HHsearch results for GI: 254780342 and protein with PDBid: 1r9l_A
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=100.00 E-value=0 Score=350.92 Aligned_cols=269 Identities=17% Similarity=0.198 Sum_probs=237.6
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE-ECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 358345883799425886999999999999961069848998-5640578888514981399984046413566665530
Q gi|254780342|r 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK-LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE 97 (309)
Q Consensus 19 ~~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~-~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~ 97 (309)
+..|+++.||+||+++|||++++++|++++||+ +||+|+.+ .++++++|++|++|+||+|+|||+|.....+.+...+
T Consensus 1 ~~~p~~g~tv~~~~~~wte~~i~~ei~~~~Le~-~Gy~V~~~~~~~~~~~~~al~~G~iDi~~E~w~~~~~~~~~~~~~~ 79 (309)
T 1r9l_A 1 ADLPGKGITVNPVQSTITEETFQTLLVSRALEK-LGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGD 79 (309)
T ss_dssp CCCTTTTCEECEEECSCGGGHHHHHHHHHHHHH-TTCEECCCEECCHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGG
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCC
T ss_conf 998999988988417852899999999999998-6996475147873999999986997599844346100465643044
Q ss_pred CCEEEECCCCCCCEEEEEEEHHHHHC-CCCCHHHHHHHH--------HHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 47023013566853567863446412-345535655556--------654420135785432005558766403545221
Q gi|254780342|r 98 GSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYK--------KELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~i~~~~dl~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 168 (309)
+..+.++..+.+...+|+||.|+++. .+.++.++.+.. ..++++++||+++|.++.......+.|+|.. +
T Consensus 80 ~~~~~~~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ygl~~-~ 158 (309)
T 1r9l_A 80 KKFYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTN-T 158 (309)
T ss_dssp GTEEECSCSEEEEEEEEEEEHHHHHHHTCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTT-T
T ss_pred CCEEEECCCCCCCCEEEEECHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHHCCCCC-C
T ss_conf 406870345556620476324167655754076653456776514333334332236763011221666654305543-1
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCE----EECCCC----------------CCCCCCHHHHHH
Q ss_conf 001036652018999999965993699941242232015851----400786----------------546778658354
Q gi|254780342|r 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH----YLPGGE----------------EISGFGEASVYT 228 (309)
Q Consensus 169 ~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~----~Ledp~----------------~~~~~p~~~~~~ 228 (309)
+.+..++++++.+.+..|+++++|+++++|+|||++.+|++. .+.+|. ..|+||++++.+
T Consensus 159 ~~~~~~s~~~~~~~~~~a~~~~~~i~~~~w~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 238 (309)
T 1r9l_A 159 VTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHI 238 (309)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCCEEEEEESSSHHHHSCBTTTEEECBCSSCCCTTCTTCCCBCTTSCBCSSCSEEEEE
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 24404675789999998643367669996144123124201213434466865557645444568876455673666322
Q ss_pred HHCHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 427777874889999987408998999999999984599---9899999999985999998754
Q gi|254780342|r 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ---DRQFVGRTMLRTHPDLLKNWLI 289 (309)
Q Consensus 229 vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~~v~~~g~---~~~~vA~~wL~~n~~~~~~Wl~ 289 (309)
++|++|+++||+++++|++++||+++|++||+.|+.++. +|++||++||++|+++|++||+
T Consensus 239 vv~~~~~~~~P~~~~~L~~~~lt~e~~~~ln~~v~~~~~~~~d~~~vA~~wL~~n~~~~~~W~~ 302 (309)
T 1r9l_A 239 VANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVN 302 (309)
T ss_dssp EEEHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHH
T ss_conf 6525687779899999985689999999999999845788778999999999979699999852