HHsearch results for GI: 254780342 and protein with PDBid: 2vha_A
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=96.34 E-value=0.041 Score=32.13 Aligned_cols=163 Identities=12% Similarity=0.150 Sum_probs=85.6
Q ss_pred CCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHH
Q ss_conf 69848998564057888851498139998404641356666553047023013566853567863446412345535655
Q gi|254780342|r 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132 (309)
Q Consensus 53 lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~ 132 (309)
.+++++.++......+.+|.+|++|+.+.....+ .. +. ..+.. ...+......+.+++. ..+.++.+|.
T Consensus 61 ~~~~v~~~~~~~~~~~~~L~~G~~Di~~~~~~~t-~~--R~----~~~~f-s~p~~~~~~~l~~~k~---~~i~~~~dL~ 129 (287)
T 2vha_A 61 PDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNN-VE--RQ----KQAAF-SDTIFVVGTRLLTKKG---GDIKDFADLK 129 (287)
T ss_dssp TTCEEEEEECCTTTHHHHHHTTSCSEECSSCBCC-HH--HH----TTCEE-EEEEEEEEEEEEEETT---SSCCSGGGGT
T ss_pred CCEEEEEEECCHHHHHHHHHCCCCCEEECCCCCC-HH--HH----HHCCC-CCCCCCCCCEEEEECC---CCCCCHHHCC
T ss_conf 8706999987999999999869964341134466-45--65----43245-5430004725777548---9878987808
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHH--HC----
Q ss_conf 556654420135785432005558766403545221001036652018999999965993699941242232--01----
Q gi|254780342|r 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN--SD---- 206 (309)
Q Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~--~~---- 206 (309)
++.+|...+................. .+++.... ..++.+++.+|+.+++..+.+.... ..
T Consensus 130 -------g~~v~v~~gs~~~~~l~~~~~~~~~~---~~iv~~~~---~~~~~~~l~~grvD~~i~~~~~~~~~~~~~~~~ 196 (287)
T 2vha_A 130 -------GKAVVVTSGTTSEVLLNKLNEEQKMN---MRIISAKD---HGDSFRTLESGRAVAFMMDDALLAGERAKAKKP 196 (287)
T ss_dssp -------TCEEEEETTSHHHHHHHHHHHHTTCC---CEEEEESS---HHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSG
T ss_pred -------CCCEEECCCCHHHHHHHHHHHHHCCC---CCEEECCH---HHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCC
T ss_conf -------98122137866999999988873789---63465221---789999998699409996149999999965788
Q ss_pred CCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 585140078654677865835442777787488999998740
Q gi|254780342|r 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 207 ~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
-.++++..+.. ......++++ .+|+..+.+++.
T Consensus 197 ~~~~~~~~~~~-----~~~~~~av~k----~~~~L~~~in~~ 229 (287)
T 2vha_A 197 DNWDIVGKPQS-----QEAYGCMLRK----DDPQFKKLMDDT 229 (287)
T ss_dssp GGEEEESCCSC-----EEEEEEEECT----TCHHHHHHHHHH
T ss_pred CCEEEECCCCC-----CCEEEEEEEC----CCHHHHHHHHHH
T ss_conf 86799378777-----6318999948----999999999999