HHsearch alignment for GI: 254780342 and conserved domain: TIGR03431
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=98.94 E-value=1.9e-07 Score=68.31 Aligned_cols=220 Identities=14% Similarity=0.122 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHH---HHHHHCCCCEEEEEEC-CHHHHHHHHHCCCC
Q ss_conf 9579999999999986303583458837994258869999999999---9996106984899856-40578888514981
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTS---VILEEILGYKTNIKLL-AVPVTFRSLKNKGI 76 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~~~~~I~ig~~~wte~~v~a~i~~---~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~i 76 (309)
T Consensus 2 ~~r~l~~~~~~~~~~~~~a~a~~~p~~l~~gv~P~~~~~~~~~~~~Pl~~yL~~~lg~~Ve~~~~~~y~~~~eal~~g~~ 81 (288)
T TIGR03431 2 LRRLILSLVAAFMLISSNAQAEDWPKELNFGIIPTENASDLKQRWEPLADYLSKKLGVKVKLFFATDYAGVIEGMRFGKV 81 (288)
T ss_pred CHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCC
T ss_conf 08899999999999743224304883689998069999999999999999999987897899968999999999985983
Q ss_pred EEEEEEECCCCHHHHHHHHHCCCEEEEC----CCC-CCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCC-CCCCCC
Q ss_conf 3999840464135666655304702301----356-6853567863446412345535655556654420135-785432
Q gi|254780342|r 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVA----ENL-QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNE 150 (309)
Q Consensus 77 D~~~e~w~p~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g-~~~~~~ 150 (309)
T Consensus 82 Dia~~~--p~~yv~a~---~~~~~~~la~~~~~~g~~~y~s~iivr~---Ds~i~sl~DLk-------Gk~iaf~~~~St 146 (288)
T TIGR03431 82 DIAWYG--PSSYAEAY---QKANAEAFAIEVNADGSTGYYSVLIVKK---DSPIKSLEDLK-------GKTFGFVDPNST 146 (288)
T ss_pred EEEEEC--CHHHHHHH---HCCCCEEEEEEECCCCCCCEEEEEEEEC---CCCCCCHHHHC-------CCEEEECCCCCC
T ss_conf 099988--47889986---5259748899851588864579999989---99888778957-------987660287411
Q ss_pred CCHHHHH-HH-HHCCCCCCC-E-EEE-CCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHH--C------CCCEEECCCCC
Q ss_conf 0055587-66-403545221-0-010-366520189999999659936999412422320--1------58514007865
Q gi|254780342|r 151 GNQRILD-MI-NNNKFSLKG-F-RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINS--D------LNIHYLPGGEE 217 (309)
Q Consensus 151 ~~~~~~~-~~-~~~~l~~~~-~-~~~-~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~--~------~dl~~Ledp~~ 217 (309)
T Consensus 147 SG~l~P~~~L~~~~g~~~~~~f~~v~~~gs----hd~~~~aV~~G~~Dag~~~~~~~~~~~~~~~~~~~~~lrvi~~S~~ 222 (288)
T TIGR03431 147 SGFLVPSYYLFKKNGIKPKEYFKKVTFSGS----HEAAILAVANGTVDAATTNDENLDRMIRKGQPDAMEDLRIIWKSPL 222 (288)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHEEECCC----HHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCC
T ss_conf 113999999998659972545531331578----7899999985993299833888999997479630313699986788
Q ss_pred CCCCCHHHHHHHHCHHHHHHCHHHHHHHHH
Q ss_conf 467786583544277778748899999874
Q gi|254780342|r 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKN 247 (309)
Q Consensus 218 ~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~ 247 (309)
T Consensus 223 ---iP~~--~~~v~~~l---~~~~~~~i~~ 244 (288)
T TIGR03431 223 ---IPNG--PIVYRKDL---PADLKAKIRK 244 (288)
T ss_pred ---CCCC--CEEEECCC---CHHHHHHHHH
T ss_conf ---8877--18996999---9999999999