HHsearch results for GI: 254780342 and protein with PDBid: 3b50_A
>3b50_A Sialic acid-binding periplasmic protein SIAP; periplasmic binding protein, trap, sugar transport, transport, transport protein; HET: SLB; 1.40A {Haemophilus influenzae} PDB: 2v4c_A* 2cey_A 2cex_A
Probab=95.59 E-value=0.12 Score=29.05 Aligned_cols=246 Identities=12% Similarity=0.126 Sum_probs=120.8
Q ss_pred CEEEEC--CCCCHHHHHHHHHHHHHHHCCCCEEEEEE------CCHHHHHHHHHCCCCEEEEEEE--------------C
Q ss_conf 379942--58869999999999999610698489985------6405788885149813999840--------------4
Q gi|254780342|r 27 PVRFAD--TGWTDIAATTAMTSVILEEILGYKTNIKL------LAVPVTFRSLKNKGIDIFMGYW--------------Y 84 (309)
Q Consensus 27 ~I~ig~--~~wte~~v~a~i~~~iLE~~lGy~Ve~~~------~~~~~~~~al~~G~iD~~~e~w--------------~ 84 (309)
++|++. .+-+..+...+..++.+|++.+..|++.. ++...+++++.+|.+|+..-.- .
T Consensus 4 ~lr~~~~~~~~~~~~~~~e~fa~~V~e~t~G~v~v~v~~~g~Lg~~~e~~~av~~G~vd~~~~~~~~~~~~~p~~~~~~l 83 (310)
T 3b50_A 4 DLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFAL 83 (310)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGGGGS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECHHHHCCCCCHHHHCCC
T ss_conf 99997258999868899999999999976994999996698748879999999779957897533332445803442157
Q ss_pred CC-----------------CHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 64-----------------1356666553047023013566853567863446412345535655556654420135785
Q gi|254780342|r 85 PS-----------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP 147 (309)
Q Consensus 85 p~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~ 147 (309)
|. ....+.+..++..+..++....+.+.. . ....|.+.+||+ +..+-+.+
T Consensus 84 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~~~~-~-----~~~pi~s~~Dlk-------G~kiRv~~ 150 (310)
T 3b50_A 84 PYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQT-T-----SNRAINSIADMK-------GLKLRVPN 150 (310)
T ss_dssp TTTSCSHHHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEEE-E-----ESSCCCSGGGGT-------TCEEEECS
T ss_pred CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEEECCCCCCCC-C-----CCCCCCCHHHHC-------CCEEECCC
T ss_conf 6567987988888751188999999998756936876315762114-6-----798999968967-------88464368
Q ss_pred CCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEE-ECCCHHHHCCCC-EEECCCCCCCCCCHHH
Q ss_conf 43200555876640354522100103665201899999996599369994-124223201585-1400786546778658
Q gi|254780342|r 148 GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS-WEPHPINSDLNI-HYLPGGEEISGFGEAS 225 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~-wsp~~~~~~~dl-~~Ledp~~~~~~p~~~ 225 (309)
.......++..|. ..+..+ +.+++.|+++|.++-... ++..-.+.-+++ .++-++...+ ..+
T Consensus 151 ----~~~~~~~~~~lGa-----~pv~~~----~~evy~aLq~G~vDg~~~~~~~~~~~~~~ev~~y~~~~~~~~--~~~- 214 (310)
T 3b50_A 151 ----AATNLAYAKYVGA-----SPTPMA----FSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHIL--NDQ- 214 (310)
T ss_dssp ----CHHHHHHHHHTTC-----EEEECC----GGGHHHHHHTTSSSEEEEEHHHHHHTTGGGSCSEEECCCCCE--EEE-
T ss_pred ----CCHHHHHHHHCCC-----EEEEEC----CCCHHHHHHCCCCCCCCCCCHHHHHCCCEEEEEEEECCCCCC--EEH-
T ss_conf ----6054679997397-----536735----641568987598653327610012033125546763277521--000-
Q ss_pred HHHHHCHHHHHHCH-HHHHHHHHC---------CCCHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 35442777787488-999998740---------899899999999998459998999-9999998599999875475456
Q gi|254780342|r 226 VYTVVRSDYLDKCP-NISRLLKNI---------KFSVALENEMMKLILNNKQDRQFV-GRTMLRTHPDLLKNWLIGVTTF 294 (309)
Q Consensus 226 ~~~vv~~~~~~~~P-~~~~~L~~~---------~ls~~~~~~l~~~v~~~g~~~~~v-A~~wL~~n~~~~~~Wl~~~~~~ 294 (309)
..++++++-+.-| +..++|... ....+...+....+...|....+. ..+|-+.=+..|++|++-+ -.
T Consensus 215 -~~~~n~~~w~~Lp~~~q~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~i~~~e~~~~~~~~~~~~~~~~~~~-g~ 292 (310)
T 3b50_A 215 -LYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFFEKQGVKITHPDLVPFKESMKPYYAEFVKQT-GQ 292 (310)
T ss_dssp -EEEEEHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCSHHHHHHTHHHHHHHHHHH-HH
T ss_pred -HEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHH-CH
T ss_conf -1013089886488999999999999999999999999889999999978599891348999997099999999986-76
Q ss_pred CCHHHHHHH
Q ss_conf 771379999
Q gi|254780342|r 295 DGQDPSRQL 303 (309)
Q Consensus 295 ~~~~~~~~~ 303 (309)
+|++..+++
T Consensus 293 ~g~~~~~~~ 301 (310)
T 3b50_A 293 KGESALKQI 301 (310)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 899999999