HHsearch results for GI: 254780342 and protein with PDBid: 3ksx_A
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=99.41 E-value=7.8e-11 Score=88.86 Aligned_cols=207 Identities=14% Similarity=0.132 Sum_probs=134.9
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 583458837994258869999999999999610-6984899856-40578888514981399984046413566665530
Q gi|254780342|r 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEI-LGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE 97 (309)
Q Consensus 20 ~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~-lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~ 97 (309)
+.+++..+||||........+++.-- ..+|+. .|++|+.... +...+.++|.+|++|+..-...+.... ....
T Consensus 23 a~a~~~~~lrIg~~~~~~~~~va~~~-G~f~~~~~~~~v~~~~~~~g~~~~~al~sG~~D~~~~~~~~~~~~----~~~G 97 (324)
T 3ksx_A 23 ALAAEPAQLRIGYQKAVSSLVLAKQH-RLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPPLFA----QAAG 97 (324)
T ss_dssp --CCCCSEEEEEEETTCHHHHHHHHH-THHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEEEESHHHHHH----HHTT
T ss_pred CCCCCCCEEEEEEECCCCHHHHHHHH-CHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHH----HHCC
T ss_conf 55589975999961686579999984-869783899827999789779999999849928896465999999----9879
Q ss_pred CCEEEECCCCCC-CEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 470230135668-5356786344641234553565555665442013578543200555876640354522100103665
Q gi|254780342|r 98 GSIKLVAENLQG-AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176 (309)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~ 176 (309)
..+..++..... ....+.++. ..+|++++|| +++.+|.+.+..........++..|+.....+++..+.
T Consensus 98 ~~~~~v~~~~~~~~~~~iv~~~---~s~i~s~~DL-------kGK~v~v~~gs~~~~~l~~~L~~~Gl~~~dV~~v~~~~ 167 (324)
T 3ksx_A 98 ADLLYVGWVPPTPKAETILVPS---KSALRTVADL-------KGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSP 167 (324)
T ss_dssp CCEEEEEEECCCGGGEEEEEET---TCSCCSGGGG-------TTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCH
T ss_pred CCEEEEEEEECCCCCEEEEEEC---CCCCCCHHHH-------CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEECCH
T ss_conf 9859999896379842899808---9999997893-------89989875687306799999998799732354012582
Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCHHHHCCC--CEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHH-HHHHC
Q ss_conf 20189999999659936999412422320158--51400786546778658354427777874889999-98740
Q gi|254780342|r 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLN--IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR-LLKNI 248 (309)
Q Consensus 177 ~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~d--l~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~-~L~~~ 248 (309)
.+...|+.+|+.+++..|.|........ .+++-++.+.. ++ ....+++++|.++||++.+ |++.+
T Consensus 168 ----~~~~~al~~G~vDa~~~~~p~~~~~~~~g~~~~l~~~~~~~--~~-~~~~~~~~~~~~~~p~~v~~fl~a~ 235 (324)
T 3ksx_A 168 ----ANARAAFAAGQVDAWAIWDPWYSALTLDGSARLLANGEGLG--LT-GGFFLSSRRYATAWGPFVQQVMGTL 235 (324)
T ss_dssp ----HHHHHHHHTTCCSEEEEETTHHHHHHHTTSEEEEEESTTSC--CC-CEEEEEEHHHHHHTHHHHHHHHHHH
T ss_pred ----HHHHHHHHCCCCCEEEECCHHHHHHHHCCCCEEEECCCCCC--CC-CCEEEECHHHHHHCHHHHHHHHHHH
T ss_conf ----66666653135009998157999999749948997144468--76-6438985888867989999999999