HHsearch alignment for GI: 254780342 and conserved domain: PRK09501
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed.
Probab=98.13 E-value=0.00017 Score=49.09 Aligned_cols=256 Identities=11% Similarity=0.078 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCC-CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHC---CC
Q ss_conf 9579999999999986303583-4588379942588699999999999996106984899856405-78888514---98
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP-VTFRSLKN---KG 75 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~-~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~-~~~~al~~---G~ 75 (309)
T Consensus 1 ~~~~~~~ll~~~a~~l~~~~~~a~~~~~L~i--~~W-~~Yi~~~~i~~F-e~etGikV~~~~~~s~ee~~akL~a~~~~~ 76 (348)
T PRK09501 1 MKKWSRHLLAAGALALGMSAAHADDNNTLYF--YNW-TEYVPPGLLEQF-TKETGIKVIYSTYESNETMYAKLKTYKDGA 76 (348)
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHCCCCEEEE--ECC-CCCCCHHHHHHH-HHHHCCEEEEEECCCHHHHHHHHHCCCCCC
T ss_conf 9368999999999997350335433897999--871-001897899999-999898899995499999999997179998
Q ss_pred CEEEEEEE-------------------CCCCHHHHHHHHHCCCE---EEECCCCCCCEEEEEEEHHHHH-CCCCCHHHHH
Q ss_conf 13999840-------------------46413566665530470---2301356685356786344641-2345535655
Q gi|254780342|r 76 IDIFMGYW-------------------YPSLEKFIAPYLEEGSI---KLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIA 132 (309)
Q Consensus 76 iD~~~e~w-------------------~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~-~~i~~~~dl~ 132 (309)
T Consensus 77 yDvv~ps~~~v~~l~~~gll~~LD~s~ipN~~nl-~p~~~~~~~dp~~~y~vPy~wGt~Gi~yn~d~v~~~~~~SW~dL~ 155 (348)
T PRK09501 77 YDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNL-DPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLW 155 (348)
T ss_pred CEEEEECHHHHHHHHHCCCCCCCCHHHCCCHHHC-CHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHC
T ss_conf 2899979689999997798454784228481226-976744774899848988997511599850114788888789854
Q ss_pred HHHHHHHHCCCCCC----------------CCCCCCHHHHHHHHH-CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 55665442013578----------------543200555876640-3545221001036652018999999965993699
Q gi|254780342|r 133 KYKKELGAKIYGIE----------------PGNEGNQRILDMINN-NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195 (309)
Q Consensus 133 ~~~~~~~~~~~g~~----------------~~~~~~~~~~~~~~~-~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~ 195 (309)
T Consensus 156 dp~--~kGki~~~d~~~~~~~~al~~lG~~~n~~d~~~l~~a~~~L~~~~~~i~~~--~sd-----~~~~~l~~Gev~ia 226 (348)
T PRK09501 156 KPE--YKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAF--NSD-----NPANPYMEGEVNLG 226 (348)
T ss_pred CHH--HCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEE--ECC-----CHHHHHHCCCCEEE
T ss_conf 966--479079716678999999998279988899999999999999851105898--177-----05469873883299
Q ss_pred EEECCCHHHHCCCCEEEC--CCC-CCCCCCHHHHHHHHCHHHHHHCHH-HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf 941242232015851400--786-546778658354427777874889-9999874089989999999999845999899
Q gi|254780342|r 196 LSWEPHPINSDLNIHYLP--GGE-EISGFGEASVYTVVRSDYLDKCPN-ISRLLKNIKFSVALENEMMKLILNNKQDRQF 271 (309)
Q Consensus 196 ~~wsp~~~~~~~dl~~Le--dp~-~~~~~p~~~~~~vv~~~~~~~~P~-~~~~L~~~~ls~~~~~~l~~~v~~~g~~~~~ 271 (309)
T Consensus 227 ~~wsgda~~~~~~~~~i~~v~PkEG~~~w--~D~~~Ipk---~A~n~e~A~~FInf-~l~Pevaa~~a~~~~--y~t~n~ 298 (348)
T PRK09501 227 MIWNGSAFVARQAGTPIDVVWPKEGGIFW--MDSLAIPA---NAKNKEGALKLINF-LLRPDVAKQVAETIG--YPTPNL 298 (348)
T ss_pred EEECHHHHHHHHCCCCCCEEECCCCCEEE--EEEEEEEC---CCCCHHHHHHHHHH-HHCHHHHHHHHHHHC--CCCHHH
T ss_conf 87405899999708997189757886699--89988989---99898999999998-619799999999748--898308
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780342|r 272 VGRTMLR 278 (309)
Q Consensus 272 vA~~wL~ 278 (309)
T Consensus 299 ~A~~~l~ 305 (348)
T PRK09501 299 AARKLLS 305 (348)
T ss_pred HHHHHCC
T ss_conf 8886189