HHsearch alignment for GI: 254780342 and conserved domain: smart00062
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=94.52 E-value=0.4 Score=27.09 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEE--ECCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEE
Q ss_conf 99999999999610698489985640578888514981399984--0464135666655304702301356685356786
Q gi|254780342|r 39 AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY--WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116 (309)
Q Consensus 39 ~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~--w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 116 (309)
T Consensus 24 G~~~Dil~~~~~-~lg~~i~~~~~~~~r~~~~l~~g~~D~~~~~~~~~~~r~~~~---------~~-s~p~~~~~~~~~~ 92 (219)
T smart00062 24 GFDVDLAKAIAK-ELGLKVEFVEVSFDNLLTALKSGKIDVVAAGMTITPERAKQV---------DF-SDPYYKSGQVILV 92 (219)
T ss_pred EEHHHHHHHHHH-HHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHHCC---------CC-CCCEECCCEEEEE
T ss_conf 829999999999-979967999847899999997589770531135786775002---------22-4550024447999
Q ss_pred EHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 34464123455356555566544201357854320055587664035452210010366520189999999659936999
Q gi|254780342|r 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196 (309)
Q Consensus 117 ~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~ 196 (309)
T Consensus 93 ~~---~~~~~~~~dL~-------g~~i~~~~g~~~~----~~l~~~~~~~~~~~-~~-~----~~~~~~~l~~g~vD~~i 152 (219)
T smart00062 93 RK---DSPIKSLEDLK-------GKKVAVVAGTTGE----ELLKKLYPEAKIVS-YD-S----QAEALAALKAGRADAAV 152 (219)
T ss_pred EC---CCCCCCHHHHC-------CCEEEEECCCHHH----HHHHHHCCCCEEEE-EC-C----HHHHHHHHHCCCEEEEE
T ss_conf 65---89979979967-------9779995798799----99997287852898-59-9----99999999839879999
Q ss_pred EECCC--HHHHCCCC---EEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHH
Q ss_conf 41242--23201585---14007865467786583544277778748899999874
Q gi|254780342|r 197 SWEPH--PINSDLNI---HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247 (309)
Q Consensus 197 ~wsp~--~~~~~~dl---~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~ 247 (309)
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~l~~~~n~ 200 (219)
T smart00062 153 ADAPALAALVKQHGLPELKIVGDPLD----TPEGYAFAVRK----GDPELLDKINK 200 (219)
T ss_pred ECHHHHHHHHHHCCCCCEEEECCCCC----CCCEEEEEEEC----CCHHHHHHHHH
T ss_conf 77999999998489998378346777----76419999959----99999999999