HHsearch alignment for GI: 254780342 and conserved domain: PRK11260
>PRK11260 cystine transporter subunit; Provisional.
Probab=97.63 E-value=0.0016 Score=42.74 Aligned_cols=211 Identities=13% Similarity=0.060 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHHHHHC-CCCC--------CCCCEEEECC-CCC-HH------H---HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9579999999999986303-5834--------5883799425-886-99------9---999999999961069848998
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYA-RDAD--------SCTPVRFADT-GWT-DI------A---ATTAMTSVILEEILGYKTNIK 60 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~-~~~~--------~~~~I~ig~~-~wt-e~------~---v~a~i~~~iLE~~lGy~Ve~~ 60 (309)
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~a~~~~L~~I~~~G~L~Vg~~~~~pPf~~~d~~G~~~GfdvDl~~~ia~-~lg~~~e~~ 83 (264)
T PRK11260 5 GRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLLVGLEGTYPPFSFQGEDGKLTGFEVEFAEALAK-HLGVKASLK 83 (264)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEECCCCCEEEEEHHHHHHHHH-HHCCCEEEE
T ss_conf 7999999999999998357654342439999869989999778988936899999988871999999999-849956999
Q ss_pred ECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 56405788885149813999840464135666655304702301356685356786344641234553565555665442
Q gi|254780342|r 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGA 140 (309)
Q Consensus 61 ~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~ 140 (309)
T Consensus 84 ~~~~~~~i~~L~~g~~Di~~~~~-t~T~eR~~-------~~~Fs~PY~~~~~~~~v~~~~-~~~i~~~~dL~-------G 147 (264)
T PRK11260 84 PTKWDGMLASLDSKRIDVVINQV-TISDERKK-------KYDFSTPYTVSGIQALVKKGN-EGTIKTAADLK-------G 147 (264)
T ss_pred ECCHHHHHHHHHCCCCCEEECCC-CCCHHHHH-------HCCCCCCEEEEEEEEEEECCC-CCCCCCHHHHC-------C
T ss_conf 78889999998669946672575-35888885-------177677437744599998789-76668978966-------8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCH--HHHCCC-C-EEECCCC
Q ss_conf 01357854320055587664035452210010366520189999999659936999412422--320158-5-1400786
Q gi|254780342|r 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP--INSDLN-I-HYLPGGE 216 (309)
Q Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~--~~~~~d-l-~~Ledp~ 216 (309)
T Consensus 148 k~V~v~~gs~~~----~~l~~~~~~~~-i~~~~~~-----~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~~~~~~~~~- 216 (264)
T PRK11260 148 KKVGVGLGTNYE----EWLRQNVQGVD-VRTYDDD-----PTKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVTGEA- 216 (264)
T ss_pred CEEEEECCCHHH----HHHHHHCCCCC-EEEECCH-----HHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCEEECCCC-
T ss_conf 716885697899----99986088981-6863661-----899999875986799945999999998689978980687-
Q ss_pred CCCCCCHHHHHHHHCHHHHHHCHHHHHHHHH
Q ss_conf 5467786583544277778748899999874
Q gi|254780342|r 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKN 247 (309)
Q Consensus 217 ~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~ 247 (309)
T Consensus 217 --~--~~~~~~iav~k----~~~~L~~~in~ 239 (264)
T PRK11260 217 --F--SRQESGVALRK----GNPDLLKAVNN 239 (264)
T ss_pred --C--CCCEEEEEEEC----CCHHHHHHHHH
T ss_conf --6--66508999989----99999999999