HHsearch results for GI: 254780342 and protein with PDBid: 3muq_A

>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=96.70  E-value=0.024  Score=33.68  Aligned_cols=183  Identities=11%  Similarity=-0.015  Sum_probs=86.9

Q ss_pred             CCCCEEEECCCCCHHH-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf             5883799425886999-999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r   24 SCTPVRFADTGWTDIA-ATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL  102 (309)
Q Consensus        24 ~~~~I~ig~~~wte~~-v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~  102 (309)
                      .++.|+|+...-+... .+..|... .|+++|++|++..+++..+...+.++..|++...- +   .........+....
T Consensus         3 ~a~~~~~~~~~S~~~sgl~~~l~~~-Fek~tGi~V~~~~g~sg~l~~~~~~~~~d~~~~~~-~---~~~~~~~~~~~~~~   77 (237)
T 3muq_A            3 AAEHVRLATTTSTYHSGLLDYLLPQ-FEKDTGYKVDVIAAGTGKALKMGENGDVDLVMTHA-P---KAEGTFVEKGYGVL   77 (237)
T ss_dssp             --CEEEEEEEHHHHHHTHHHHHHHH-HHHHHCCEEEEEEECHHHHHHHHHTTSSSEEEECC-H---HHHHHHHHTTSEEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHH-HHHHHCCEEEEEECCCHHHHHHHHCCCCCEEEECC-H---HHHHHHHHCCCCCC
T ss_conf             7872799997587402279999999-99985987999977849999998668987588517-1---77898875477655


Q ss_pred             ECCCCCCCEEEEEEEHHHHHCC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHHCCCCCCCEEEECCCCCC
Q ss_conf             0135668535678634464123---455356555566544201357854320055587-664035452210010366520
Q gi|254780342|r  103 VAENLQGAKYMLAVNDVGFALG---IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD-MINNNKFSLKGFRLIEASELA  178 (309)
Q Consensus       103 ~~~~~~~~~~~~~v~~~~~~~~---i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~s~~~  178 (309)
                      .... ........+........   ...+.++.+.  .....+....+.......... .................. ..
T Consensus        78 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  153 (237)
T 3muq_A           78 PRKL-MYNDFVIVGPKADPAKIKDDESVLDVFKEI--ANKNATFISRGDDSGTHKKEMGFWAQTKIEPNFGGYRSVG-QG  153 (237)
T ss_dssp             EEEE-EEEEEEEEECTTCTTCCTTCSSHHHHHHHH--HHTTCCEEECCSCCHHHHHHHHHHHHHTCCSCSTTEEECC-CC
T ss_pred             CCEE-EEEEEEEEEECCCCCCCCCCCHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHC-CC
T ss_conf             5234-541002787614631123451256665411--2454279877766378999999998725651034676521-01


Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCC
Q ss_conf             18999999965993699941242232015851400786
Q gi|254780342|r  179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE  216 (309)
Q Consensus       179 ~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~  216 (309)
                       ..........+..+++..|..+..........+..|.
T Consensus       154 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  190 (237)
T 3muq_A          154 -MGPTLNMASEMQGYTMSDRGTWLAYQNKLDLEILFQG  190 (237)
T ss_dssp             -HHHHHHHHHHTTCBEEEEHHHHHHHGGGCSCEEEECC
T ss_pred             -HHHHHHHCCCCCEEEEEHHHHHHHHCCCCCEEEECCC
T ss_conf             -7888744145630045114578875268742796478