HHsearch alignment for GI: 254780342 and conserved domain: pfam04069

>pfam04069 OpuAC Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).
Probab=100.00  E-value=0  Score=365.89  Aligned_cols=250  Identities=21%  Similarity=0.313  Sum_probs=230.0

Q ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCC-CEEEE
Q ss_conf             83799425886999999999999961069848998564-05788885149813999840464135666655304-70230
Q gi|254780342|r   26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG-SIKLV  103 (309)
Q Consensus        26 ~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~-~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~-~~~~~  103 (309)
T Consensus         1 ktI~ig~~~w~e~~i~a~i~~~~Le~-~G~~V~~~~~~~~~~~~~al~~G~iDi~~~~w~~~~~~~~~~~~~~~~~~~~~   79 (256)
T pfam04069         1 KTIVIGSKNWTEQEILANIAAQLLEA-LGYVVELVGLGSTAVLFAALASGDIDLYPEEWTGTTYEAYKKAVEEKLGLLVL   79 (256)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHCCCCCEEEHHCCCCHHHHHHHHHHCCCCEEEC
T ss_conf             92999268862899999999999997-69816985478708999999769975863330662579999875146873861


Q ss_pred             CCCCCCCEEEEEEEHHHHH-CCCCCHHHHHHHHH---HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCH
Q ss_conf             1356685356786344641-23455356555566---5442013578543200555876640354522100103665201
Q gi|254780342|r  104 AENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKK---ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS  179 (309)
Q Consensus       104 ~~~~~~~~~~~~v~~~~~~-~~i~~~~dl~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~  179 (309)
T Consensus        80 ~~~~~~~~~g~~Vp~~~a~~~~i~si~dL~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~yGl--~~~~~~~~s~~~~  157 (256)
T pfam04069        80 GPLGAGNTYGLAVPKYVAEKPGIKSISDLAKPADDELGFKGEFIGRPDGWGCTRSTEGLLKAYGL--DKYELVEGSEAAM  157 (256)
T ss_pred             CCCCCCCEEEEEECHHHHHHCCCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCC--CCEEECCCCHHHH
T ss_conf             35777875899985888835699879997274210248886553278885400678999986397--6401235855545


Q ss_pred             HHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             89999999659936999412422320158514007865467786583544277778748899999874089989999999
Q gi|254780342|r  180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMM  259 (309)
Q Consensus       180 ~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~  259 (309)
T Consensus       158 ~a~~~~A~~~g~~~v~~~w~p~~~~~~~dl~~L~Dp~~~~~-~~~~v~~v~~~~~~~~~P~~~~~l~~~~~t~~~~~~l~  236 (256)
T pfam04069       158 DALLYAAIKRGEPDVVYAWTPDWMIKKYDLVVLEDPKGLFP-PAYNVVPVVRKGFAEKHPEVAAFLNKLSLDTEDLNELN  236 (256)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHHHCCEEECCCCCCCCC-CCCEEEEEECHHHHHHCHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99999999849988999637616554279699368864579-76558752104677779899999986789999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHH
Q ss_conf             99984599989999999998
Q gi|254780342|r  260 KLILNNKQDRQFVGRTMLRT  279 (309)
Q Consensus       260 ~~v~~~g~~~~~vA~~wL~~  279 (309)
T Consensus       237 ~~v~~~g~~~~~vA~~wl~~  256 (256)
T pfam04069       237 AQVDVEGKDPEEVAKDWLKE  256 (256)
T ss_pred             HHHHHCCCCHHHHHHHHHHC
T ss_conf             99997699999999999859