HHsearch alignment for GI: 254780342 and conserved domain: PRK11119
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional.
Probab=100.00 E-value=0 Score=396.42 Aligned_cols=288 Identities=16% Similarity=0.205 Sum_probs=252.0
Q ss_pred HHHHHHHHHHHHHHHHH--CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCCCEE
Q ss_conf 57999999999998630--3583458837994258869999999999999610698489-98564057888851498139
Q gi|254780342|r 2 YKILAVCLFLTTFSISY--ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDI 78 (309)
Q Consensus 2 kk~~~~~~~~~~~~~~~--~~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve-~~~~~~~~~~~al~~G~iD~ 78 (309)
T Consensus 4 ~~~l~~~a~~~~~~~~a~a~~~pg~g~tV~~a~~~W~~~~a~t~v~~~~Le~-lGY~Ve~~~~~~~~~~~~ala~GdiD~ 82 (332)
T PRK11119 4 HKVLLATALATLISTSAFAADLPGKGITVQPAQSTIAEETFQTLLVSRALEK-LGYDVNKPKEVDYNVFYTSIASGDATF 82 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH-CCCCCCCCEECCHHHHHHHHHCCCCEE
T ss_conf 8889999999985227652558999977876016840899999999999998-699854201444688999985588448
Q ss_pred EEEEECCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHC-CCCCHHHHHH--HHHHH------HHCCCCCCCCC
Q ss_conf 998404641356666553047023013566853567863446412-3455356555--56654------42013578543
Q gi|254780342|r 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAK--YKKEL------GAKIYGIEPGN 149 (309)
Q Consensus 79 ~~e~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~i~~~~dl~~--~~~~~------~~~~~g~~~~~ 149 (309)
T Consensus 83 ~~~~WlP~~~~~~~~~~~~~~~~~~g~~~~ga~~G~~V~~~~~d~~~I~si~dLkdp~~a~~Fd~~~~GKg~i~g~~pGw 162 (332)
T PRK11119 83 TAVNWFPLHDDQYEAAGGDKKFYREGVIVGGAAQGYLIDKKTADKYNITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGW 162 (332)
T ss_pred EECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHCHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 65561765179999732776476424335665136895023321148578998628678986076778850288148872
Q ss_pred CCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCC----CCEEECCCCCC-------
Q ss_conf 2005558766403545221001036652018999999965993699941242232015----85140078654-------
Q gi|254780342|r 150 EGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL----NIHYLPGGEEI------- 218 (309)
Q Consensus 150 ~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~----dl~~Ledp~~~------- 218 (309)
T Consensus 163 g~~~~~~~~i~~ygL~~-~~~~~~gs~~am~A~~~~a~~~~epiv~~~W~PHW~~~~~~pg~Dv~~L~~P~~~~~~~~~~ 241 (332)
T PRK11119 163 GCEAVINHQLKAYGLTD-TVTHNQGNYAALMADTIARYKEGKPVLYYTWTPYWVSDVLKPGKDVVWLQVPFSALPGDQKN 241 (332)
T ss_pred CHHHHHHHHHHHCCCCC-EEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 06689999998679965-05463564899999999999879998999967711342025655513512655557755456
Q ss_pred ----------CCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHH
Q ss_conf ----------677865835442777787488999998740899899999999998459998999---9999998599999
Q gi|254780342|r 219 ----------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLLK 285 (309)
Q Consensus 219 ----------~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~~v~~~g~~~~~v---A~~wL~~n~~~~~ 285 (309)
T Consensus 242 ~~~~~~dp~~~g~~~~~i~~v~~k~f~e~~P~a~~~l~n~~~t~~d~~~~~~~i~~~~~~~~d~~~~A~~WI~~N~d~v~ 321 (332)
T PRK11119 242 ADTKLPNGKNYGFPVSTMHIVANKKFAEKNPAAAKLFEIMKLPLADINAQNARMHDGENSEADIQRHVDGWIKAHQAQFD 321 (332)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHH
T ss_conf 43335774103786102775210035563948999999679999999999999981699846699999999997989999
Q ss_pred HHHCCC
Q ss_conf 875475
Q gi|254780342|r 286 NWLIGV 291 (309)
Q Consensus 286 ~Wl~~~ 291 (309)
T Consensus 322 ~WL~~A 327 (332)
T PRK11119 322 GWVKEA 327 (332)
T ss_pred HHHHHH
T ss_conf 999999