HHsearch alignment for GI: 254780342 and conserved domain: COG4134
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only].
Probab=95.88 E-value=0.16 Score=29.76 Aligned_cols=246 Identities=12% Similarity=0.085 Sum_probs=114.8
Q ss_pred CCCCEEEECCCCCHHHHHHHHH---HHHHHHCCCCEEEEEECC---HH-HHHHHHHC-----CCCEEEEEEE--CCCCH-
Q ss_conf 5883799425886999999999---999961069848998564---05-78888514-----9813999840--46413-
Q gi|254780342|r 24 SCTPVRFADTGWTDIAATTAMT---SVILEEILGYKTNIKLLA---VP-VTFRSLKN-----KGIDIFMGYW--YPSLE- 88 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~v~a~i~---~~iLE~~lGy~Ve~~~~~---~~-~~~~al~~-----G~iD~~~e~w--~p~~~- 88 (309)
T Consensus 32 ~~q~vy--fnawgg~~~~ns~~~W~~~~~~~kYgi~v~~~~l~~~~a~~~~~a~~AAG~~e~g~VDl~~~~g~n~p~lk~ 109 (384)
T COG4134 32 KGQTVY--FNAWGGSTAINSYADWVSDEMKAKYGIKVAIVRLDAADAVKRLIAELAAGRDEGGSVDLLWINGENFPTLKE 109 (384)
T ss_pred CCCCEE--EEEECCCCCHHCCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHH
T ss_conf 577369--985056310000265322023200251787512418888888999986425568726899835754133431
Q ss_pred --HHH----------HH---HHHC----CCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCC-CCC
Q ss_conf --566----------66---5530----470230135668535678634464123455356555566544201357-854
Q gi|254780342|r 89 --KFI----------AP---YLEE----GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI-EPG 148 (309)
Q Consensus 89 --~~~----------~~---~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~-~~~ 148 (309)
T Consensus 110 ~~~Ly~~~~~~LPnwr~~d~ql~~tdf~~pt~Gl~~~~~~~q~~f~yd~~k~~~~P~s~eeLL~wA~aNP~rf~Y~~P~~ 189 (384)
T COG4134 110 AGLLYTPWAEDLPNWRYVDHQLPRTDFSVPTEGLESPWGGNQLVFIYDRDKVPQVPQSFEELLVWAKANPKRFGYPRPPN 189 (384)
T ss_pred CCCCCCCHHHHCCCCHHHCHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 66202512321866012030035332578877621440277523887234478877399999999985967535689998
Q ss_pred -CCCCHHHHHHHHH--------------------------CCCCCCC-EEEECCCCCCHHHHHHHHHHCCCCEEEEEECC
Q ss_conf -3200555876640--------------------------3545221-00103665201899999996599369994124
Q gi|254780342|r 149 -NEGNQRILDMINN--------------------------NKFSLKG-FRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200 (309)
Q Consensus 149 -~~~~~~~~~~~~~--------------------------~~l~~~~-~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp 200 (309)
T Consensus 190 gg~G~~Fl~~~~i~Lt~d~~~l~~avDpat~~k~~~p~WqYl~~Lh~~i~r~~kg~Adml----~lL~dG~L~l~~t~-~ 264 (384)
T COG4134 190 GGTGTAFLKQLLIMLTGDAAALQQAVDPATFAKVWAPLWQYLDELHPYIWRTGKGPADML----QLLNDGTLYLTLTF-P 264 (384)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHH----HHHCCCCEEEEECC-H
T ss_conf 886076999889985485576507888077776210899999986155601389878999----87417847886046-0
Q ss_pred CHHHHCCCCEEECCCCCCCCCC---HHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHH-HHHHHHHHHCC-----CCHHH
Q ss_conf 2232015851400786546778---658354427777874889999987408998999-99999998459-----99899
Q gi|254780342|r 201 HPINSDLNIHYLPGGEEISGFG---EASVYTVVRSDYLDKCPNISRLLKNIKFSVALE-NEMMKLILNNK-----QDRQF 271 (309)
Q Consensus 201 ~~~~~~~dl~~Ledp~~~~~~p---~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~-~~l~~~v~~~g-----~~~~~ 271 (309)
T Consensus 265 ~~~~s~~~tG~lp~s~~~~~~~~G~vgn~~f~aIP-aNa~~~A~alvl~n~lls~EaQlrk~d~~v~~~P~~l~pq~lpd 343 (384)
T COG4134 265 DHASSAIATGDLPASARSFALEKGMVGNGHFMAIP-ANANAKAAALVLANFLLSPEAQLRKLDPAVWGDPSVLDPQLLPD 343 (384)
T ss_pred HHHHCCHHCCCCCHHHHHHHHCCCCCCCCCEEEEC-CCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 66403022167866766421016653675169822-79997069999998863988887651520148964258001746
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780342|r 272 VGRTML 277 (309)
Q Consensus 272 vA~~wL 277 (309)
T Consensus 344 a~qe~~ 349 (384)
T COG4134 344 AQQEFL 349 (384)
T ss_pred HHHHHH
T ss_conf 675543