HHsearch alignment for GI: 254780342 and conserved domain: pfam03466
>pfam03466 LysR_substrate LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.
Probab=95.45 E-value=0.22 Score=28.74 Aligned_cols=196 Identities=12% Similarity=0.057 Sum_probs=110.6
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
T Consensus 3 ~~~G~i~I~~~~~~~~~~lp~~l~~f~~~~P~i~i~i~~~~~~~i~~~l~~g~~Di~i~~~~~~~----------~~~~~ 72 (209)
T pfam03466 3 GPRGRLRIGAPPTFAAYLLPPLLARFRERYPDVELELREGDSEELLDLLAEGELDLAIRRGPPDD----------PGLEA 72 (209)
T ss_pred CCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEEEECCCCCC----------CCEEE
T ss_conf 98789999938899999999999999998889289999898488999998698148873178999----------98089
Q ss_pred ECCCCCCCEEEEEEEHHH--HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf 013566853567863446--412345535655556654420135785432005558766403545221001036652018
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVG--FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~--~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~ 180 (309)
T Consensus 73 ~-~l~~-~~~~~~~s~~~~l~~~~~i~~~~l~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~ 139 (209)
T pfam03466 73 R-PLFE-EPLVLVAPPDHPLAAGEPVSLEDLADE------PLILLEPGSGLRDLVDRALERAGLRPRV-ALEVNS----L 139 (209)
T ss_pred E-EEEE-EEEEEEECCCCHHHCCCCCCHHHHCCC------CEEEECCCCCCHHHHHHHHHHCCCCCCE-EEEECC----H
T ss_conf 9-9762-413655336705542897543551466------5798569987137998778764876302-467478----7
Q ss_pred HHHHHHHHCCCCEEEEEECCCHHHH----CCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 9999999659936999412422320----1585140078654677865835442777787488999998740
Q gi|254780342|r 181 SQIRRDQRNNIPAVFLSWEPHPINS----DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 181 a~l~~A~~~~~~~v~~~wsp~~~~~----~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
T Consensus 140 ~~~~~lv~~g~Gi~---~lp~~~~~~~~~~~~L~~i~~~~~~---~~~~~~li~~~-~~~~s~~~~~f~~~l 204 (209)
T pfam03466 140 EALLAAVAAGLGIA---LLPRSAVARELADGRLVVLPLPDPP---LPRPIYLVYRK-GRRLSPAVRAFIDFL 204 (209)
T ss_pred HHHHHHHHHCCEEE---ECCHHHHHHHHHCCCEEEEECCCCC---CCCEEEEEEEC-CCCCCHHHHHHHHHH
T ss_conf 99999999499999---9139999988758998999588888---74479999989-497899999999999