HHsearch alignment for GI: 254780342 and conserved domain: PRK10341

>PRK10341 DNA-binding transcriptional activator TdcA; Provisional.
Probab=93.24  E-value=0.69  Score=25.56  Aligned_cols=198  Identities=11%  Similarity=0.098  Sum_probs=103.1

Q ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf             45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r   23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL  102 (309)
Q Consensus        23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~  102 (309)
T Consensus        94 ~~~~~l~ig~~~~~~~~~lp~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~D~~i~~~~~~~~-------~~-~~~~  165 (312)
T PRK10341         94 EAVVDVSFGFPSLIGFTFMSDMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSNEMK-------LQ-DLHV  165 (312)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEECCCCCC-------CC-CEEE
T ss_conf             873257435406889999999999999988897799998999999999966986199974368777-------78-7499


Q ss_pred             ECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHH
Q ss_conf             01356685356786344641234553565555665442013578543200555876640354522100103665201899
Q gi|254780342|r  103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~  182 (309)
T Consensus       166 -~~l~-~~~~~lv~~~~~p~~~~~~l~~L~~~------~~il~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~s----~~~  232 (312)
T PRK10341        166 -EPLF-ESEFVLVASKSRTCTGTTTLESLKNE------QWVLPQTNMGYYSELLTTLQRNGISIEN-IVKTDS----VVT  232 (312)
T ss_pred             -EEEE-CCCEEEEECCCCCCCCCCCHHHHCCC------CEEEECCCCCHHHHHHHHHHHCCCCCCC-EEEECH----HHH
T ss_conf             -9951-24289997675423489798998079------8686069985899999999976999881-699890----999


Q ss_pred             HHHHHHCCCCEEEEEECCCHHH---HCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf             9999965993699941242232---01585140078654677865835442777787488999998740
Q gi|254780342|r  183 IRRDQRNNIPAVFLSWEPHPIN---SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI  248 (309)
Q Consensus       183 l~~A~~~~~~~v~~~wsp~~~~---~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~  248 (309)
T Consensus       233 i~~lv~~g~gi~~l---P~~~~~~~~~~~L~~lpl~~~~---~~~~~~lv~~k~-~~ls~a~~~fie~~  294 (312)
T PRK10341        233 IYNLVLNADFLTVI---PCDMTSPFGSNQFITIPIKETL---PVARYAAVWSKN-YRIKKAASVLVELA  294 (312)
T ss_pred             HHHHHHHCCEEEEE---HHHHHHHHCCCCEEEEECCCCC---CEEEEEEEEECC-CCCCHHHHHHHHHH
T ss_conf             99999979958972---6999966318989999899988---511899999893-98899999999999