>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.

Probab=96.15 E-value=0.1 Score=30.95 Aligned_cols=173 Identities=10% Similarity=0.067 Sum_probs=90.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEEH Q ss_conf 99999999999610698489985640578888514981399984046413566665530470230135668535678634 Q gi|254780342|r 39 AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118 (309) Q Consensus 39 ~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 118 (309) T Consensus 23 G~~~dl~~~i~~-~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t-~~R~~-------~~~fs~p~~~~~~~~~~~~ 93 (218) T cd00134 23 GFDVDLAKAIAK-ELGVKVKFVEVDWDGLITALKSGKVDLIAAGMTIT-PERAK-------QVDFSDPYYKSGQVILVKK 93 (218) T ss_pred EEHHHHHHHHHH-HHCCCEEEEECCHHHHHHHHHCCCCCEEEEEECCC-HHHHC-------CCCCCCCEECCCEEEEEEC T ss_conf 839999999999-96996699975889999998579977688850258-56614-------1455764441570799986 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEE Q ss_conf 46412345535655556654420135785432005558766403545221001036652018999999965993699941 Q gi|254780342|r 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198 (309) Q Consensus 119 ~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~w 198 (309) T Consensus 94 ~---~~~~~~~dl~-------g~~i~v~~g~~~~~----~l~~~~-~--~~~~~~~~---~~~~~~~~l~~G~vD~~v~~ 153 (218) T cd00134 94 G---SPIKSVKDLK-------GKKVAVQKGSTAEK----YLKKAL-P--EAKVVSYD---DNAEALAALENGRADAVIVD 153 (218) T ss_pred C---CCCCCHHHHC-------CCEEEEECCCHHHH----HHHHHH-C--CCEEEEEC---CHHHHHHHHHCCCCEEEEEC T ss_conf 8---9999989977-------96267958988999----999731-5--75499969---99999999985994699976 Q ss_pred CCCHH--HHCC--CCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHH Q ss_conf 24223--2015--8514007865467786583544277778748899999874 Q gi|254780342|r 199 EPHPI--NSDL--NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247 (309) Q Consensus 199 sp~~~--~~~~--dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~ 247 (309) T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~l~~~~n~ 199 (218) T cd00134 154 EIALAALLKKHPPELKIVGPSIDL---EPLGFGVAVG----KDNKELLDAVNK 199 (218) T ss_pred HHHHHHHHHHCCCCCEEECCCCCC---CCEEEEEEEC----CCCHHHHHHHHH T ss_conf 999999998679981996356676---7348999974----999999999999

HHsearch alignment for GI: 254780342 and conserved domain: cd00134