HHsearch results for GI: 254780342 and protein with PDBid: 3b50_A

>3b50_A Sialic acid-binding periplasmic protein SIAP; periplasmic binding protein, trap, sugar transport, transport, transport protein; HET: SLB; 1.40A {Haemophilus influenzae} PDB: 2v4c_A* 2cey_A 2cex_A
Probab=95.59  E-value=0.12  Score=29.05  Aligned_cols=246  Identities=12%  Similarity=0.126  Sum_probs=120.8

Q ss_pred             CEEEEC--CCCCHHHHHHHHHHHHHHHCCCCEEEEEE------CCHHHHHHHHHCCCCEEEEEEE--------------C
Q ss_conf             379942--58869999999999999610698489985------6405788885149813999840--------------4
Q gi|254780342|r   27 PVRFAD--TGWTDIAATTAMTSVILEEILGYKTNIKL------LAVPVTFRSLKNKGIDIFMGYW--------------Y   84 (309)
Q Consensus        27 ~I~ig~--~~wte~~v~a~i~~~iLE~~lGy~Ve~~~------~~~~~~~~al~~G~iD~~~e~w--------------~   84 (309)
                      ++|++.  .+-+..+...+..++.+|++.+..|++..      ++...+++++.+|.+|+..-.-              .
T Consensus         4 ~lr~~~~~~~~~~~~~~~e~fa~~V~e~t~G~v~v~v~~~g~Lg~~~e~~~av~~G~vd~~~~~~~~~~~~~p~~~~~~l   83 (310)
T 3b50_A            4 DLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFAL   83 (310)
T ss_dssp             EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGGGGS
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECHHHHCCCCCHHHHCCC
T ss_conf             99997258999868899999999999976994999996698748879999999779957897533332445803442157


Q ss_pred             CC-----------------CHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             64-----------------1356666553047023013566853567863446412345535655556654420135785
Q gi|254780342|r   85 PS-----------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP  147 (309)
Q Consensus        85 p~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~  147 (309)
                      |.                 ....+.+..++..+..++....+.+.. .     ....|.+.+||+       +..+-+.+
T Consensus        84 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~~~~-~-----~~~pi~s~~Dlk-------G~kiRv~~  150 (310)
T 3b50_A           84 PYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQT-T-----SNRAINSIADMK-------GLKLRVPN  150 (310)
T ss_dssp             TTTSCSHHHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEEE-E-----ESSCCCSGGGGT-------TCEEEECS
T ss_pred             CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEEECCCCCCCC-C-----CCCCCCCHHHHC-------CCEEECCC
T ss_conf             6567987988888751188999999998756936876315762114-6-----798999968967-------88464368


Q ss_pred             CCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEE-ECCCHHHHCCCC-EEECCCCCCCCCCHHH
Q ss_conf             43200555876640354522100103665201899999996599369994-124223201585-1400786546778658
Q gi|254780342|r  148 GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS-WEPHPINSDLNI-HYLPGGEEISGFGEAS  225 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~-wsp~~~~~~~dl-~~Ledp~~~~~~p~~~  225 (309)
                          .......++..|.     ..+..+    +.+++.|+++|.++-... ++..-.+.-+++ .++-++...+  ..+ 
T Consensus       151 ----~~~~~~~~~~lGa-----~pv~~~----~~evy~aLq~G~vDg~~~~~~~~~~~~~~ev~~y~~~~~~~~--~~~-  214 (310)
T 3b50_A          151 ----AATNLAYAKYVGA-----SPTPMA----FSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHIL--NDQ-  214 (310)
T ss_dssp             ----CHHHHHHHHHTTC-----EEEECC----GGGHHHHHHTTSSSEEEEEHHHHHHTTGGGSCSEEECCCCCE--EEE-
T ss_pred             ----CCHHHHHHHHCCC-----EEEEEC----CCCHHHHHHCCCCCCCCCCCHHHHHCCCEEEEEEEECCCCCC--EEH-
T ss_conf             ----6054679997397-----536735----641568987598653327610012033125546763277521--000-


Q ss_pred             HHHHHCHHHHHHCH-HHHHHHHHC---------CCCHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             35442777787488-999998740---------899899999999998459998999-9999998599999875475456
Q gi|254780342|r  226 VYTVVRSDYLDKCP-NISRLLKNI---------KFSVALENEMMKLILNNKQDRQFV-GRTMLRTHPDLLKNWLIGVTTF  294 (309)
Q Consensus       226 ~~~vv~~~~~~~~P-~~~~~L~~~---------~ls~~~~~~l~~~v~~~g~~~~~v-A~~wL~~n~~~~~~Wl~~~~~~  294 (309)
                       ..++++++-+.-| +..++|...         ....+...+....+...|....+. ..+|-+.=+..|++|++-+ -.
T Consensus       215 -~~~~n~~~w~~Lp~~~q~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~i~~~e~~~~~~~~~~~~~~~~~~~-g~  292 (310)
T 3b50_A          215 -LYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFFEKQGVKITHPDLVPFKESMKPYYAEFVKQT-GQ  292 (310)
T ss_dssp             -EEEEEHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCSHHHHHHTHHHHHHHHHHH-HH
T ss_pred             -HEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHH-CH
T ss_conf             -1013089886488999999999999999999999999889999999978599891348999997099999999986-76


Q ss_pred             CCHHHHHHH
Q ss_conf             771379999
Q gi|254780342|r  295 DGQDPSRQL  303 (309)
Q Consensus       295 ~~~~~~~~~  303 (309)
                      +|++..+++
T Consensus       293 ~g~~~~~~~  301 (310)
T 3b50_A          293 KGESALKQI  301 (310)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             899999999