HHsearch results for GI: 254780342 and protein with PDBid: 3oxn_A

>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.82  E-value=0.067  Score=30.74  Aligned_cols=192  Identities=10%  Similarity=-0.067  Sum_probs=104.6

Q ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf             45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r   23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL  102 (309)
Q Consensus        23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~  102 (309)
                      ....+++||..++....++..++..+-++.=|..+++..+++..+.+.|..|++|+....- +.....         +..
T Consensus        16 ~~~~~~rI~~~~~~~~~~lp~ll~~l~~~~P~v~i~l~~~~~~~~~~~L~~g~iDl~I~~~-~~~~~~---------l~~   85 (241)
T 3oxn_A           16 QCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRP-TGPVEP---------LRS   85 (241)
T ss_dssp             SCCCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECC-SSCCTT---------EEE
T ss_pred             CCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECC-CCCCCC---------CCC
T ss_conf             0686899997379999999999999999886928999979879999999759854222026-787410---------113


Q ss_pred             ECCCCCCCEEEEEEEHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHH
Q ss_conf             013566853567863446412-3455356555566544201357854320055587664035452210010366520189
Q gi|254780342|r  103 VAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS  181 (309)
Q Consensus       103 ~~~~~~~~~~~~~v~~~~~~~-~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a  181 (309)
                        .........++++..-+.. .-.++.++.+.      ..+...............+. .++ .....+...+-    .
T Consensus        86 --~~l~~~~~v~v~~~~HPl~~~~~t~~dl~~~------~~v~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~s~----~  151 (241)
T 3oxn_A           86 --EILGRVGVLCLLSKQHPLANQEMSLDDYLSH------PHAMIAISDGVKALIEQALI-DKP-QRKMVLRAYHL----E  151 (241)
T ss_dssp             --EEEECCCEEEEEETTSGGGGSCCCHHHHHTS------EEEECSCCHHHHHHHHHHST-TSC-CCEEEEECSST----H
T ss_pred             --CCCCCCCCEEECCCCCHHHHCCCCHHHHHHC------CEEEEECCCCCCHHHHHHHH-HCC-CCCCEEEECCH----H
T ss_conf             --5432236402237665032025889999529------86999579986239999999-679-99855996789----9


Q ss_pred             HHHHHHHCCCCEE-EEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHH
Q ss_conf             9999996599369-994124223201585140078654677865835442777787488999
Q gi|254780342|r  182 QIRRDQRNNIPAV-FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS  242 (309)
Q Consensus       182 ~l~~A~~~~~~~v-~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~  242 (309)
                      .+...++.+..+. ++...........+++.++-|...   |+..+. ++|..-....|...
T Consensus       152 ~~~~lv~~~~~i~ilP~~~~~~~~~~~~L~~~plp~~~---p~~~~~-l~Wh~~~~~~pa~~  209 (241)
T 3oxn_A          152 AALAIVDTLPIIITVPADLAYLVAERYDLVVKPLPFQF---TPFDYS-MIWHARCEHSPAQE  209 (241)
T ss_dssp             HHHHHC--CCCEEEEEHHHHHHHHHHTTEEEECCSSCC---CCCCEE-EEEEGGGTTCHHHH
T ss_pred             HHHHHHHCCCEEEEHHHHHHHHHHHCCCEEEECCCCCC---CCEEEE-EEECCCCCCCHHHH
T ss_conf             99999975997998799999988653996998489998---976899-99799988998999