HHsearch alignment for GI: 254780342 and conserved domain: PRK10341
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional.
Probab=93.24 E-value=0.69 Score=25.56 Aligned_cols=198 Identities=11% Similarity=0.098 Sum_probs=103.1
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
T Consensus 94 ~~~~~l~ig~~~~~~~~~lp~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~D~~i~~~~~~~~-------~~-~~~~ 165 (312)
T PRK10341 94 EAVVDVSFGFPSLIGFTFMSDMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSNEMK-------LQ-DLHV 165 (312)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEECCCCCC-------CC-CEEE
T ss_conf 873257435406889999999999999988897799998999999999966986199974368777-------78-7499
Q ss_pred ECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHH
Q ss_conf 01356685356786344641234553565555665442013578543200555876640354522100103665201899
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~ 182 (309)
T Consensus 166 -~~l~-~~~~~lv~~~~~p~~~~~~l~~L~~~------~~il~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~s----~~~ 232 (312)
T PRK10341 166 -EPLF-ESEFVLVASKSRTCTGTTTLESLKNE------QWVLPQTNMGYYSELLTTLQRNGISIEN-IVKTDS----VVT 232 (312)
T ss_pred -EEEE-CCCEEEEECCCCCCCCCCCHHHHCCC------CEEEECCCCCHHHHHHHHHHHCCCCCCC-EEEECH----HHH
T ss_conf -9951-24289997675423489798998079------8686069985899999999976999881-699890----999
Q ss_pred HHHHHHCCCCEEEEEECCCHHH---HCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 9999965993699941242232---01585140078654677865835442777787488999998740
Q gi|254780342|r 183 IRRDQRNNIPAVFLSWEPHPIN---SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 183 l~~A~~~~~~~v~~~wsp~~~~---~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
T Consensus 233 i~~lv~~g~gi~~l---P~~~~~~~~~~~L~~lpl~~~~---~~~~~~lv~~k~-~~ls~a~~~fie~~ 294 (312)
T PRK10341 233 IYNLVLNADFLTVI---PCDMTSPFGSNQFITIPIKETL---PVARYAAVWSKN-YRIKKAASVLVELA 294 (312)
T ss_pred HHHHHHHCCEEEEE---HHHHHHHHCCCCEEEEECCCCC---CEEEEEEEEECC-CCCCHHHHHHHHHH
T ss_conf 99999979958972---6999966318989999899988---511899999893-98899999999999