HHsearch alignment for GI: 254780342 and conserved domain: COG4143
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism].
Probab=98.14 E-value=0.00012 Score=49.92 Aligned_cols=240 Identities=13% Similarity=0.077 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHHHCCCCEEEEEE-CCHHHHHHHH-HCC---
Q ss_conf 95799999999999863035834588379942-58869999999999999610698489985-6405788885-149---
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD-TGWTDIAATTAMTSVILEEILGYKTNIKL-LAVPVTFRSL-KNK--- 74 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~~~~~I~ig~-~~wte~~v~a~i~~~iLE~~lGy~Ve~~~-~~~~~~~~al-~~G--- 74 (309)
T Consensus 1 m~~~l~~~~~~all~~~~~~a~~~t~~LtVytydSF~~ewg~Gp~vk~~FE~~~~~~v~fV~~~d~v~llnRl~leg~~~ 80 (336)
T COG4143 1 MRRLLRALIGLALLVSAALGAQAATPTLTVYTYDSFASEWGPGPKVKKAFEAEYGCKVNFVALGDGVELLNRLILEGKNP 80 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 90249999999999998657763485389999763422568857899999998595289997075899999999707898
Q ss_pred CCEEEEEEECCCCHHHHHHHHHCCCEE-----------------EEC-CCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHH
Q ss_conf 813999840464135666655304702-----------------301-35668535678634464123455356555566
Q gi|254780342|r 75 GIDIFMGYWYPSLEKFIAPYLEEGSIK-----------------LVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136 (309)
Q Consensus 75 ~iD~~~e~w~p~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~ 136 (309)
T Consensus 81 ~ADvvvGld--n--~~l~~A~~~~lf~~~~~d~~~~~vp~~~~~d~f~~P~DyGy~a~vYd~~~~~~ppksL~dL~~~~y 156 (336)
T COG4143 81 KADVVVGLD--N--NLLARARETGLFAPYGVDASDVPVPEGWKIDTFALPYDYGYFAFVYDKTKLKNPPKSLKDLVEPEY 156 (336)
T ss_pred CCCEEEECC--H--HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHCCCCCCHHHHCCCCC
T ss_conf 885899347--2--778888855876667898557888765356751012454128999765775287626898638512
Q ss_pred HHHHCCCCCCCCCCCCHH--HHHHHHHC----------CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 544201357854320055--58766403----------545221001036652018999999965993699941242232
Q gi|254780342|r 137 ELGAKIYGIEPGNEGNQR--ILDMINNN----------KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204 (309)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~--~~~~~~~~----------~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~ 204 (309)
T Consensus 157 ~--~~ii~qdPrtSspGl~fLlW~~svyg~d~~~~~W~kL~~~~v~v~~-----gWSeaY~aFt~GEap~VLSYtTspay 229 (336)
T COG4143 157 A--GKIIYQDPRTSSPGLGFLLWTISVYGEDGAPEAWAKLADNGVTVTK-----GWSEAYGAFTKGEAPLVLSYTTSPAY 229 (336)
T ss_pred C--CCEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCEEECC-----CHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 6--9578069887884078899998763623189999999858868658-----67988988747865579986068221
Q ss_pred HCCCCE-----EECCCCCCCCCCHHHHHHHHCHHHH-HHCHHHHHHHHHCCCCHHHHHH
Q ss_conf 015851-----4007865467786583544277778-7488999998740899899999
Q gi|254780342|r 205 SDLNIH-----YLPGGEEISGFGEASVYTVVRSDYL-DKCPNISRLLKNIKFSVALENE 257 (309)
Q Consensus 205 ~~~dl~-----~Ledp~~~~~~p~~~~~~vv~~~~~-~~~P~~~~~L~~~~ls~~~~~~ 257 (309)
T Consensus 230 ~~~~~~~~~~~a~~f~eG~ylqiEg----aa--~~k~~knp~LA~~F~~FmlS~e~Q~~ 282 (336)
T COG4143 230 HVYPEKKDRYAAALFPEGHYLQVEG----AA--VLKGAKNPELADKFLQFMLSPEFQDA 282 (336)
T ss_pred HCCCCCCCCCCHHCCCCCCEEEEEE----EE--ECCCCCCHHHHHHHHHHHHCHHHHHH
T ss_conf 0253200221001178885367766----53--11279987999999999709877840