HHsearch results for GI: 254780342 and protein with PDBid: 3oxn_A
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.82 E-value=0.067 Score=30.74 Aligned_cols=192 Identities=10% Similarity=-0.067 Sum_probs=104.6
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
....+++||..++....++..++..+-++.=|..+++..+++..+.+.|..|++|+....- +..... +..
T Consensus 16 ~~~~~~rI~~~~~~~~~~lp~ll~~l~~~~P~v~i~l~~~~~~~~~~~L~~g~iDl~I~~~-~~~~~~---------l~~ 85 (241)
T 3oxn_A 16 QCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRP-TGPVEP---------LRS 85 (241)
T ss_dssp SCCCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECC-SSCCTT---------EEE
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECC-CCCCCC---------CCC
T ss_conf 0686899997379999999999999999886928999979879999999759854222026-787410---------113
Q ss_pred ECCCCCCCEEEEEEEHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHH
Q ss_conf 013566853567863446412-3455356555566544201357854320055587664035452210010366520189
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~~~-~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a 181 (309)
.........++++..-+.. .-.++.++.+. ..+...............+. .++ .....+...+- .
T Consensus 86 --~~l~~~~~v~v~~~~HPl~~~~~t~~dl~~~------~~v~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~s~----~ 151 (241)
T 3oxn_A 86 --EILGRVGVLCLLSKQHPLANQEMSLDDYLSH------PHAMIAISDGVKALIEQALI-DKP-QRKMVLRAYHL----E 151 (241)
T ss_dssp --EEEECCCEEEEEETTSGGGGSCCCHHHHHTS------EEEECSCCHHHHHHHHHHST-TSC-CCEEEEECSST----H
T ss_pred --CCCCCCCCEEECCCCCHHHHCCCCHHHHHHC------CEEEEECCCCCCHHHHHHHH-HCC-CCCCEEEECCH----H
T ss_conf --5432236402237665032025889999529------86999579986239999999-679-99855996789----9
Q ss_pred HHHHHHHCCCCEE-EEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHH
Q ss_conf 9999996599369-994124223201585140078654677865835442777787488999
Q gi|254780342|r 182 QIRRDQRNNIPAV-FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242 (309)
Q Consensus 182 ~l~~A~~~~~~~v-~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~ 242 (309)
.+...++.+..+. ++...........+++.++-|... |+..+. ++|..-....|...
T Consensus 152 ~~~~lv~~~~~i~ilP~~~~~~~~~~~~L~~~plp~~~---p~~~~~-l~Wh~~~~~~pa~~ 209 (241)
T 3oxn_A 152 AALAIVDTLPIIITVPADLAYLVAERYDLVVKPLPFQF---TPFDYS-MIWHARCEHSPAQE 209 (241)
T ss_dssp HHHHHC--CCCEEEEEHHHHHHHHHHTTEEEECCSSCC---CCCCEE-EEEEGGGTTCHHHH
T ss_pred HHHHHHHCCCEEEEHHHHHHHHHHHCCCEEEECCCCCC---CCEEEE-EEECCCCCCCHHHH
T ss_conf 99999975997998799999988653996998489998---976899-99799988998999