ai~~e~~-~~---spY~Niivvr~-~d~d~~~ik~lv~a~q-s~evk~~i~k~y 260 (268)
T COG1464 213 ALFEEDK-DS---SPYVNIIVVRE-EDKDDPAVKKLVEAYQ-SDEVKAFIEKKY 260 (268)
T ss_pred CEECCCC-CC---CCCEEEEEECC-CCCCCHHHHHHHHHHC-CHHHHHHHHHHH
T ss_conf 2141466-67---86247999715-5668889999999974-999999999972