HHsearch alignment for GI: 254780342 and conserved domain: PRK11063
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional.
Probab=98.64 E-value=2.5e-06 Score=61.00 Aligned_cols=231 Identities=12% Similarity=0.101 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHH-HHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEE
Q ss_conf 957999999999-99863035834588379942588699999999999996106984899856-4057888851498139
Q gi|254780342|r 1 MYKILAVCLFLT-TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDI 78 (309)
Q Consensus 1 mkk~~~~~~~~~-~~~~~~~~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~ 78 (309)
T Consensus 5 ~k~~~~~~~l~~~l~l~gCg~~~~~~~~ikVG~~~gp~~ei~e~~~~~~~ek~-G~~veiv~FsDy~~pN~AL~~G~iDa 83 (271)
T PRK11063 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKEKY-GLDVELVTFNDYVLPNEALSKGDIDA 83 (271)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHCCCCCH
T ss_conf 99999999999999750058985679818998468987999999888888607-97689999368321558986798442
Q ss_pred EEEEECCCCHHHHHHHHHCC--CEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHH---------HHHHH-------
Q ss_conf 99840464135666655304--7023013566853567863446412345535655556---------65442-------
Q gi|254780342|r 79 FMGYWYPSLEKFIAPYLEEG--SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK---------KELGA------- 140 (309)
Q Consensus 79 ~~e~w~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~---------~~~~~------- 140 (309)
T Consensus 84 N~fQ----H~~yL~~~nk~~g~~L~~v~~~~~~-P~glYS------~K~ksl~elp~Ga~IaIPND~sN~~RAL~lL~~a 152 (271)
T PRK11063 84 NAFQ----HKPYLDQQIKDRGYKLVAVGNTFVY-PIAGYS------KKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKV 152 (271)
T ss_pred HHHH----CHHHHHHHHHHCCCCEEEEEEEEEE-EEEEEE------CCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHC
T ss_conf 3455----7999999999779957998667784-158642------3658864756999998048856099999999988
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHH----CCCCEEECCCC
Q ss_conf 01357854320055587664035452210010366520189999999659936999412422320----15851400786
Q gi|254780342|r 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS----DLNIHYLPGGE 216 (309)
Q Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~----~~dl~~Ledp~ 216 (309)
T Consensus 153 GLIkLk~~~~~~~T~~DI~-~Npk~l~---~~e~d----aaql~rsl~D~dv~~aviN~~~a~~agl~p~kdal~~E~~~ 224 (271)
T PRK11063 153 GLIKLKDGVGLLPTVLDIV-ENPKNLK---IVELE----APQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKD 224 (271)
T ss_pred CCEEECCCCCCCCCHHHHH-CCCCCCE---EEECC----HHHHHHHCCCCCEEEEEECHHHHHHCCCCCCCCCEEECCCC
T ss_conf 9889779999878966885-4887748---99903----77644313576510898147789777989342504777899
Q ss_pred CCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 5467786583544277778748899999874089989999999
Q gi|254780342|r 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259 (309)
Q Consensus 217 ~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~ 259 (309)
T Consensus 225 -----~py~Nvivvr~~-~kd~~~ik~lv~~~~--S~evk~~I 259 (271)
T PRK11063 225 -----SPYVNLIVARED-NKDAENVKKFVQAYQ--SDEVYEAA 259 (271)
T ss_pred -----CCEEEEEEECCC-CCCCHHHHHHHHHHC--CHHHHHHH
T ss_conf -----983899998277-779989999999977--99999999