HHsearch alignment for GI: 254780342 and conserved domain: PRK09501

>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed.
Probab=98.13  E-value=0.00017  Score=49.09  Aligned_cols=256  Identities=11%  Similarity=0.078  Sum_probs=120.9

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCC-CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHC---CC
Q ss_conf             9579999999999986303583-4588379942588699999999999996106984899856405-78888514---98
Q gi|254780342|r    1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP-VTFRSLKN---KG   75 (309)
Q Consensus         1 mkk~~~~~~~~~~~~~~~~~~~-~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~-~~~~al~~---G~   75 (309)
T Consensus         1 ~~~~~~~ll~~~a~~l~~~~~~a~~~~~L~i--~~W-~~Yi~~~~i~~F-e~etGikV~~~~~~s~ee~~akL~a~~~~~   76 (348)
T PRK09501          1 MKKWSRHLLAAGALALGMSAAHADDNNTLYF--YNW-TEYVPPGLLEQF-TKETGIKVIYSTYESNETMYAKLKTYKDGA   76 (348)
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHCCCCEEEE--ECC-CCCCCHHHHHHH-HHHHCCEEEEEECCCHHHHHHHHHCCCCCC
T ss_conf             9368999999999997350335433897999--871-001897899999-999898899995499999999997179998


Q ss_pred             CEEEEEEE-------------------CCCCHHHHHHHHHCCCE---EEECCCCCCCEEEEEEEHHHHH-CCCCCHHHHH
Q ss_conf             13999840-------------------46413566665530470---2301356685356786344641-2345535655
Q gi|254780342|r   76 IDIFMGYW-------------------YPSLEKFIAPYLEEGSI---KLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIA  132 (309)
Q Consensus        76 iD~~~e~w-------------------~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~-~~i~~~~dl~  132 (309)
T Consensus        77 yDvv~ps~~~v~~l~~~gll~~LD~s~ipN~~nl-~p~~~~~~~dp~~~y~vPy~wGt~Gi~yn~d~v~~~~~~SW~dL~  155 (348)
T PRK09501         77 YDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNL-DPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLW  155 (348)
T ss_pred             CEEEEECHHHHHHHHHCCCCCCCCHHHCCCHHHC-CHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHC
T ss_conf             2899979689999997798454784228481226-976744774899848988997511599850114788888789854


Q ss_pred             HHHHHHHHCCCCCC----------------CCCCCCHHHHHHHHH-CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             55665442013578----------------543200555876640-3545221001036652018999999965993699
Q gi|254780342|r  133 KYKKELGAKIYGIE----------------PGNEGNQRILDMINN-NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF  195 (309)
Q Consensus       133 ~~~~~~~~~~~g~~----------------~~~~~~~~~~~~~~~-~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~  195 (309)
T Consensus       156 dp~--~kGki~~~d~~~~~~~~al~~lG~~~n~~d~~~l~~a~~~L~~~~~~i~~~--~sd-----~~~~~l~~Gev~ia  226 (348)
T PRK09501        156 KPE--YKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAF--NSD-----NPANPYMEGEVNLG  226 (348)
T ss_pred             CHH--HCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEE--ECC-----CHHHHHHCCCCEEE
T ss_conf             966--479079716678999999998279988899999999999999851105898--177-----05469873883299


Q ss_pred             EEECCCHHHHCCCCEEEC--CCC-CCCCCCHHHHHHHHCHHHHHHCHH-HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf             941242232015851400--786-546778658354427777874889-9999874089989999999999845999899
Q gi|254780342|r  196 LSWEPHPINSDLNIHYLP--GGE-EISGFGEASVYTVVRSDYLDKCPN-ISRLLKNIKFSVALENEMMKLILNNKQDRQF  271 (309)
Q Consensus       196 ~~wsp~~~~~~~dl~~Le--dp~-~~~~~p~~~~~~vv~~~~~~~~P~-~~~~L~~~~ls~~~~~~l~~~v~~~g~~~~~  271 (309)
T Consensus       227 ~~wsgda~~~~~~~~~i~~v~PkEG~~~w--~D~~~Ipk---~A~n~e~A~~FInf-~l~Pevaa~~a~~~~--y~t~n~  298 (348)
T PRK09501        227 MIWNGSAFVARQAGTPIDVVWPKEGGIFW--MDSLAIPA---NAKNKEGALKLINF-LLRPDVAKQVAETIG--YPTPNL  298 (348)
T ss_pred             EEECHHHHHHHHCCCCCCEEECCCCCEEE--EEEEEEEC---CCCCHHHHHHHHHH-HHCHHHHHHHHHHHC--CCCHHH
T ss_conf             87405899999708997189757886699--89988989---99898999999998-619799999999748--898308


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780342|r  272 VGRTMLR  278 (309)
Q Consensus       272 vA~~wL~  278 (309)
T Consensus       299 ~A~~~l~  305 (348)
T PRK09501        299 AARKLLS  305 (348)
T ss_pred             HHHHHCC
T ss_conf             8886189