HHsearch results for GI: 254780342 and protein with PDBid: 2pvu_A
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, thermophilic bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=95.80 E-value=0.082 Score=30.18 Aligned_cols=165 Identities=10% Similarity=0.095 Sum_probs=90.2
Q ss_pred CCCCEEEEC-CCCC-----H----HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHH
Q ss_conf 588379942-5886-----9----99999999999961069848998564057888851498139998404641356666
Q gi|254780342|r 24 SCTPVRFAD-TGWT-----D----IAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93 (309)
Q Consensus 24 ~~~~I~ig~-~~wt-----e----~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~ 93 (309)
+.++|+||+ .+|+ + .-+...|+.++.++ +|++++++..+...++.+|.+|++|+.+..+..+. ...
T Consensus 40 ~~~~l~Vg~~~~~~P~~~~~~G~~~G~~vDl~~~ia~~-lg~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~-~R~-- 115 (272)
T 2pvu_A 40 TKKKVVVGTDAAFAPFEYMQKGKIVGFDVDLLDAVMKA-AGLDYELKNIGWDPLFASLQSKEVDMGISGITITD-ERK-- 115 (272)
T ss_dssp CCCCEEEEECCCBTTTBEEETTEEESHHHHHHHHHHHH-HTCCEEEEECCHHHHHHHHHHTSSSEECSSCBCCH-HHH--
T ss_pred CCCEEEEEECCCCCCCEEEECCEEEEHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCH-HHH--
T ss_conf 58989999899878935856997788199999999998-09965999779899999997599668951455787-774--
Q ss_pred HHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 55304702301356685356786344641234553565555665442013578543200555876640354522100103
Q gi|254780342|r 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173 (309)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 173 (309)
..+. ....+......+++++. ..+.++.+| .++.++...+........... ... .++..
T Consensus 116 ----~~~~-~s~p~~~~~~~~~~~~~---~~~~~~~~l-------~~~~v~~~~g~~~~~~~~~~~---~~~---~~i~~ 174 (272)
T 2pvu_A 116 ----QSYD-FSDPYFEATQVILVKQG---SPVKNALDL-------KGKTIGVQNATTGQEAAEKLF---GKG---PHIKK 174 (272)
T ss_dssp ----TTEE-ECSCCEEECEEEEEETT---CCCCSGGGG-------TTSCEEEETTSHHHHHHHHHH---CSS---TTEEE
T ss_pred ----CCCC-CCCCCCCCCEEEEEECC---CCCCCHHHH-------CCCEEEEECCCCHHHHHHHHH---CCC---CEEEE
T ss_conf ----1055-67463056378997448---767885886-------798577625763999999873---448---73430
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCHH--HHC---CCCEEECCCC
Q ss_conf 665201899999996599369994124223--201---5851400786
Q gi|254780342|r 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPI--NSD---LNIHYLPGGE 216 (309)
Q Consensus 174 ~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~--~~~---~dl~~Ledp~ 216 (309)
.. ...+...++.+|+.+++....+... +.+ ..++.+.+|.
T Consensus 175 ~~---~~~~~~~~l~~GrvD~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (272)
T 2pvu_A 175 FE---TTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPK 219 (272)
T ss_dssp ES---SHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTT
T ss_pred CC---CHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 42---0899999998598116526659899999858998769951676