HHsearch results for GI: 254780342 and protein with PDBid: 3g41_A
>3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae} PDB: 3n26_A*
Probab=95.80 E-value=0.03 Score=32.96 Aligned_cols=156 Identities=11% Similarity=0.023 Sum_probs=85.5
Q ss_pred CCCCCCEEEEC-CCCC-------H---HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHH
Q ss_conf 34588379942-5886-------9---99999999999961069848998564057888851498139998404641356
Q gi|254780342|r 22 ADSCTPVRFAD-TGWT-------D---IAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF 90 (309)
Q Consensus 22 ~~~~~~I~ig~-~~wt-------e---~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~ 90 (309)
-...++++||. .+|+ . .-+...++..+.++ +|++++++..+.....++|.+|.+|+........ ...
T Consensus 6 ~~~~~~l~Vg~~~~~~P~~~~~~~g~~~G~~~dl~~~ia~~-lg~~~~~~~~~~~~~~~~l~~g~~d~i~~~~~~~-~~r 83 (246)
T 3g41_A 6 IDRNRIWIVGTNATYPPFEYVDAQGEVVGFDIDLAKAISEK-LGKQLEVREFAFDALILNLKKHRIDAILAGMSIT-PSR 83 (246)
T ss_dssp -CCCCEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHH-HTCEEEEEECCGGGHHHHHHTTSSSEECSCCBCC-HHH
T ss_pred HCCCCCEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCC-HHH
T ss_conf 20589599998998899348999998887299999999999-6996699988989999999759988796623158-666
Q ss_pred HHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf 66655304702301356685356786344641234553565555665442013578543200555876640354522100
Q gi|254780342|r 91 IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170 (309)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (309)
. ........+......+++.... ...+.++.+|. ++.+|...+.... ..+... .+ .+
T Consensus 84 ------~-~~~~fs~~~~~~~~~l~~~~~~-~~~~~~~~~l~-------~~~Igv~~gs~~~----~~l~~~-~~---~~ 140 (246)
T 3g41_A 84 ------Q-KEIALLPYYGDEVQELMVVSKR-SLETPVLPLTQ-------YSSVAVQTGTYQE----HYLLSQ-PG---IC 140 (246)
T ss_dssp ------H-TTSEEEEEECCCBCEEEEEEET-TCCSCSCCGGG-------SSCEEEETTSHHH----HHHHTS-TT---CC
T ss_pred ------C-CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-------CCEEEEEECCHHH----HHHHHC-CC---CE
T ss_conf ------0-3434342333334332112222-34444100123-------4058885153799----999838-87---53
Q ss_pred EECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 10366520189999999659936999412422320
Q gi|254780342|r 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205 (309)
Q Consensus 171 ~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~ 205 (309)
++.-. -..++..++.+|+.+++..+.+.....
T Consensus 141 ~~~~~---~~~~~~~~L~~GriD~~i~~~~~~~~~ 172 (246)
T 3g41_A 141 VRSFD---STLEVIMEVRYGKSPVAVLEPSVGRVV 172 (246)
T ss_dssp EEEES---CHHHHHHHHHTTSSSEEEECHHHHHHH
T ss_pred EEEEC---HHHHHHHHHHCCCCCHHHHCHHHHHHH
T ss_conf 89834---078788898759843113069999999