HHsearch results for GI: 254780342 and protein with PDBid: 1twy_A
>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1
Probab=96.60 E-value=0.004 Score=38.69 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHCCCCEEE
Q ss_conf 95799999999999863035834588379942588699999999999996106-98489985640578888514981399
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL-GYKTNIKLLAVPVTFRSLKNKGIDIF 79 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~l-Gy~Ve~~~~~~~~~~~al~~G~iD~~ 79 (309)
|+|+.++.++++++++...+......+|+|+...... .++..+.. ..++.. |.+|++..+++...+..|.+|..|+.
T Consensus 3 ~~~~~l~~~~a~~~~~~~~~~~a~~~~i~i~gs~s~~-~l~~~l~~-~f~~~~P~~~v~~~~~gSg~~~~~l~~g~~di~ 80 (290)
T 1twy_A 3 LIRMALAAVCALLFSITTMTPFVQASEITISGSTSVA-RIMDVLAE-KYNQQHPETYVAVQGVGSTAGISLLKKGVADIA 80 (290)
T ss_dssp -------------------------CEEEEEECHHHH-HHHHHHHH-HHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHH-HHHHHHHH-HHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCC
T ss_conf 6899999999999999835430248869999605499-99999999-999888895799971686799999982686412
Q ss_pred EEE
Q ss_conf 984
Q gi|254780342|r 80 MGY 82 (309)
Q Consensus 80 ~e~ 82 (309)
.-.
T Consensus 81 ~~s 83 (290)
T 1twy_A 81 MTS 83 (290)
T ss_dssp EES
T ss_pred CCC
T ss_conf 255