HHsearch results for GI: 254780342 and protein with PDBid: 1xt8_A
>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=96.71 E-value=0.0098 Score=36.18 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=82.8
Q ss_pred CCEEEECC----CCC---HH----HHHHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHH
Q ss_conf 83799425----886---99----9999999999961069---8489985640578888514981399984046413566
Q gi|254780342|r 26 TPVRFADT----GWT---DI----AATTAMTSVILEEILG---YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI 91 (309)
Q Consensus 26 ~~I~ig~~----~wt---e~----~v~a~i~~~iLE~~lG---y~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~ 91 (309)
++|+||.. +|. +. -+...+++.+-++ +| ++|+..+.+.....+++.+|++|+.+..+..+..
T Consensus 44 g~l~Vgv~~~~pP~~~~d~~G~~~G~~~Dl~~~ia~~-Lg~~~~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~--- 119 (292)
T 1xt8_A 44 GVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKE-LFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQ--- 119 (292)
T ss_dssp SSEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHH-HHSCTTCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHH---
T ss_pred CEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHH-HCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCC---
T ss_conf 9899998589899069999998873068999999998-558971799996347868999986997711355656711---
Q ss_pred HHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE
Q ss_conf 66553047023013566853567863446412345535655556654420135785432005558766403545221001
Q gi|254780342|r 92 APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171 (309)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (309)
+. ... .....+......+.+++. ..+.+++||. ++.+|...++.... .+....... ++
T Consensus 120 R~----~~~-~fs~py~~~~~~~~~~~~---~~i~~~~dL~-------g~~V~v~~g~~~~~----~l~~~~~~~---~~ 177 (292)
T 1xt8_A 120 RA----EQV-DFCSPYMKVALGVAVPKD---SNITSVEDLK-------DKTLLLNKGTTADA----YFTQNYPNI---KT 177 (292)
T ss_dssp HH----TTE-EECCCCEEEEEEEEEETT---CCCCSSGGGT-------TSEEEEETTSHHHH----HHHHHCTTS---EE
T ss_pred HH----CCC-CCCCCEEECCCEEEEECC---CCCCCHHHHH-------HCEEEEECCCHHHH----HHHHHHHHH---HH
T ss_conf 21----024-667534741513787224---5767477770-------06677515858999----999710000---00
Q ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEEECCCH
Q ss_conf 0366520189999999659936999412422
Q gi|254780342|r 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHP 202 (309)
Q Consensus 172 ~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~ 202 (309)
+.-. -..+..+++.+|+.+++..-.+..
T Consensus 178 v~~~---~~~~~~~~l~~G~vDa~~~d~~~~ 205 (292)
T 1xt8_A 178 LKYD---QNTETFAALMDKRGDALSHDNTLL 205 (292)
T ss_dssp EEES---SHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred EEEC---CCCCHHHHHHCCCEEEEEECHHHH
T ss_conf 0000---222011244369369999569999