HHsearch results for GI: 254780342 and protein with PDBid: 3ix1_A

>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=98.74  E-value=1.3e-06  Score=61.35  Aligned_cols=200  Identities=11%  Similarity=0.105  Sum_probs=118.3

Q ss_pred             CCEEEECCCC---CHHH-HHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCE
Q ss_conf             8379942588---6999-99999999996106984899856-40578888514981399984046413566665530470
Q gi|254780342|r   26 TPVRFADTGW---TDIA-ATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSI  100 (309)
Q Consensus        26 ~~I~ig~~~w---te~~-v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~  100 (309)
                      ++|+|+ .+|   ++.. ..-..-+-..|+. |.+|++... +.....++|.+|++|+......    ...........+
T Consensus         3 ~~v~~~-l~w~p~~~~ap~~vA~~~G~f~~~-Gl~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~----~~~~~~~~g~~~   76 (302)
T 3ix1_A            3 ETVEVM-LDWYPNAVHTFLYVAIENGYFAEE-GLDVDIVFPTNPTDPIQLTASGAIPLALSYQP----DVILARSKDLPV   76 (302)
T ss_dssp             EEEEEE-CSSSCCGGGHHHHHHHHTTHHHHT-TEEEEEECCSSTTHHHHHHHHTSCSEEEECHH----HHHHHHHTTCCE
T ss_pred             CCEEEE-ECCEECCCCHHHHHHHHCCHHHHC-CCEEEEEECCCCHHHHHHHHCCCCCEEEECHH----HHHHHHHCCCCE
T ss_conf             717998-488766064999999988938984-97189995798059999997799898997758----999987334885


Q ss_pred             EEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf             23013566853567863446412345535655556654420135785432005558766403545221001036652018
Q gi|254780342|r  101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF  180 (309)
Q Consensus       101 ~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~  180 (309)
                      ...+........++.++.   ..++++++||       +++.+|...+..........++..|+.....+++.....   
T Consensus        77 ~~~~~~~~~~~~~l~~~~---~~~i~~~~DL-------kGK~v~~~~~~~~~~~l~~~l~~~Gl~~~~v~~v~~~~~---  143 (302)
T 3ix1_A           77 VSVASVVRSPLNHVMFLA---EQDFDSPADL-------VGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDVGFE---  143 (302)
T ss_dssp             EEEEEEECSCCEEEEEEG---GGCCSSGGGG-------TTSEEEECSCTTHHHHHHHHHHHTTCCGGGCEEEECTTC---
T ss_pred             EEEEEEECCCCCEEEEEC---CCCCCCHHHH-------CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC---
T ss_conf             899854058973699853---7798887895-------676221789977899999999972899761178458843---


Q ss_pred             HHHHHHHHCCCCEEEEE-ECCC-HHH-HC--CCCEEECCCCCCCCCCHHH-HHHHHCHHHHHHCHHHH-HHHHHC
Q ss_conf             99999996599369994-1242-232-01--5851400786546778658-35442777787488999-998740
Q gi|254780342|r  181 SQIRRDQRNNIPAVFLS-WEPH-PIN-SD--LNIHYLPGGEEISGFGEAS-VYTVVRSDYLDKCPNIS-RLLKNI  248 (309)
Q Consensus       181 a~l~~A~~~~~~~v~~~-wsp~-~~~-~~--~dl~~Ledp~~~~~~p~~~-~~~vv~~~~~~~~P~~~-~~L~~~  248 (309)
                        ...|+.+|+.+.+.. |.+. +.. ..  .++..+... + ++.|.+. ...+++++|+++||++. +|++.+
T Consensus       144 --~~~al~~G~iDa~~~~~~~~~~~~~~~~g~~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~p~~v~~f~~A~  214 (302)
T 3ix1_A          144 --LGASIVSGRADAVVGTYINHEYPVLKHEGHDISYFNPV-D-YGVPEYDELVLISNEAYVEESGEVLAAFWRAA  214 (302)
T ss_dssp             --HHHHHHHSSSSEEEEEETTTHHHHHHHTTCCEEEECGG-G-TTCCCCCSEEEEEEHHHHHHCHHHHHHHHHHH
T ss_pred             --HHHHHHCCCCCEECCCCCCCHHHHHHHCCCCCCCCCHH-H-CCCCCCCCCCEECCHHHHHHCHHHHHHHHHHH
T ss_conf             --89999859977000654660899998628763222588-7-09888766311046999987969999999999