HHsearch results for GI: 254780342 and protein with PDBid: 2v25_A
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=98.15 E-value=3.3e-05 Score=52.30 Aligned_cols=215 Identities=13% Similarity=0.076 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCC----------CCCCEEEECC-CCC--------HH---HHHHHHHHHHHHHC--CCCE
Q ss_conf 95799999999999863035834----------5883799425-886--------99---99999999999610--6984
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDAD----------SCTPVRFADT-GWT--------DI---AATTAMTSVILEEI--LGYK 56 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~----------~~~~I~ig~~-~wt--------e~---~v~a~i~~~iLE~~--lGy~ 56 (309)
|||.+..++++++++|+..+... +.++|+||.. +|+ .+ -+...++..+.+.- .+++
T Consensus 3 ~~k~l~~~~~~~l~~~~~~~~~~~a~~~l~~i~~~~~l~V~~~~~~pP~~~~d~~~g~~~G~~~di~~~ia~~~~~~~~~ 82 (259)
T 2v25_A 3 FRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGVKNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK 82 (259)
T ss_dssp --------------------------CHHHHHHHHTCEEEEECSEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEEECCCCCCCEEEECCCCEEEEEEEHHHHHHHHHHCCCCCE
T ss_conf 37999999999999998723311132659999609989999828978832466789848889864765688872788757
Q ss_pred EEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHH
Q ss_conf 89985640578888514981399984046413566665530470230135668535678634464123455356555566
Q gi|254780342|r 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136 (309)
Q Consensus 57 Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~ 136 (309)
++..+.+......++.+|++|+.+.....+.. + + .....+..+......+++++.. .+.+++||.
T Consensus 83 v~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~---r----~-~~~~fs~p~~~~~~~~~~~~~~---~i~s~~dL~---- 147 (259)
T 2v25_A 83 IKLVAVNAKTRGPLLDNGSVDAVIATFTITPE---R----K-RIYNFSEPYYQDAIGLLVLKEK---KYKSLADMK---- 147 (259)
T ss_dssp EEEEECCTTTHHHHHHTTSCSEECSSCBCCHH---H----H-TTEEECSCSEEEEEEEEEEGGG---CCCSGGGCT----
T ss_pred EEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHH---H----H-HCEEECEEEECCCCCEEEECCC---CCCCHHHHC----
T ss_conf 99998337758999976996600333668978---8----1-0114220344045430220357---979978926----
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH-HHCCCCEEECCC
Q ss_conf 5442013578543200555876640354522100103665201899999996599369994124223-201585140078
Q gi|254780342|r 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI-NSDLNIHYLPGG 215 (309)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~-~~~~dl~~Ledp 215 (309)
++.+|...++.......+.....+... +++... ...++..++.+|+.+++....+-.. ..+...+.+..+
T Consensus 148 ---g~~I~v~~gs~~~~~l~~~~~~~~~~~---~~~~~~---s~~~~~~~l~~g~vDa~i~d~~~~~~~~~~~~~i~~~~ 218 (259)
T 2v25_A 148 ---GANIGVAQAATTKKAIGEAAKKIGIDV---KFSEFP---DYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS 218 (259)
T ss_dssp ---TCEEEEETTCSHHHHHHHHHHHTTCCC---EEEEES---SHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEEECSCC
T ss_pred ---CCCCCEECCCCHHHHHHHHHHHCCCCE---EEECCC---HHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCCCC
T ss_conf ---985002347707788999998708844---442142---07888765427837899735999999997397435787
Q ss_pred CCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 654677865835442777787488999998740
Q gi|254780342|r 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 216 ~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
- .+......+++ .+|+..+.+++.
T Consensus 219 ~-----~~~~~~~~~~k----~~~~l~~~ln~~ 242 (259)
T 2v25_A 219 F-----EPQSYGIVTKK----DDPAFAKYVDDF 242 (259)
T ss_dssp C-----SEEEECCEEET----TCHHHHHHHHHH
T ss_pred C-----CCEEEEEEEEC----CCHHHHHHHHHH
T ss_conf 7-----73269999958----999999999999