HHsearch results for GI: 254780342 and protein with PDBid: 2v25_A

>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=98.15  E-value=3.3e-05  Score=52.30  Aligned_cols=215  Identities=13%  Similarity=0.076  Sum_probs=116.8

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCC----------CCCCEEEECC-CCC--------HH---HHHHHHHHHHHHHC--CCCE
Q ss_conf             95799999999999863035834----------5883799425-886--------99---99999999999610--6984
Q gi|254780342|r    1 MYKILAVCLFLTTFSISYARDAD----------SCTPVRFADT-GWT--------DI---AATTAMTSVILEEI--LGYK   56 (309)
Q Consensus         1 mkk~~~~~~~~~~~~~~~~~~~~----------~~~~I~ig~~-~wt--------e~---~v~a~i~~~iLE~~--lGy~   56 (309)
                      |||.+..++++++++|+..+...          +.++|+||.. +|+        .+   -+...++..+.+.-  .+++
T Consensus         3 ~~k~l~~~~~~~l~~~~~~~~~~~a~~~l~~i~~~~~l~V~~~~~~pP~~~~d~~~g~~~G~~~di~~~ia~~~~~~~~~   82 (259)
T 2v25_A            3 FRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGVKNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK   82 (259)
T ss_dssp             --------------------------CHHHHHHHHTCEEEEECSEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEEECCCCCCCEEEECCCCEEEEEEEHHHHHHHHHHCCCCCE
T ss_conf             37999999999999998723311132659999609989999828978832466789848889864765688872788757


Q ss_pred             EEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHH
Q ss_conf             89985640578888514981399984046413566665530470230135668535678634464123455356555566
Q gi|254780342|r   57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK  136 (309)
Q Consensus        57 Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~  136 (309)
                      ++..+.+......++.+|++|+.+.....+..   +    + .....+..+......+++++..   .+.+++||.    
T Consensus        83 v~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~---r----~-~~~~fs~p~~~~~~~~~~~~~~---~i~s~~dL~----  147 (259)
T 2v25_A           83 IKLVAVNAKTRGPLLDNGSVDAVIATFTITPE---R----K-RIYNFSEPYYQDAIGLLVLKEK---KYKSLADMK----  147 (259)
T ss_dssp             EEEEECCTTTHHHHHHTTSCSEECSSCBCCHH---H----H-TTEEECSCSEEEEEEEEEEGGG---CCCSGGGCT----
T ss_pred             EEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHH---H----H-HCEEECEEEECCCCCEEEECCC---CCCCHHHHC----
T ss_conf             99998337758999976996600333668978---8----1-0114220344045430220357---979978926----


Q ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH-HHCCCCEEECCC
Q ss_conf             5442013578543200555876640354522100103665201899999996599369994124223-201585140078
Q gi|254780342|r  137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI-NSDLNIHYLPGG  215 (309)
Q Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~-~~~~dl~~Ledp  215 (309)
                         ++.+|...++.......+.....+...   +++...   ...++..++.+|+.+++....+-.. ..+...+.+..+
T Consensus       148 ---g~~I~v~~gs~~~~~l~~~~~~~~~~~---~~~~~~---s~~~~~~~l~~g~vDa~i~d~~~~~~~~~~~~~i~~~~  218 (259)
T 2v25_A          148 ---GANIGVAQAATTKKAIGEAAKKIGIDV---KFSEFP---DYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS  218 (259)
T ss_dssp             ---TCEEEEETTCSHHHHHHHHHHHTTCCC---EEEEES---SHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEEECSCC
T ss_pred             ---CCCCCEECCCCHHHHHHHHHHHCCCCE---EEECCC---HHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCCCC
T ss_conf             ---985002347707788999998708844---442142---07888765427837899735999999997397435787


Q ss_pred             CCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf             654677865835442777787488999998740
Q gi|254780342|r  216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI  248 (309)
Q Consensus       216 ~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~  248 (309)
                      -     .+......+++    .+|+..+.+++.
T Consensus       219 ~-----~~~~~~~~~~k----~~~~l~~~ln~~  242 (259)
T 2v25_A          219 F-----EPQSYGIVTKK----DDPAFAKYVDDF  242 (259)
T ss_dssp             C-----SEEEECCEEET----TCHHHHHHHHHH
T ss_pred             C-----CCEEEEEEEEC----CCHHHHHHHHHH
T ss_conf             7-----73269999958----999999999999