HHsearch alignment for GI: 254780342 and conserved domain: PRK12680
>PRK12680 transcriptional regulator CysB-like protein; Reviewed.
Probab=96.13 E-value=0.12 Score=30.51 Aligned_cols=209 Identities=9% Similarity=0.027 Sum_probs=129.1
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEE
Q ss_conf 34588379942588699999999999996106984899856405788885149813999840464135666655304702
Q gi|254780342|r 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIK 101 (309)
Q Consensus 22 ~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~ 101 (309)
T Consensus 89 ~~~~G~L~Ig~~~t~a~~~LP~vi~~f~~~yP~V~l~l~~~~~~~l~e~l~~g~~Diai~~~~~~~~--------~~-~~ 159 (327)
T PRK12680 89 RESQGQLTLTTTHTQARFVLPPAVAQIKQAYPQVSVHLQQAAESAALDLLGQGDADIAVVSTAGGEP--------SA-GI 159 (327)
T ss_pred CCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEECCCCCCC--------CC-CE
T ss_conf 8873379999842277775689999999868996799998982889999978994099944777799--------76-54
Q ss_pred EECCCCCCCEEEEEEEHHHH---HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 30135668535678634464---123455356555566544201357854320055587664035452210010366520
Q gi|254780342|r 102 LVAENLQGAKYMLAVNDVGF---ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178 (309)
Q Consensus 102 ~~~~~~~~~~~~~~v~~~~~---~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~ 178 (309)
T Consensus 160 ~-~pl~~~-~~~vvvP~~HpL~~~~~~i~L~~La~------~plI~~~~g~~~r~~id~af~~~Gl~P~-iv~ea~~--- 227 (327)
T PRK12680 160 A-VPLYRW-RRLVVVPRGHALDTPRTAPDMAALAE------HPLISYDSSTRPGSSLQRAFAQVGLEPS-IALTALD--- 227 (327)
T ss_pred E-EEEEEC-CEEEEEECCCCCCCCCCCCCHHHHHC------CCEEECCCCCCHHHHHHHHHHHCCCCCC-EEEEECC---
T ss_conf 7-675223-57999978981005899999999808------9889638998679999999997799764-7999995---
Q ss_pred HHHHHHHHHHCCCCEEE-EEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCH-HHHHHCHHHHHHHHHC--CCCHHH
Q ss_conf 18999999965993699-9412422320158514007865467786583544277-7787488999998740--899899
Q gi|254780342|r 179 SFSQIRRDQRNNIPAVF-LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS-DYLDKCPNISRLLKNI--KFSVAL 254 (309)
Q Consensus 179 ~~a~l~~A~~~~~~~v~-~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~-~~~~~~P~~~~~L~~~--~ls~~~ 254 (309)
T Consensus 228 -~d~Ik~~V~~GlGV~Ivp~mA~~~~--d~~l~~~~~~-~l--~~~~~~~~~~~~~~~lr~~--~~~fi~~~~p~l~~~~ 299 (327)
T PRK12680 228 -ADLIKTYVRAGLGVGLVAEMAVNAF--DEDLRAWPAP-AP--IAECIAWAVLPRDRVLRDY--ALDLVHVLAPQIDKRD 299 (327)
T ss_pred -HHHHHHHHHHCCEEEECHHHHHCCC--CCCEEEEECC-CC--CCCCEEEEEEECCCHHHHH--HHHHHHHHCCCCCHHH
T ss_conf -9999999994986188164762876--8983894064-57--7756059999788468999--9999998668889999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780342|r 255 ENEMM 259 (309)
Q Consensus 255 ~~~l~ 259 (309)
T Consensus 300 ~~~~~ 304 (327)
T PRK12680 300 LRRVL 304 (327)
T ss_pred HHHHH
T ss_conf 99982