HHsearch results for GI: 254780342 and protein with PDBid: 3muq_A
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=96.70 E-value=0.024 Score=33.68 Aligned_cols=183 Identities=11% Similarity=-0.015 Sum_probs=86.9
Q ss_pred CCCCEEEECCCCCHHH-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 5883799425886999-999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 24 SCTPVRFADTGWTDIA-ATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~-v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
.++.|+|+...-+... .+..|... .|+++|++|++..+++..+...+.++..|++...- + .........+....
T Consensus 3 ~a~~~~~~~~~S~~~sgl~~~l~~~-Fek~tGi~V~~~~g~sg~l~~~~~~~~~d~~~~~~-~---~~~~~~~~~~~~~~ 77 (237)
T 3muq_A 3 AAEHVRLATTTSTYHSGLLDYLLPQ-FEKDTGYKVDVIAAGTGKALKMGENGDVDLVMTHA-P---KAEGTFVEKGYGVL 77 (237)
T ss_dssp --CEEEEEEEHHHHHHTHHHHHHHH-HHHHHCCEEEEEEECHHHHHHHHHTTSSSEEEECC-H---HHHHHHHHTTSEEE
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHH-HHHHHCCEEEEEECCCHHHHHHHHCCCCCEEEECC-H---HHHHHHHHCCCCCC
T ss_conf 7872799997587402279999999-99985987999977849999998668987588517-1---77898875477655
Q ss_pred ECCCCCCCEEEEEEEHHHHHCC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHHCCCCCCCEEEECCCCCC
Q ss_conf 0135668535678634464123---455356555566544201357854320055587-664035452210010366520
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGFALG---IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD-MINNNKFSLKGFRLIEASELA 178 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~~~~---i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~s~~~ 178 (309)
.... ........+........ ...+.++.+. .....+....+.......... .................. ..
T Consensus 78 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (237)
T 3muq_A 78 PRKL-MYNDFVIVGPKADPAKIKDDESVLDVFKEI--ANKNATFISRGDDSGTHKKEMGFWAQTKIEPNFGGYRSVG-QG 153 (237)
T ss_dssp EEEE-EEEEEEEEECTTCTTCCTTCSSHHHHHHHH--HHTTCCEEECCSCCHHHHHHHHHHHHHTCCSCSTTEEECC-CC
T ss_pred CCEE-EEEEEEEEEECCCCCCCCCCCHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHC-CC
T ss_conf 5234-541002787614631123451256665411--2454279877766378999999998725651034676521-01
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCC
Q ss_conf 18999999965993699941242232015851400786
Q gi|254780342|r 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216 (309)
Q Consensus 179 ~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~ 216 (309)
..........+..+++..|..+..........+..|.
T Consensus 154 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 190 (237)
T 3muq_A 154 -MGPTLNMASEMQGYTMSDRGTWLAYQNKLDLEILFQG 190 (237)
T ss_dssp -HHHHHHHHHHTTCBEEEEHHHHHHHGGGCSCEEEECC
T ss_pred -HHHHHHHCCCCCEEEEEHHHHHHHHCCCCCEEEECCC
T ss_conf -7888744145630045114578875268742796478