HHsearch alignment for GI: 254780342 and conserved domain: pfam04069
>pfam04069 OpuAC Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).
Probab=100.00 E-value=0 Score=365.89 Aligned_cols=250 Identities=21% Similarity=0.313 Sum_probs=230.0
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCC-CEEEE
Q ss_conf 83799425886999999999999961069848998564-05788885149813999840464135666655304-70230
Q gi|254780342|r 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG-SIKLV 103 (309)
Q Consensus 26 ~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~-~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~-~~~~~ 103 (309)
T Consensus 1 ktI~ig~~~w~e~~i~a~i~~~~Le~-~G~~V~~~~~~~~~~~~~al~~G~iDi~~~~w~~~~~~~~~~~~~~~~~~~~~ 79 (256)
T pfam04069 1 KTIVIGSKNWTEQEILANIAAQLLEA-LGYVVELVGLGSTAVLFAALASGDIDLYPEEWTGTTYEAYKKAVEEKLGLLVL 79 (256)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHCCCCCEEEHHCCCCHHHHHHHHHHCCCCEEEC
T ss_conf 92999268862899999999999997-69816985478708999999769975863330662579999875146873861
Q ss_pred CCCCCCCEEEEEEEHHHHH-CCCCCHHHHHHHHH---HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCH
Q ss_conf 1356685356786344641-23455356555566---5442013578543200555876640354522100103665201
Q gi|254780342|r 104 AENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKK---ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179 (309)
Q Consensus 104 ~~~~~~~~~~~~v~~~~~~-~~i~~~~dl~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~ 179 (309)
T Consensus 80 ~~~~~~~~~g~~Vp~~~a~~~~i~si~dL~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~yGl--~~~~~~~~s~~~~ 157 (256)
T pfam04069 80 GPLGAGNTYGLAVPKYVAEKPGIKSISDLAKPADDELGFKGEFIGRPDGWGCTRSTEGLLKAYGL--DKYELVEGSEAAM 157 (256)
T ss_pred CCCCCCCEEEEEECHHHHHHCCCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCC--CCEEECCCCHHHH
T ss_conf 35777875899985888835699879997274210248886553278885400678999986397--6401235855545
Q ss_pred HHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 89999999659936999412422320158514007865467786583544277778748899999874089989999999
Q gi|254780342|r 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259 (309)
Q Consensus 180 ~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~ 259 (309)
T Consensus 158 ~a~~~~A~~~g~~~v~~~w~p~~~~~~~dl~~L~Dp~~~~~-~~~~v~~v~~~~~~~~~P~~~~~l~~~~~t~~~~~~l~ 236 (256)
T pfam04069 158 DALLYAAIKRGEPDVVYAWTPDWMIKKYDLVVLEDPKGLFP-PAYNVVPVVRKGFAEKHPEVAAFLNKLSLDTEDLNELN 236 (256)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHCCEEECCCCCCCCC-CCCEEEEEECHHHHHHCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999849988999637616554279699368864579-76558752104677779899999986789999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHH
Q ss_conf 99984599989999999998
Q gi|254780342|r 260 KLILNNKQDRQFVGRTMLRT 279 (309)
Q Consensus 260 ~~v~~~g~~~~~vA~~wL~~ 279 (309)
T Consensus 237 ~~v~~~g~~~~~vA~~wl~~ 256 (256)
T pfam04069 237 AQVDVEGKDPEEVAKDWLKE 256 (256)
T ss_pred HHHHHCCCCHHHHHHHHHHC
T ss_conf 99997699999999999859