Query gi|254780342|ref|YP_003064755.1| substrate-binding region of ABC-type glycine betaine transport system [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 309
No_of_seqs 121 out of 1546
Neff 8.5
Searched_HMMs 23785
Date Mon May 30 08:50:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780342.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rin_A Putative glycine betain 100.0 0 0 462.1 24.0 288 20-308 1-290 (298)
2 3l6g_A Betaine ABC transporter 100.0 0 0 375.6 21.8 255 26-291 2-256 (256)
3 1r9l_A Glycine betaine-binding 100.0 0 0 350.9 19.5 269 19-289 1-302 (309)
4 3o66_A Glycine betaine/carniti 100.0 8.4E-45 0 309.7 16.6 250 20-280 3-278 (282)
5 1sw5_A Osmoprotection protein 100.0 3.8E-43 0 299.1 15.9 247 22-281 2-272 (275)
6 2b4l_A Glycine betaine-binding 100.0 2.2E-38 9.1E-43 268.1 12.2 165 130-298 2-166 (268)
7 2b4l_A Glycine betaine-binding 99.8 3.6E-20 1.5E-24 149.6 10.7 110 20-133 159-268 (268)
8 3ksx_A Nitrate transport prote 99.4 7.8E-11 3.3E-15 88.9 19.3 207 20-248 23-235 (324)
9 2x26_A Periplasmic aliphatic s 99.4 7.8E-12 3.3E-16 95.4 12.0 202 25-248 2-209 (308)
10 1p99_A Hypothetical protein PG 99.2 1.4E-10 6.1E-15 87.1 8.8 224 14-282 27-273 (295)
11 2de3_A Dibenzothiophene desulf 99.0 6.4E-09 2.7E-13 76.4 13.3 209 22-247 14-275 (365)
12 3ix1_A N-formyl-4-amino-5-amin 98.7 1.3E-06 5.6E-11 61.3 16.2 200 26-248 3-214 (302)
13 1xs5_A 29 kDa protein, membran 98.7 2.6E-07 1.1E-11 66.0 10.7 197 25-248 2-219 (241)
14 3k2d_A ABC-type metal ION tran 98.7 2.7E-07 1.1E-11 65.8 10.7 204 23-248 3-223 (237)
15 3gxa_A Outer membrane lipoprot 98.6 1.4E-06 6E-11 61.1 13.0 215 17-261 14-250 (275)
16 3hn0_A Nitrate transport prote 98.4 5.4E-06 2.3E-10 57.4 12.2 191 24-247 3-202 (283)
17 2g29_A Nitrate transport prote 98.4 1.7E-05 7.1E-10 54.1 13.4 218 24-248 31-263 (417)
18 1us5_A Putative GLUR0 ligand b 98.2 5.4E-05 2.3E-09 50.9 12.8 194 1-215 1-210 (314)
19 2v25_A Major cell-binding fact 98.2 3.3E-05 1.4E-09 52.3 11.1 215 1-248 3-242 (259)
20 3ir1_A Outer membrane lipoprot 98.0 0.00015 6.2E-09 48.0 12.4 207 26-259 1-226 (245)
21 3n5l_A Binding protein compone 98.0 0.00021 8.6E-09 47.1 12.4 176 24-214 2-198 (310)
22 2hzl_A Trap-T family sorbitol/ 97.9 0.00075 3.2E-08 43.4 14.5 254 22-307 28-338 (365)
23 2ozz_A Hypothetical protein YH 97.9 0.00049 2E-08 44.7 12.6 206 29-268 18-228 (231)
24 2nxo_A Hypothetical protein SC 97.8 5E-05 2.1E-09 51.1 7.4 248 22-308 3-264 (291)
25 2i49_A Bicarbonate transporter 97.7 0.0009 3.8E-08 42.9 11.6 216 24-247 34-270 (429)
26 2qry_A Thiamine-binding peripl 97.4 0.0046 1.9E-07 38.3 12.4 223 20-261 17-281 (330)
27 2zzv_A ABC transporter, solute 97.2 0.014 5.9E-07 35.2 17.7 244 19-289 27-329 (361)
28 2o1m_A Probable amino-acid ABC 97.0 0.0028 1.2E-07 39.7 7.7 197 20-247 10-222 (258)
29 2fyi_A HTH-type transcriptiona 96.8 0.025 1E-06 33.6 11.4 207 23-258 11-224 (228)
30 3mpk_A Virulence sensor protei 96.8 0.025 1E-06 33.6 11.0 201 24-261 30-249 (267)
31 1xt8_A Putative amino-acid tra 96.7 0.0098 4.1E-07 36.2 8.6 148 26-202 44-205 (292)
32 3muq_A Uncharacterized conserv 96.7 0.024 9.9E-07 33.7 10.5 183 24-216 3-190 (237)
33 1twy_A ABC transporter, peripl 96.6 0.004 1.7E-07 38.7 6.0 80 1-82 3-83 (290)
34 1amf_A Molybdate transport pro 96.5 0.038 1.6E-06 32.3 10.3 217 26-257 3-224 (233)
35 1atg_A MODA, periplasmic molyb 96.3 0.056 2.4E-06 31.2 11.8 212 28-256 2-220 (231)
36 2vha_A Periplasmic binding tra 96.3 0.041 1.7E-06 32.1 9.9 163 53-248 61-229 (287)
37 3del_B Arginine binding protei 96.3 0.0065 2.7E-07 37.3 5.6 159 16-203 1-170 (242)
38 3kn3_A Putative periplasmic pr 96.3 0.061 2.6E-06 31.0 12.6 107 24-136 3-111 (242)
39 3jv9_A OXYR, transcriptional r 96.3 0.038 1.6E-06 32.4 9.4 59 25-83 3-61 (219)
40 3gzg_A Molybdate-binding perip 96.2 0.067 2.8E-06 30.7 11.6 216 24-258 21-245 (253)
41 2iee_A ORF2, probable ABC tran 96.0 0.017 7E-07 34.7 6.4 189 25-248 20-227 (271)
42 3hv1_A Polar amino acid ABC up 95.9 0.05 2.1E-06 31.6 8.6 194 23-247 18-228 (268)
43 3g41_A Amino acid ABC transpor 95.8 0.03 1.3E-06 33.0 7.1 156 22-205 6-172 (246)
44 2pvu_A ARTJ; basic amino acid 95.8 0.082 3.4E-06 30.2 9.3 165 24-216 40-219 (272)
45 3b50_A Sialic acid-binding per 95.6 0.12 5.1E-06 29.0 12.2 246 27-303 4-301 (310)
46 3h7m_A Sensor protein; histidi 95.5 0.13 5.6E-06 28.8 10.3 188 22-247 7-210 (234)
47 3lr1_A Tungstate ABC transport 95.5 0.14 5.7E-06 28.7 12.2 58 24-82 3-61 (236)
48 2vpn_A Periplasmic substrate b 95.3 0.15 6.3E-06 28.5 11.6 238 38-307 15-307 (316)
49 3fxq_A LYSR type regulator of 95.1 0.18 7.4E-06 28.0 11.2 197 25-248 91-291 (305)
50 3oxn_A Putative transcriptiona 94.8 0.067 2.8E-06 30.7 6.3 192 23-242 16-209 (241)
51 1zbm_A Hypothetical protein AF 94.6 0.23 9.6E-06 27.3 9.3 222 24-279 8-240 (280)
52 2pt1_A Iron transport protein; 94.3 0.16 6.5E-06 28.4 7.1 228 20-262 13-286 (334)
53 1al3_A Cys regulon transcripti 94.2 0.29 1.2E-05 26.6 11.9 205 22-255 89-300 (324)
54 2hxw_A Major antigenic peptide 94.2 0.12 5E-06 29.1 6.3 208 28-256 3-222 (237)
55 2q88_A EHUB, putative ABC tran 94.1 0.15 6.4E-06 28.4 6.8 156 24-202 11-177 (257)
56 1wdn_A GLNBP, glutamine bindin 93.8 0.16 6.9E-06 28.2 6.5 186 25-247 2-202 (226)
57 3c9h_A ABC transporter, substr 93.8 0.1 4.4E-06 29.5 5.5 78 1-81 1-93 (355)
58 1i6a_A OXYR, hydrogen peroxide 92.9 0.42 1.8E-05 25.6 7.4 193 26-248 5-203 (219)
59 3fzv_A Probable transcriptiona 92.1 0.59 2.5E-05 24.6 10.9 199 23-248 92-294 (306)
60 3omb_A Extracellular solute-bi 91.8 0.053 2.2E-06 31.4 1.7 41 41-81 56-101 (535)
61 2hpg_A ABC transporter, peripl 91.0 0.77 3.2E-05 23.8 14.5 238 21-289 4-307 (327)
62 3ecr_A Porphobilinogen deamina 91.0 0.77 3.2E-05 23.8 7.6 61 25-85 21-102 (364)
63 3fxb_A Trap dicarboxylate tran 90.8 0.8 3.4E-05 23.7 12.2 253 22-307 11-321 (326)
64 3ho7_A OXYR; beta-alpha-barrel 90.7 0.81 3.4E-05 23.7 13.2 195 25-248 10-210 (232)
65 3cvg_A Putative metal binding 89.2 0.38 1.6E-05 25.8 4.2 60 23-82 17-81 (294)
66 2noo_A NIKA, nickel-binding pe 89.2 1.1 4.5E-05 22.9 6.9 39 56-94 193-232 (502)
67 2pyy_A Ionotropic glutamate re 88.9 0.69 2.9E-05 24.1 5.3 151 25-203 2-163 (228)
68 2v84_A Spermidine/putrescine A 88.8 1.1 4.7E-05 22.8 6.3 57 20-80 19-78 (343)
69 2ql3_A Probable transcriptiona 88.7 0.63 2.7E-05 24.4 5.0 195 25-248 4-205 (209)
70 3e13_X Putative iron-uptake AB 88.4 1.2 5.1E-05 22.5 6.6 52 28-82 4-59 (322)
71 2grv_A LPQW; substrate-binding 88.3 1.2 5.1E-05 22.5 6.4 26 56-81 249-275 (621)
72 2hxr_A HTH-type transcriptiona 88.1 0.77 3.2E-05 23.8 5.1 196 23-248 27-225 (238)
73 3myu_A High affinity transport 87.9 0.87 3.7E-05 23.5 5.3 62 20-81 2-70 (344)
74 1lst_A Lysine, arginine, ornit 87.0 1.5 6.1E-05 22.0 10.1 153 26-204 4-167 (239)
75 1ixc_A CBNR, LYSR-type regulat 86.1 1.6 6.8E-05 21.7 6.5 195 23-248 88-288 (294)
76 2h98_A HTH-type transcriptiona 86.0 0.84 3.5E-05 23.6 4.4 197 23-248 87-289 (313)
77 1a99_A POTF, putrescine-bindin 85.5 0.49 2E-05 25.1 2.9 223 24-262 2-286 (344)
78 1xvx_A YFUA; periplasmic iron 85.1 1.8 7.7E-05 21.4 7.6 219 25-259 4-262 (312)
79 2o7i_A Oligopeptide ABC transp 84.9 1.9 7.8E-05 21.3 7.0 27 56-82 209-236 (592)
80 1zu0_A Chitin oligosaccharide 84.5 1.9 8.1E-05 21.3 7.3 27 56-82 194-221 (529)
81 2h9b_A HTH-type transcriptiona 84.5 1.9 7.9E-05 21.3 5.5 216 23-282 87-310 (312)
82 1vr5_A Oligopeptide ABC transp 84.2 2 8.4E-05 21.2 7.4 26 56-81 212-238 (547)
83 3kzg_A Arginine 3RD transport 83.7 2.1 8.8E-05 21.0 11.2 200 39-282 28-234 (237)
84 1sbp_A Sulfate-binding protein 83.5 2.1 8.9E-05 21.0 8.8 190 51-257 30-254 (310)
85 1gtk_A Porphobilinogen deamina 82.6 2.3 9.6E-05 20.8 7.5 59 25-83 3-82 (313)
86 2pfz_A Putative exported prote 81.7 2.5 0.0001 20.5 15.8 231 41-308 18-300 (301)
87 1ii5_A Hypothetical protein SL 81.6 2.5 0.0001 20.5 7.3 153 23-202 1-166 (233)
88 1uth_A LYSR-type regulatory pr 81.0 2.4 0.0001 20.6 5.0 191 24-241 103-295 (315)
89 3i6v_A Periplasmic His/Glu/Gln 79.8 2.2 9.4E-05 20.8 4.5 179 25-247 4-197 (232)
90 2pfy_A Putative exported prote 79.0 3 0.00013 20.0 18.3 245 26-306 2-299 (301)
91 1pb7_A N-methyl-D-aspartate re 78.4 3.2 0.00013 19.8 8.3 173 25-214 40-243 (292)
92 2a5s_A N-methyl-D-aspartate re 78.1 3.2 0.00014 19.8 6.3 158 40-215 60-235 (284)
93 2esn_A Probable transcriptiona 77.9 3.3 0.00014 19.8 6.7 199 23-248 98-301 (310)
94 2qpq_A Protein BUG27; alpha/be 77.1 3.4 0.00014 19.6 9.4 251 26-289 8-294 (301)
95 2f5x_A BUGD; periplasmic bindi 75.5 3.8 0.00016 19.3 14.1 250 25-289 16-305 (312)
96 3fd3_A Chromosome replication 75.4 1.8 7.6E-05 21.4 3.0 160 26-212 2-167 (208)
97 1nnf_A Iron-utilization peripl 68.2 5.5 0.00023 18.3 5.9 211 36-261 8-261 (309)
98 1dpe_A Dipeptide-binding prote 67.7 5.7 0.00024 18.2 4.8 36 249-285 433-468 (507)
99 1pot_A POTD, spermidine/putres 66.4 3.8 0.00016 19.3 3.0 74 184-262 192-268 (325)
100 2dvz_A BUGE, putative exported 64.9 6.4 0.00027 17.9 15.5 252 25-289 18-307 (314)
101 3g3k_A Glutamate receptor, ion 64.6 6.5 0.00027 17.8 4.6 59 24-83 2-90 (259)
102 2voz_A FUTA2, periplasmic iron 64.3 6.6 0.00028 17.8 5.3 56 19-82 27-86 (346)
103 1f7u_A Arginyl-tRNA synthetase 60.2 7.3 0.00031 17.5 3.5 50 21-74 151-202 (607)
104 3fnr_A Arginyl-tRNA synthetase 58.6 8.2 0.00035 17.1 3.8 47 21-71 38-86 (464)
105 3o6p_A Peptide ABC transporter 58.5 8.3 0.00035 17.1 6.8 28 54-81 128-155 (229)
106 3kbr_A Cyclohexadienyl dehydra 54.4 9.6 0.00041 16.7 4.9 154 25-203 14-178 (239)
107 2czl_A Hypothetical protein TT 52.5 10 0.00043 16.5 4.9 54 26-82 2-57 (272)
108 3m8u_A Heme-binding protein A; 51.4 11 0.00045 16.4 6.0 27 56-82 215-242 (522)
109 1jet_A OPPA, oligo-peptide bin 51.4 11 0.00045 16.4 8.6 26 57-82 221-247 (517)
110 2zue_A Arginyl-tRNA synthetase 51.2 11 0.00045 16.4 3.1 46 22-71 128-175 (629)
111 1mqi_A Glutamate receptor 2; G 49.2 12 0.00049 16.2 3.5 83 39-133 34-129 (263)
112 2v3u_A Glutamate receptor delt 48.3 12 0.0005 16.1 4.3 58 25-83 2-86 (265)
113 1iq0_A Arginyl-tRNA synthetase 47.9 11 0.00046 16.4 2.8 46 20-69 110-157 (592)
114 2wol_A ORF15, clavulanic acid 46.6 13 0.00053 15.9 4.4 28 56-83 248-276 (562)
115 1ydy_A Glycerophosphoryl diest 45.7 9.7 0.00041 16.7 2.2 42 6-47 10-55 (356)
116 2k89_A PLA2P, PLAP, phospholip 42.7 15 0.00061 15.5 3.1 14 267-280 39-52 (80)
117 2elh_A CG11849-PA, LD40883P; s 38.8 17 0.0007 15.1 5.7 39 249-289 22-60 (87)
118 2p3y_A Hypothetical protein VP 36.4 0.98 4.1E-05 23.2 -4.0 17 1-17 1-17 (491)
119 1y9u_A Putative iron binding p 36.2 18 0.00077 14.9 4.3 53 26-82 6-62 (323)
120 2gtq_A Aminopeptidase N; alani 35.3 18 0.00074 15.0 2.2 71 238-309 691-769 (867)
121 1ccw_A Protein (glutamate muta 34.7 19 0.00081 14.7 3.6 66 24-90 2-70 (137)
122 2a3m_A COG3005: nitrate/TMAO r 32.5 11 0.00045 16.4 0.7 16 1-16 1-16 (130)
123 2k0m_A Uncharacterized protein 32.3 21 0.00089 14.5 2.4 49 24-73 3-51 (104)
124 1uqw_A Putative binding protei 32.2 21 0.00089 14.5 7.0 26 56-81 214-240 (509)
125 3k4u_A Binding component of AB 30.2 23 0.00096 14.3 4.9 189 25-247 4-208 (245)
126 2z8f_A Galacto-N-biose/lacto-N 30.0 23 0.00097 14.2 10.2 122 17-140 5-165 (412)
127 1yae_A Glutamate receptor, ion 29.4 24 0.00099 14.2 4.0 59 24-83 11-99 (312)
128 1y0g_A Protein YCEI; lipid bin 29.3 9.3 0.00039 16.8 -0.0 22 1-22 1-22 (191)
129 1vfg_A A-adding enzyme, poly A 28.3 24 0.001 14.2 1.9 49 44-93 1-49 (390)
130 2kyr_A Fructose-like phosphotr 27.4 5.7 0.00024 18.2 -1.4 33 29-61 8-43 (111)
131 2q2k_A Hypothetical protein; p 26.4 27 0.0011 13.8 2.4 34 235-268 33-69 (70)
132 2rc8_A Glutamate [NMDA] recept 26.0 27 0.0011 13.8 2.6 41 41-82 72-123 (294)
133 1xoc_A Oligopeptide-binding pr 25.9 27 0.0011 13.8 7.4 25 57-81 217-242 (520)
134 3h87_C Putative uncharacterize 25.5 28 0.0012 13.7 2.2 47 229-276 26-72 (73)
135 3mr8_P 30S ribosomal protein S 25.3 19 0.0008 14.8 1.0 23 280-307 52-74 (83)
136 1mvo_A PHOP response regulator 23.6 30 0.0013 13.5 5.0 51 38-90 12-63 (136)
137 3ebh_A PFA-M1, M1 family amino 23.5 30 0.0013 13.5 3.4 57 250-308 730-789 (889)
138 2xd3_A MALX, maltose/maltodext 23.2 31 0.0013 13.4 9.3 58 22-81 31-93 (416)
139 2b6d_A Lactotransferrin; compl 22.9 31 0.0013 13.4 6.7 34 48-81 19-53 (345)
140 2w5v_A Alkaline phosphatase; p 22.8 22 0.00092 14.4 0.9 42 1-42 3-52 (375)
141 1s8n_A Putative antiterminator 22.2 32 0.0013 13.3 5.2 71 18-91 4-75 (205)
142 2zzs_A Cytochrome C554; C-type 21.6 17 0.00071 15.1 0.1 15 1-15 1-15 (103)
143 3hht_A NitrIle hydratase alpha 20.9 34 0.0014 13.1 4.4 19 139-157 123-141 (216)
144 2r48_A Phosphotransferase syst 20.4 7.7 0.00033 17.3 -1.8 31 30-60 6-39 (106)
145 2r4q_A Phosphotransferase syst 20.4 5 0.00021 18.5 -2.8 32 30-61 6-40 (106)
No 1
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=100.00 E-value=0 Score=462.12 Aligned_cols=288 Identities=49% Similarity=0.895 Sum_probs=275.8
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCC
Q ss_conf 58345883799425886999999999999961069848998564057888851498139998404641356666553047
Q gi|254780342|r 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS 99 (309)
Q Consensus 20 ~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~ 99 (309)
+.|++++||+||+++|+|+.++++|++++||+ +||+|+++.++++++|+||++|+||+|+|||+|.....+.+...++.
T Consensus 1 a~p~~~~~V~ig~~~w~~~~~~a~i~~~vLe~-~Gy~Ve~~~~~~~~~~~al~~GdID~~~e~W~p~~~~~~~~~~~~~~ 79 (298)
T 2rin_A 1 AEPESCGTVRFSDVGWTDITATTATATTILEA-LGYETDVKVLSVPVTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKS 79 (298)
T ss_dssp ---CCTTEEEEECCSCHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHTTTS
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 98144897699746976699999999999998-69924898687099999998799808840466400166799886145
Q ss_pred EEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCH
Q ss_conf 02301356685356786344641234553565555665442013578543200555876640354522100103665201
Q gi|254780342|r 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179 (309)
Q Consensus 100 ~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~ 179 (309)
++.++.++.+...+++|+.+.++++|++|+||.++.+.|+++++||++++.+........+.|+|++.++++..+++++|
T Consensus 80 ~~~l~~~~~~~~~~~~v~~~~a~~~i~sisDL~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~ 159 (298)
T 2rin_A 80 VETVRENLAGAKYTLATNAKGAELGIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVESSEQGM 159 (298)
T ss_dssp EEEEEEEEEEEEEEEEEEHHHHHHTCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEEECCCHHHH
T ss_pred CEECCCCCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCEECCCCHHHH
T ss_conf 31114445686158875304444276747777653552377467225642224331456665026887654204646779
Q ss_pred HHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCC--CCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHH
Q ss_conf 89999999659936999412422320158514007865467--7865835442777787488999998740899899999
Q gi|254780342|r 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG--FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257 (309)
Q Consensus 180 ~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~--~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~ 257 (309)
++++++|+++|+|+++++|+|||++.+|+|++|+||++.|+ +|.+++.+++|++|+++||+++++|++++|++++|++
T Consensus 160 ~a~l~~A~~~~~~~v~~~w~p~~~~~~~dL~~LeDp~~~~~~~~~a~~v~~v~~~~~~~~~P~~~~~L~~~~l~~~~m~~ 239 (298)
T 2rin_A 160 LAQVARAEKSGDPIVFLGWEPHPMNANFKLTYLSGGDDVFGPNYGGATVHTNVRAGYTTECPNVDKLLQNLSFSLQMENE 239 (298)
T ss_dssp HHHHHHHHHTTCCCEEEEEESSTHHHHSCEEECBSCTTTTCHHHHEEEEEEEEETTHHHHSHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHH
T ss_conf 99999998468857998268732220376478058854468887620000287566777697999999967799999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 999998459998999999999859999987547545677137999998744
Q gi|254780342|r 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308 (309)
Q Consensus 258 l~~~v~~~g~~~~~vA~~wL~~n~~~~~~Wl~~~~~~~~~~~~~~~~~~~~ 308 (309)
||++|+++|++|++||++||++|+++|++||+||+|.||+|+.++||.+++
T Consensus 240 ln~~v~~~g~~~~~vA~~wL~~n~~~v~~Wl~g~~~~~~~d~~~~~~~~~~ 290 (298)
T 2rin_A 240 IMGKILNDGEDPEKAAAAWLKDNPQSIEPWLSGVATKDGGDGLAAVKAALG 290 (298)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHSGGGHHHHTTTCBCTTSSBHHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHCC
T ss_conf 999998649999999999999797999999668777777508999999749
No 2
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=100.00 E-value=0 Score=375.62 Aligned_cols=255 Identities=20% Similarity=0.332 Sum_probs=234.6
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECC
Q ss_conf 83799425886999999999999961069848998564057888851498139998404641356666553047023013
Q gi|254780342|r 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105 (309)
Q Consensus 26 ~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~ 105 (309)
++|+||+++|||++++++|++++||+ +||+||++.+++.++|+||++|+||+++|+|.|..+..+.... ++.++.++.
T Consensus 2 k~i~i~~~~wt~~~~~a~i~~~~Le~-~Gy~Ve~~~~~~~~~~~al~~G~iDi~~e~w~~~~~~~~~~~~-~~~~~~~~~ 79 (256)
T 3l6g_A 2 KKVDLVYMNWDSEVASINVLTQAMKE-HGFDVKTTALDNAVAWQTVANGQADGMVSAWLPNTHKTQWQKY-GKSVDLLGP 79 (256)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHH-TTEEEEEEECCHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHH-GGGEEEEEE
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHC-CCCEEECCC
T ss_conf 74899326984799999999999998-6994599878848999999879982985114324556667632-676588022
Q ss_pred CCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 56685356786344641234553565555665442013578543200555876640354522100103665201899999
Q gi|254780342|r 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185 (309)
Q Consensus 106 ~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~ 185 (309)
.+.++..+|+||+|. ++++++||.++... .+.|++++++++......+..+++ +..+.+..++.++|.+++++
T Consensus 80 ~~~~~~~g~~vp~~~---~i~si~dl~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~ 152 (256)
T 3l6g_A 80 NLKGAKVGFVVPSYM---NVNSIEDLTNQANK---TITGIEPGAGVMAASEKTLNSYDN-LKDWKLVPSSSGAMTVALGE 152 (256)
T ss_dssp EEEEEEEEEEEETTS---CCCBGGGCSSGGGG---EEECCCTTCHHHHHHHHHHTTCGG-GTTCEEECCCHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCC---CCCCHHHHHHHHHH---CCCCCCCCCCCCCCCHHHHHHCCC-CCCCEEECCCCHHHHHHHHH
T ss_conf 467862689875512---40257787656640---443678654424113767754034-54431204650778999999
Q ss_pred HHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99659936999412422320158514007865467786583544277778748899999874089989999999999845
Q gi|254780342|r 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265 (309)
Q Consensus 186 A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~~v~~~ 265 (309)
|+++|+|+++++|+|||++.+|+|++|+||++.+ +|++++.+++|++|+++||+++++|++++||+++|++||++|+ +
T Consensus 153 A~~~~~~~v~~~w~p~~~~~~~~l~~LeDp~~~~-~~~~~~~~v~~~~~~~~~P~~~~~L~~~~lt~~~~~~l~~~v~-~ 230 (256)
T 3l6g_A 153 AIKQHKDIVITGWSPHWMFNKYDLKYLADPKGTM-GTSENINTIVRKGLKKENPEAYKVLDKFNWTTKDMEAVMLDIQ-N 230 (256)
T ss_dssp HHHTTCCCCEEEEESCTHHHHSCEEECBCTTCTT-CCCEEEEEEEETTHHHHCHHHHHHHHHCCCCHHHHHHHHHHHH-T
T ss_pred HHHCCCCEEEEECCCCHHHHHCCEEEECCCCHHC-CCCCCCCEEECHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHH-C
T ss_conf 9764797799950670665408647816763001-3234553310134443298999999867899999999999998-5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99989999999998599999875475
Q gi|254780342|r 266 KQDRQFVGRTMLRTHPDLLKNWLIGV 291 (309)
Q Consensus 266 g~~~~~vA~~wL~~n~~~~~~Wl~~~ 291 (309)
|++|++||++||++|+++|++||+|.
T Consensus 231 g~~~~~vA~~wL~~n~~~~~~Wl~~~ 256 (256)
T 3l6g_A 231 GKTPEEAAKNWIKDHQKEVDKWFKGS 256 (256)
T ss_dssp TCCHHHHHHHHHHHTHHHHHGGGSCC
T ss_pred CCCHHHHHHHHHHHCHHHHHHHHCCC
T ss_conf 99999999999998979999986759
No 3
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=100.00 E-value=0 Score=350.92 Aligned_cols=269 Identities=17% Similarity=0.198 Sum_probs=237.6
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE-ECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 358345883799425886999999999999961069848998-5640578888514981399984046413566665530
Q gi|254780342|r 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK-LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE 97 (309)
Q Consensus 19 ~~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~-~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~ 97 (309)
+..|+++.||+||+++|||++++++|++++||+ +||+|+.+ .++++++|++|++|+||+|+|||+|.....+.+...+
T Consensus 1 ~~~p~~g~tv~~~~~~wte~~i~~ei~~~~Le~-~Gy~V~~~~~~~~~~~~~al~~G~iDi~~E~w~~~~~~~~~~~~~~ 79 (309)
T 1r9l_A 1 ADLPGKGITVNPVQSTITEETFQTLLVSRALEK-LGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGD 79 (309)
T ss_dssp CCCTTTTCEECEEECSCGGGHHHHHHHHHHHHH-TTCEECCCEECCHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGG
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCC
T ss_conf 998999988988417852899999999999998-6996475147873999999986997599844346100465643044
Q ss_pred CCEEEECCCCCCCEEEEEEEHHHHHC-CCCCHHHHHHHH--------HHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 47023013566853567863446412-345535655556--------654420135785432005558766403545221
Q gi|254780342|r 98 GSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYK--------KELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~i~~~~dl~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 168 (309)
+..+.++..+.+...+|+||.|+++. .+.++.++.+.. ..++++++||+++|.++.......+.|+|.. +
T Consensus 80 ~~~~~~~~~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ygl~~-~ 158 (309)
T 1r9l_A 80 KKFYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTN-T 158 (309)
T ss_dssp GTEEECSCSEEEEEEEEEEEHHHHHHHTCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTT-T
T ss_pred CCEEEECCCCCCCCEEEEECHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHHCCCCC-C
T ss_conf 406870345556620476324167655754076653456776514333334332236763011221666654305543-1
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCE----EECCCC----------------CCCCCCHHHHHH
Q ss_conf 001036652018999999965993699941242232015851----400786----------------546778658354
Q gi|254780342|r 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH----YLPGGE----------------EISGFGEASVYT 228 (309)
Q Consensus 169 ~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~----~Ledp~----------------~~~~~p~~~~~~ 228 (309)
+.+..++++++.+.+..|+++++|+++++|+|||++.+|++. .+.+|. ..|+||++++.+
T Consensus 159 ~~~~~~s~~~~~~~~~~a~~~~~~i~~~~w~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 238 (309)
T 1r9l_A 159 VTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHI 238 (309)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCCEEEEEESSSHHHHSCBTTTEEECBCSSCCCTTCTTCCCBCTTSCBCSSCSEEEEE
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 24404675789999998643367669996144123124201213434466865557645444568876455673666322
Q ss_pred HHCHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 427777874889999987408998999999999984599---9899999999985999998754
Q gi|254780342|r 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ---DRQFVGRTMLRTHPDLLKNWLI 289 (309)
Q Consensus 229 vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~~v~~~g~---~~~~vA~~wL~~n~~~~~~Wl~ 289 (309)
++|++|+++||+++++|++++||+++|++||+.|+.++. +|++||++||++|+++|++||+
T Consensus 239 vv~~~~~~~~P~~~~~L~~~~lt~e~~~~ln~~v~~~~~~~~d~~~vA~~wL~~n~~~~~~W~~ 302 (309)
T 1r9l_A 239 VANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVN 302 (309)
T ss_dssp EEEHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHH
T ss_conf 6525687779899999985689999999999999845788778999999999979699999852
No 4
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp}
Probab=100.00 E-value=8.4e-45 Score=309.70 Aligned_cols=250 Identities=11% Similarity=0.090 Sum_probs=202.7
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE----ECCHHHHHHHHHCCCCEEEEEEECCCCHHHH----
Q ss_conf 58345883799425886999999999999961069848998----5640578888514981399984046413566----
Q gi|254780342|r 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK----LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI---- 91 (309)
Q Consensus 20 ~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~----~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~---- 91 (309)
++..++++|+||+++|+|+.++++|++++||+.+||+|+++ .+++.++|+||++|+||+++|.|.++....+
T Consensus 3 ~~~~~~~~I~Ig~~~w~e~~~~a~i~~~iLe~~g~~~v~~~~~~~~g~~~~~~~al~~GdiDv~~e~w~g~~~~~~~~~~ 82 (282)
T 3o66_A 3 ASKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEA 82 (282)
T ss_dssp ----CCCCCEEEEESSHHHHHHHHHHHHHHHHHTTTSCCCEEEEEESSHHHHHHHHHHTSCSEEEEEEHHHHHHTTTCCC
T ss_pred CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEHHCCCHHHHHHHCCC
T ss_conf 67688998899717760999999999999985459834888657776289999999869971840420445777663356
Q ss_pred -------------HHHHHCCCEEEECCCCCCCEEEEEEEHHHHH-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCH--HH
Q ss_conf -------------6655304702301356685356786344641-2345535655556654420135785432005--55
Q gi|254780342|r 92 -------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ--RI 155 (309)
Q Consensus 92 -------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~--~~ 155 (309)
.....+..+....+.+.+....++|+++.+. .+++++++|.+... ...+|+++++..+. ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~i~~i~dl~~~~~---~~~~g~~~~~~~~~~~~~ 159 (282)
T 3o66_A 83 PIKDPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSK---DLRLGMDSSWMNRKGDGY 159 (282)
T ss_dssp CCCSHHHHHHHHHHHHHHHHSEEECCCCSCBCCEEEEECHHHHHHHTCSBSGGGTTTGG---GCEEEEEGGGCC--CCSH
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCCC---CCEECCCCCCCCCCCCHH
T ss_conf 65787999999986565327836505643234555435687863348022010013331---111234754445442035
Q ss_pred HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHH
Q ss_conf 87664035452210010366520189999999659936999412422320158514007865467786583544277778
Q gi|254780342|r 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235 (309)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~ 235 (309)
....+.|++.. . ++..++.+.+++|+++++|+|+++|+|||++.+|+|++|+||++.+ |++++.+++|++|+
T Consensus 160 ~~l~~~y~~~~--~----~~~~~~~a~~~~A~~~~~~~v~~~w~p~~~~~~~~l~~LeDp~~~~--~~~~v~~~~~~~~~ 231 (282)
T 3o66_A 160 EGFKKEYGFDF--G----TVRPMQIGLVYDALNTEKLDVALGYSTDGRIAAYDLKVLKDDKQFF--PPYAASAVATNELL 231 (282)
T ss_dssp HHHHHHHCCCC--S----EEEEECGGGHHHHHHTTSCSEEEEETTCHHHHHTTCEECBCTTCCS--CCCBEEEEEEHHHH
T ss_pred HHHHHCCCCCC--C----CCCCCCHHHHHHHHHCCCCEEEEECCCCHHHCCCCCEECCCCCCCC--CCCCCHHHHHHHHH
T ss_conf 66654045566--5----5422237889999864897699804885341146701337871237--63111024404677
Q ss_pred HHCHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 7488999998740--89989999999999845999899999999985
Q gi|254780342|r 236 DKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280 (309)
Q Consensus 236 ~~~P~~~~~L~~~--~ls~~~~~~l~~~v~~~g~~~~~vA~~wL~~n 280 (309)
++||+++++|+++ +||+++|++||++|+.+|++|++||++||++|
T Consensus 232 ~~~P~v~~~l~~~~~~lt~~~l~~l~~~v~~~g~~~~~~A~~wL~~n 278 (282)
T 3o66_A 232 RQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 278 (282)
T ss_dssp HHCTHHHHHHHTTTTCCCHHHHHHHHHHHHTSCCCHHHHHHHHHHHT
T ss_pred HHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 77979999999986518999999999999875999999999999974
No 5
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, non-classical hydrogen bonds; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A
Probab=100.00 E-value=3.8e-43 Score=299.13 Aligned_cols=247 Identities=16% Similarity=0.207 Sum_probs=200.4
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH-----
Q ss_conf 3458837994258869999999999999610698489985--640578888514981399984046413566665-----
Q gi|254780342|r 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY----- 94 (309)
Q Consensus 22 ~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~--~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~----- 94 (309)
+.++++|+||+++|+|+.++++|++++||+. ||+|+++. +++.++|++|++|+||+++|+|+|.....+.+.
T Consensus 2 s~~~~~v~Ig~~~w~~~~~~a~i~~~~Le~~-Gy~Ve~~~~~~~~~~~~~al~~GdiDv~~e~w~~~~~~~~~~~~~~~~ 80 (275)
T 1sw5_A 2 SQSSERVVIGSKPFNEQYILANMIAILLEEN-GYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELW 80 (275)
T ss_dssp ----CCEEECCCSSHHHHHHHHHHHHHHHHT-TCCEEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSC
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCC
T ss_conf 9889987996788859999999999999986-996599864786088999997699778973021046787764465435
Q ss_pred -------------HHCCCEEEECCCCCCCEEEEEEEHHHHH-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH-HHHHH
Q ss_conf -------------5304702301356685356786344641-23455356555566544201357854320055-58766
Q gi|254780342|r 95 -------------LEEGSIKLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR-ILDMI 159 (309)
Q Consensus 95 -------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~-~~~~~ 159 (309)
.....+..+.+...+...++.++++.+. .++.++.|+.+... ...+|+++++..+.. .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~~~~~dl~~~~~---~~~~g~~~~~~~~~~~~~~~~ 157 (275)
T 1sw5_A 81 DQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAVRADWAEENGVEKISDLAEFAD---QLVFGSDPEFASRPDGLPQIK 157 (275)
T ss_dssp CHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEEEHHHHHHHTCCBGGGGTTTGG---GCEEEECHHHHHSTTSHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEECHHHHHCCCHHHHHHHHHHCC---CCCEECCCCCCCHHHHHHHHH
T ss_conf 66778999876431267758825654468523667678742148566765101023---541202776421465789888
Q ss_pred HHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCH
Q ss_conf 40354522100103665201899999996599369994124223201585140078654677865835442777787488
Q gi|254780342|r 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239 (309)
Q Consensus 160 ~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P 239 (309)
+.|++. +. +++.++.+.+.+|+++++|+++++|+|||++.+|+|++|+||++.+ ++++..+++|+.++ ++|
T Consensus 158 ~~~g~~--~~----~~~~~~~a~~~~A~~~~~~~v~~~w~P~~~~~~~dl~~Ledp~~~~--~~~~~~~~v~~~~~-~~p 228 (275)
T 1sw5_A 158 KVYGFE--FK----EVKQMEPTLMYEAIKNKQVDVIPAYTTDSRVDLFNLKILEDDKGAL--PPYDAIIIVNGNTA-KDE 228 (275)
T ss_dssp HHHTCC--CS----EEEECCGGGHHHHHHTTSCSEEEEETTCHHHHHTTEEECBCTTCCS--CCCEEEEEECTTGG-GCH
T ss_pred HHCCCC--CC----CCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCCCCCC--CCCCCEEEECCCHH-HCH
T ss_conf 844986--56----6434444788999865897499825887543457727816886557--66430367604111-296
Q ss_pred HHHHHHHHC--CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 999998740--899899999999998459998999999999859
Q gi|254780342|r 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281 (309)
Q Consensus 240 ~~~~~L~~~--~ls~~~~~~l~~~v~~~g~~~~~vA~~wL~~n~ 281 (309)
+++++|+++ +||+++|++|+++|+.+|++|+++|++||++|.
T Consensus 229 ~~~~~L~~~~~~ls~e~l~~l~~~i~~~g~~~~~~A~~Wl~~ng 272 (275)
T 1sw5_A 229 KLISVLKLLEDRIDTDTMRALNYQYDVEKKDAREIAMSFLKEQG 272 (275)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 89999998761289999999999999769999999999999769
No 6
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=100.00 E-value=2.2e-38 Score=268.15 Aligned_cols=165 Identities=21% Similarity=0.396 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCC
Q ss_conf 65555665442013578543200555876640354522100103665201899999996599369994124223201585
Q gi|254780342|r 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI 209 (309)
Q Consensus 130 dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl 209 (309)
++++.++.|+++|+||+|||+++......++.|+|+ +++++++|+++|++++.+|+++++|+|+|+|+|||++.+|++
T Consensus 2 ~~~~~~~~~~~~I~Gi~pG~g~~~~~~~~i~~ygL~--~~~l~~gS~aam~a~l~~A~~~~epiv~~~W~Phw~~~~~dl 79 (268)
T 2b4l_A 2 ENASAAEQVNKTIIGIDPGSGIMSLTDKAMKDYDLN--DWTLISASSAAMTATLKKSYDRKKPIIITGWTPHWMFSRYKL 79 (268)
T ss_dssp TTCCHHHHTTTEEECCCTTSHHHHHHHHHHHHTTCT--TCEEECCCHHHHHHHHHHHHHTTCCCCEEEEESCTHHHHSCE
T ss_pred CHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCC--CEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCE
T ss_conf 345679974997998579846899999999966999--728714889999999999997699989981223155330745
Q ss_pred EEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 14007865467786583544277778748899999874089989999999999845999899999999985999998754
Q gi|254780342|r 210 HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289 (309)
Q Consensus 210 ~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~~v~~~g~~~~~vA~~wL~~n~~~~~~Wl~ 289 (309)
++|+||++.++ ++..+.+++|++|+++||+++++|++|+||++++++|++.|+ +|++|+++|++||++|+++|++||+
T Consensus 80 ~~LedP~~~~g-~~~~v~~~~~~~f~~~~P~a~~~l~~~~~t~~~~~~l~~~i~-~g~~~~~aA~~Wl~~n~~~v~~Wl~ 157 (268)
T 2b4l_A 80 KYLDDPKQSYG-SAEEIHTITRKGFSKEQPNAAKLLSQFKWTQDEMGEIMIKVE-EGEKPAKVAAEYVNKHKDQIAEWTK 157 (268)
T ss_dssp EECBCTTCTTC-SSEEEEEEEETTHHHHSHHHHHHHHTCCCCHHHHHHHHHHHH-TTCCHHHHHHHHHHHCHHHHHHHTT
T ss_pred EECCCCCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHCHHHHHHHHH
T ss_conf 76146577778-721301163011466695999999974889999999999998-5999999999999979299998851
Q ss_pred CCCCCCCHH
Q ss_conf 754567713
Q gi|254780342|r 290 GVTTFDGQD 298 (309)
Q Consensus 290 ~~~~~~~~~ 298 (309)
|++|.+++.
T Consensus 158 g~~~~~~~~ 166 (268)
T 2b4l_A 158 GVQKVKGDK 166 (268)
T ss_dssp TCCCCSSCE
T ss_pred CCCCCCCCC
T ss_conf 654677775
No 7
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=99.83 E-value=3.6e-20 Score=149.57 Aligned_cols=110 Identities=20% Similarity=0.345 Sum_probs=100.9
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCC
Q ss_conf 58345883799425886999999999999961069848998564057888851498139998404641356666553047
Q gi|254780342|r 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS 99 (309)
Q Consensus 20 ~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~ 99 (309)
....+++||+||..+|+++.++++|++++||+ +||+||++++++.++|++|++|+||+++|+|.|+++..+.+.. ++.
T Consensus 159 ~~~~~~~~i~i~~~~W~~~~a~t~v~~~iLe~-~Gy~Ve~~~~~~~~~~~~l~~GdiD~~~e~W~p~~~~~~~~~~-~g~ 236 (268)
T 2b4l_A 159 VQKVKGDKINLAYVAWDSEIASTNVIGKVLED-LGYEVTLTQVEAGPMWTAIATGSADASLSAWLPNTHKAYAAKY-KGK 236 (268)
T ss_dssp CCCCSSCEEEEEECCCHHHHHHHHHHHHHHHH-HTCEEEEEECCTTHHHHHHHHTSSSEEEEEEETTTTHHHHHHT-TTS
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH-CCC
T ss_conf 54677775156424876189999999999998-6995378877848899999779961863015686408888860-995
Q ss_pred EEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHH
Q ss_conf 0230135668535678634464123455356555
Q gi|254780342|r 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133 (309)
Q Consensus 100 ~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~ 133 (309)
++.++.++.+...+|+||+|++ +|+|++||++
T Consensus 237 ~~~lg~~~~~~~~G~~VP~Y~~--di~si~DL~k 268 (268)
T 2b4l_A 237 YDDIGTSMTGVKMGLVVPQYMK--NVNSIEDLKK 268 (268)
T ss_dssp EEEEEEEEEEEEEEEEEETTCT--TCCBGGGGTC
T ss_pred EEECCCCCCCCEEEEEECCCCC--CCCCHHHHCC
T ss_conf 6981525668579999364446--8889788377
No 8
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=99.41 E-value=7.8e-11 Score=88.86 Aligned_cols=207 Identities=14% Similarity=0.132 Sum_probs=134.9
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 583458837994258869999999999999610-6984899856-40578888514981399984046413566665530
Q gi|254780342|r 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEI-LGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE 97 (309)
Q Consensus 20 ~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~-lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~ 97 (309)
+.+++..+||||........+++.-- ..+|+. .|++|+.... +...+.++|.+|++|+..-...+.... ....
T Consensus 23 a~a~~~~~lrIg~~~~~~~~~va~~~-G~f~~~~~~~~v~~~~~~~g~~~~~al~sG~~D~~~~~~~~~~~~----~~~G 97 (324)
T 3ksx_A 23 ALAAEPAQLRIGYQKAVSSLVLAKQH-RLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPPLFA----QAAG 97 (324)
T ss_dssp --CCCCSEEEEEEETTCHHHHHHHHH-THHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEEEESHHHHHH----HHTT
T ss_pred CCCCCCCEEEEEEECCCCHHHHHHHH-CHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHH----HHCC
T ss_conf 55589975999961686579999984-869783899827999789779999999849928896465999999----9879
Q ss_pred CCEEEECCCCCC-CEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 470230135668-5356786344641234553565555665442013578543200555876640354522100103665
Q gi|254780342|r 98 GSIKLVAENLQG-AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176 (309)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~ 176 (309)
..+..++..... ....+.++. ..+|++++|| +++.+|.+.+..........++..|+.....+++..+.
T Consensus 98 ~~~~~v~~~~~~~~~~~iv~~~---~s~i~s~~DL-------kGK~v~v~~gs~~~~~l~~~L~~~Gl~~~dV~~v~~~~ 167 (324)
T 3ksx_A 98 ADLLYVGWVPPTPKAETILVPS---KSALRTVADL-------KGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSP 167 (324)
T ss_dssp CCEEEEEEECCCGGGEEEEEET---TCSCCSGGGG-------TTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCH
T ss_pred CCEEEEEEEECCCCCEEEEEEC---CCCCCCHHHH-------CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEECCH
T ss_conf 9859999896379842899808---9999997893-------89989875687306799999998799732354012582
Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCHHHHCCC--CEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHH-HHHHC
Q ss_conf 20189999999659936999412422320158--51400786546778658354427777874889999-98740
Q gi|254780342|r 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLN--IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR-LLKNI 248 (309)
Q Consensus 177 ~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~d--l~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~-~L~~~ 248 (309)
.+...|+.+|+.+++..|.|........ .+++-++.+.. ++ ....+++++|.++||++.+ |++.+
T Consensus 168 ----~~~~~al~~G~vDa~~~~~p~~~~~~~~g~~~~l~~~~~~~--~~-~~~~~~~~~~~~~~p~~v~~fl~a~ 235 (324)
T 3ksx_A 168 ----ANARAAFAAGQVDAWAIWDPWYSALTLDGSARLLANGEGLG--LT-GGFFLSSRRYATAWGPFVQQVMGTL 235 (324)
T ss_dssp ----HHHHHHHHTTCCSEEEEETTHHHHHHHTTSEEEEEESTTSC--CC-CEEEEEEHHHHHHTHHHHHHHHHHH
T ss_pred ----HHHHHHHHCCCCCEEEECCHHHHHHHHCCCCEEEECCCCCC--CC-CCEEEECHHHHHHCHHHHHHHHHHH
T ss_conf ----66666653135009998157999999749948997144468--76-6438985888867989999999999
No 9
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=99.37 E-value=7.8e-12 Score=95.38 Aligned_cols=202 Identities=12% Similarity=0.147 Sum_probs=133.5
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 883799425886999999999999961-06984899856-4057888851498139998404641356666553047023
Q gi|254780342|r 25 CTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 25 ~~~I~ig~~~wte~~v~a~i~~~iLE~-~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
-+|||||+.+.+...+++.-- ..+|+ .++++|+.... +...+.++|.+|++|+..-...+.. ........+..
T Consensus 2 p~~irIGy~~~~~~~~va~~~-g~fe~~g~~~~Ve~~~~~~g~~~~~al~~G~iD~~~~~~~~~l----~~~~~G~~~~~ 76 (308)
T 2x26_A 2 PEALRIGYQKGSIGMVLAKSH-QLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPI----FAQAAGADLVY 76 (308)
T ss_dssp CSEEEEEECTTCHHHHHHHHT-THHHHHCTTSEEEEEECSSHHHHHHHHHHTSCSEEEECSHHHH----HHHHTTCCEEE
T ss_pred CCEEEEEECCCCHHHHHHHHH-CHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEECHHHHH----HHHHCCCCEEE
T ss_conf 964999757885499999970-9787718998079997898799999998499788995739999----99987989799
Q ss_pred ECCCCCC-CEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHH
Q ss_conf 0135668-535678634464123455356555566544201357854320055587664035452210010366520189
Q gi|254780342|r 103 VAENLQG-AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181 (309)
Q Consensus 103 ~~~~~~~-~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a 181 (309)
++..... ....+++++ ..++++++|| +++.+|..++..........++..|+.....+++.....
T Consensus 77 v~~~~~~~~~~~~~~~~---~s~i~s~~DL-------kGK~Iav~~g~~~~~~~~~~L~~~Gl~~~dv~~v~~~~~---- 142 (308)
T 2x26_A 77 VGVEPPKPKAEVILVAE---NSPIKTVADL-------KGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPA---- 142 (308)
T ss_dssp EEEECCCGGGEEEEEET---TCSCCSGGGG-------TTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHH----
T ss_pred EEEECCCCCEEEEEECC---CCCCCCHHHH-------CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCH----
T ss_conf 99970577448999878---9887998894-------697223358865899999999983998424476305825----
Q ss_pred HHHHHHHCCCCEEEEEECCCHHHH--CCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHH-HHHHHHC
Q ss_conf 999999659936999412422320--158514007865467786583544277778748899-9998740
Q gi|254780342|r 182 QIRRDQRNNIPAVFLSWEPHPINS--DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI-SRLLKNI 248 (309)
Q Consensus 182 ~l~~A~~~~~~~v~~~wsp~~~~~--~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~-~~~L~~~ 248 (309)
+..+|+.+|+++.+..|.|..... +...+.|.++.+.. ++....+++++|.++||++ .+|++.+
T Consensus 143 ~~~~al~~g~vda~~~~ep~~~~~~~~g~~~~l~~~~~~~---~~~~~~~~~~~~~~~~p~~v~~fl~a~ 209 (308)
T 2x26_A 143 DARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLN---QTGSFYLAARPYAEKNGAFIQGVLATF 209 (308)
T ss_dssp HHHHHHHTTSSSEEEEETTHHHHHHHHSSEEEEEESTTSC---CCCEEEEEEHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEECCHHHHHHHHCCCCEEEEECCCCC---CCCEEEEECHHHHHHCHHHHHHHHHHH
T ss_conf 6777764225548996361699999759948997356568---774489961688887969999999999
No 10
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=99.15 E-value=1.4e-10 Score=87.13 Aligned_cols=224 Identities=8% Similarity=0.055 Sum_probs=119.1
Q ss_pred HHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHH
Q ss_conf 9863035834588379942588699999999999996106984899856-405788885149813999840464135666
Q gi|254780342|r 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92 (309)
Q Consensus 14 ~~~~~~~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~ 92 (309)
+....++...+.++|+||...|+.+.. ..++..+|+. ||+||++.. +.....+||.+|+||+..-.+.|....+.+
T Consensus 27 ~~~~~~~~~~~~k~i~IG~~~~~~~~~--~~~~~~~kk~-Gl~Ve~~~F~d~~~~~~AL~~G~ID~~~~~~~p~l~~~~k 103 (295)
T 1p99_A 27 IQRPTSTGSNNDKKVTIGVASNDTKAW--EKVKELAKKD-DIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKK 103 (295)
T ss_dssp -------------CEEEEESSSCCHHH--HHHHHHHGGG-TCCEEEEECSSTTSHHHHHHTTSSSEEEEEEHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEECCCCHHHH--HHHHHHHHHC-CCEEEEEEECCCHHHHHHHHCCCCCEEECCCHHHHHHHHH
T ss_conf 578888888999649999679838999--9999999975-9889999817827799999759967675178999999997
Q ss_pred HHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC-CCC----
Q ss_conf 655304702301356685356786344641234553565555665442013578543200555876640354-522----
Q gi|254780342|r 93 PYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF-SLK---- 167 (309)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l-~~~---- 167 (309)
. .....+..++..+... .+.+. ....++.++. +++.++.+.+..........+...++ .+.
T Consensus 104 ~-~~g~~l~~v~~~~~~~-~~~~~------~~~~~i~d~~------~Gk~Ia~p~~~s~~~~~l~~l~~~gli~l~~~~~ 169 (295)
T 1p99_A 104 A-HKGTKISALSTTVLAP-LGIYS------DKIKDVKKVK------DGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFG 169 (295)
T ss_dssp H-CTTCCEEEEEEEEECC-CEEEC------SSCSCGGGCC------TTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCC
T ss_pred H-CCCCEEEEECCCCCCC-CCCCC------CCCCCHHHCC------CCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCC
T ss_conf 6-7995599944521123-10126------5666321125------8985783368728999999998669277458888
Q ss_pred -------------CEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCC----EEECCCCCCCCCCHHHHHHHH
Q ss_conf -------------100103665201899999996599369994124223201585----140078654677865835442
Q gi|254780342|r 168 -------------GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI----HYLPGGEEISGFGEASVYTVV 230 (309)
Q Consensus 168 -------------~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl----~~Ledp~~~~~~p~~~~~~vv 230 (309)
...+.+...+ +.+...+++++...|.|.......+. .+++++.. ....++-...++
T Consensus 170 ~~~t~~DI~~n~~~~~~~~~~~a------~~a~a~~~vDaa~i~~p~~~~a~~~~~~~~l~~e~~~~-~~~~~~~~~~~~ 242 (295)
T 1p99_A 170 LAGTVKDITSNPKHLKITAVDAQ------QTARALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNS-DAVKPYINIVAV 242 (295)
T ss_dssp TTCCGGGEEECTTCCEEEEECGG------GTTGGGGTSSEEEECHHHHHHTTCCTTTSCSEECCCSS-GGGGGGEEEEEE
T ss_pred CCCCHHHHHHCCCCCCCCCCCHH------HHHHHCCCCCEEEECCHHHHHHCCCCCCCEEEECCCCC-CCCCCEEEEEEE
T ss_conf 77787666544444454564066------77873277648995543999827886666588647766-667753799997
Q ss_pred CHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 7777874889999987408998999999999984599989999999998599
Q gi|254780342|r 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282 (309)
Q Consensus 231 ~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~~v~~~g~~~~~vA~~wL~~n~~ 282 (309)
|. ..++.|.+.+|++.++ .+-+++|+++|..
T Consensus 243 r~-~~~~~e~vk~lv~a~~--------------------s~E~~~~I~~~~~ 273 (295)
T 1p99_A 243 ND-KDLDNKTYAKIVELYH--------------------SKEAQKALQEDVK 273 (295)
T ss_dssp EG-GGTTCHHHHHHHHHHH--------------------SHHHHHHHHHHHT
T ss_pred CC-CCCCCHHHHHHHHHHC--------------------CHHHHHHHHHCCC
T ss_conf 84-0019799999999978--------------------9999999997148
No 11
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=99.04 E-value=6.4e-09 Score=76.42 Aligned_cols=209 Identities=14% Similarity=0.092 Sum_probs=131.1
Q ss_pred CCCCCCEEEECCCCCHHH-HHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCC
Q ss_conf 345883799425886999-99999999996106984899856-4057888851498139998404641356666553047
Q gi|254780342|r 22 ADSCTPVRFADTGWTDIA-ATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS 99 (309)
Q Consensus 22 ~~~~~~I~ig~~~wte~~-v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~ 99 (309)
..+..+++|+..+++... +.-..-+..+++. |.+|++... +.....++|.+|++|+-.. .| ............
T Consensus 14 ~~~~~~~~v~~~~~~~~~p~~vA~~~G~f~~~-GldV~~~~~~~~~~~~~al~~G~~D~~~~--~~--~~~~~a~~~g~~ 88 (365)
T 2de3_A 14 LDSAIRDTLTYSNSPVPNALLTASESGFLDAA-GIELDVLSGQQGTVHFTYDQPAYTRFGGE--IP--PLLSEGLRAPGR 88 (365)
T ss_dssp ------CEEEEEECSSCCHHHHHHHTTHHHHT-TCEEEECBGGGTTHHHHCCSTTEEEEECS--HH--HHHHHHTTCTTS
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHCCHHHHC-CCCEEEEECCCCHHHHHHHHCCCCCEEEE--CH--HHHHHHHHCCCC
T ss_conf 67663479996479850899999986979984-99179996788279999997598378930--58--999999748998
Q ss_pred EEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCC--------------------------CCCCCCH
Q ss_conf 02301356685356786344641234553565555665442013578--------------------------5432005
Q gi|254780342|r 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE--------------------------PGNEGNQ 153 (309)
Q Consensus 100 ~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~--------------------------~~~~~~~ 153 (309)
+..++.........++++. ..+|++++||+. +.+|.+ .+.....
T Consensus 89 ~~~i~~~~~~~~~~l~v~~---~s~I~s~~DLkG-------k~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~ 158 (365)
T 2de3_A 89 TRLLGITPLLGRQGFFVRD---DSPITAAADLAG-------RRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEAR 158 (365)
T ss_dssp EEEEEEEEECCSEEEEEET---TCSCCSGGGGTT-------CEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHH
T ss_pred EEEEEEEECCCCEEEEEEC---CCCCCCHHHHCC-------CEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 6999997438850899978---877788699789-------835025664201356665431023332124577867999
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHH----------------------HHHHHHHHCCCCEEEEEECCCHHHHCC-CCE
Q ss_conf 558766403545221001036652018----------------------999999965993699941242232015-851
Q gi|254780342|r 154 RILDMINNNKFSLKGFRLIEASELASF----------------------SQIRRDQRNNIPAVFLSWEPHPINSDL-NIH 210 (309)
Q Consensus 154 ~~~~~~~~~~l~~~~~~~~~~s~~~~~----------------------a~l~~A~~~~~~~v~~~wsp~~~~~~~-dl~ 210 (309)
.....++..|++....+++..+.+.+. ....+|+.+|+++.+.+|.|.....+. +..
T Consensus 159 ~l~~~l~~~Gl~~~dV~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aAL~~G~VDA~~~~~P~~~~~~~~g~~ 238 (365)
T 2de3_A 159 ALLHTLEHGELGVDDVELVPISSPGVDVPAEQLEESATVKGADLFPDVARGQAAVLASGDVDALYSWLPWAGELQATGAR 238 (365)
T ss_dssp HHHHHHHHTTCCGGGSEEEECCCTTTCCCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSSCSEEEEEHHHHHHHHHTTEE
T ss_pred HHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHCCCC
T ss_conf 99999998499989937620480444444431000013444321234420489999769826999657559999865994
Q ss_pred EE-CCCCCCCCCCHHHHHHHHCHHHHHHCHHHHH-HHHH
Q ss_conf 40-0786546778658354427777874889999-9874
Q gi|254780342|r 211 YL-PGGEEISGFGEASVYTVVRSDYLDKCPNISR-LLKN 247 (309)
Q Consensus 211 ~L-edp~~~~~~p~~~~~~vv~~~~~~~~P~~~~-~L~~ 247 (309)
.+ ..+..... .+....+++++|.++||++.+ |++.
T Consensus 239 ~v~~~~~~~~~--~~~~~l~~~~~~~~~~p~~v~~f~~A 275 (365)
T 2de3_A 239 PVVDLGLDERN--AYASVWTVSSGLVRQRPGLVQRLVDA 275 (365)
T ss_dssp ESSCGGGSGGG--CEEEEEEEEHHHHHHCHHHHHHHHHH
T ss_pred EEEECCCCCCC--CCCCEEEECHHHHHHCHHHHHHHHHH
T ss_conf 69742223555--44423661499987685999999999
No 12
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=98.74 E-value=1.3e-06 Score=61.35 Aligned_cols=200 Identities=11% Similarity=0.105 Sum_probs=118.3
Q ss_pred CCEEEECCCC---CHHH-HHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCE
Q ss_conf 8379942588---6999-99999999996106984899856-40578888514981399984046413566665530470
Q gi|254780342|r 26 TPVRFADTGW---TDIA-ATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSI 100 (309)
Q Consensus 26 ~~I~ig~~~w---te~~-v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~ 100 (309)
++|+|+ .+| ++.. ..-..-+-..|+. |.+|++... +.....++|.+|++|+...... ...........+
T Consensus 3 ~~v~~~-l~w~p~~~~ap~~vA~~~G~f~~~-Gl~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~----~~~~~~~~g~~~ 76 (302)
T 3ix1_A 3 ETVEVM-LDWYPNAVHTFLYVAIENGYFAEE-GLDVDIVFPTNPTDPIQLTASGAIPLALSYQP----DVILARSKDLPV 76 (302)
T ss_dssp EEEEEE-CSSSCCGGGHHHHHHHHTTHHHHT-TEEEEEECCSSTTHHHHHHHHTSCSEEEECHH----HHHHHHHTTCCE
T ss_pred CCEEEE-ECCEECCCCHHHHHHHHCCHHHHC-CCEEEEEECCCCHHHHHHHHCCCCCEEEECHH----HHHHHHHCCCCE
T ss_conf 717998-488766064999999988938984-97189995798059999997799898997758----999987334885
Q ss_pred EEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf 23013566853567863446412345535655556654420135785432005558766403545221001036652018
Q gi|254780342|r 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180 (309)
Q Consensus 101 ~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~ 180 (309)
...+........++.++. ..++++++|| +++.+|...+..........++..|+.....+++.....
T Consensus 77 ~~~~~~~~~~~~~l~~~~---~~~i~~~~DL-------kGK~v~~~~~~~~~~~l~~~l~~~Gl~~~~v~~v~~~~~--- 143 (302)
T 3ix1_A 77 VSVASVVRSPLNHVMFLA---EQDFDSPADL-------VGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDVGFE--- 143 (302)
T ss_dssp EEEEEEECSCCEEEEEEG---GGCCSSGGGG-------TTSEEEECSCTTHHHHHHHHHHHTTCCGGGCEEEECTTC---
T ss_pred EEEEEEECCCCCEEEEEC---CCCCCCHHHH-------CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC---
T ss_conf 899854058973699853---7798887895-------676221789977899999999972899761178458843---
Q ss_pred HHHHHHHHCCCCEEEEE-ECCC-HHH-HC--CCCEEECCCCCCCCCCHHH-HHHHHCHHHHHHCHHHH-HHHHHC
Q ss_conf 99999996599369994-1242-232-01--5851400786546778658-35442777787488999-998740
Q gi|254780342|r 181 SQIRRDQRNNIPAVFLS-WEPH-PIN-SD--LNIHYLPGGEEISGFGEAS-VYTVVRSDYLDKCPNIS-RLLKNI 248 (309)
Q Consensus 181 a~l~~A~~~~~~~v~~~-wsp~-~~~-~~--~dl~~Ledp~~~~~~p~~~-~~~vv~~~~~~~~P~~~-~~L~~~ 248 (309)
...|+.+|+.+.+.. |.+. +.. .. .++..+... + ++.|.+. ...+++++|+++||++. +|++.+
T Consensus 144 --~~~al~~G~iDa~~~~~~~~~~~~~~~~g~~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~p~~v~~f~~A~ 214 (302)
T 3ix1_A 144 --LGASIVSGRADAVVGTYINHEYPVLKHEGHDISYFNPV-D-YGVPEYDELVLISNEAYVEESGEVLAAFWRAA 214 (302)
T ss_dssp --HHHHHHHSSSSEEEEEETTTHHHHHHHTTCCEEEECGG-G-TTCCCCCSEEEEEEHHHHHHCHHHHHHHHHHH
T ss_pred --HHHHHHCCCCCEECCCCCCCHHHHHHHCCCCCCCCCHH-H-CCCCCCCCCCEECCHHHHHHCHHHHHHHHHHH
T ss_conf --89999859977000654660899998628763222588-7-09888766311046999987969999999999
No 13
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=98.66 E-value=2.6e-07 Score=65.96 Aligned_cols=197 Identities=10% Similarity=0.050 Sum_probs=109.9
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 88379942588699999999999996106984899856-40578888514981399984046413566665530470230
Q gi|254780342|r 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV 103 (309)
Q Consensus 25 ~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~ 103 (309)
.+|||||...++...++. +.+..+|+. |++||++.. +.....+||.+|+||+..-...|........ ....++..
T Consensus 2 ~~ti~iG~~~~~~~~~l~-~~k~~~k~~-Gl~Ve~~~f~~g~~~~~Al~sG~iD~~~~g~~p~l~~~~~~--~~~~l~~v 77 (241)
T 1xs5_A 2 DETVGVGVLSEPHARLLE-IAKEEVKKQ-HIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQE--HNGDLVSV 77 (241)
T ss_dssp CEEEEEEECSTTHHHHHH-HHHHHHHTT-TEEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHH--HTCCEEEE
T ss_pred CCEEEEEECCCCHHHHHH-HHHHHHHHC-CCEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHHHH--CCCCEEEE
T ss_conf 932999960698599999-999999974-98899999388177899997699767985578899998854--69738999
Q ss_pred CCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC-CCCCCC--------------
Q ss_conf 13566853567863446412345535655556654420135785432005558766403-545221--------------
Q gi|254780342|r 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN-KFSLKG-------------- 168 (309)
Q Consensus 104 ~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~l~~~~-------------- 168 (309)
+..+... .+++.. .+.++.++.+ ++.++.+.+...+......+... .+++..
T Consensus 78 ~~~~~~~-~~l~~~------~~~s~~d~~~------gk~ia~~~~~s~~~~~~~~l~~~~~~~l~~~~~~~~~~~Di~~~ 144 (241)
T 1xs5_A 78 GNVHVEP-LALYSR------TYRHVSDFPA------GAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQN 144 (241)
T ss_dssp EEEEECC-CEEECS------SCCSGGGCCT------TCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEEC
T ss_pred EEECCCC-EEEEEC------CCCCHHHHCC------CCEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHC
T ss_conf 8841465-488836------8677667348------87698258882799999999975881343688876776566534
Q ss_pred ---EEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCC--EEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHH
Q ss_conf ---00103665201899999996599369994124223201585--1400786546778658354427777874889999
Q gi|254780342|r 169 ---FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI--HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243 (309)
Q Consensus 169 ---~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl--~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~ 243 (309)
..+.... ....+...++++.+..|.|......... ..|-+.... +++....++|+. .++.+.+.+
T Consensus 145 ~~~~~~~~~~------~a~~a~~~~~vda~~~~~p~~~~a~~~~~~~~l~~~~~~---~~~~~~lv~r~~-~~~~~~i~~ 214 (241)
T 1xs5_A 145 VRNVVLQEVE------SALLPRVFDQVDGAVINGNYAIMAGLSARRDGLAVEPDA---SAYANVLVVKRG-NEADARVQA 214 (241)
T ss_dssp TTCCEEEEEC------GGGHHHHGGGSSEEEECHHHHHHTTCCTTTTCSEECSCG---GGGCEEEEEETT-CTTCHHHHH
T ss_pred CCCCCCCCCC------HHHHHHHCCCCCEEEECCCHHHHHCCCCCCCEEEECCCC---CCEEEEEEECCH-HHCCHHHHH
T ss_conf 3445425744------767777427775799646489985588766779963789---863799998340-109899999
Q ss_pred HHHHC
Q ss_conf 98740
Q gi|254780342|r 244 LLKNI 248 (309)
Q Consensus 244 ~L~~~ 248 (309)
+++.+
T Consensus 215 l~~a~ 219 (241)
T 1xs5_A 215 VLRAL 219 (241)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99997
No 14
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=98.66 E-value=2.7e-07 Score=65.81 Aligned_cols=204 Identities=12% Similarity=0.063 Sum_probs=112.4
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE-CCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEE
Q ss_conf 458837994258869999999999999610698489985-6405788885149813999840464135666655304702
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIK 101 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~-~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~ 101 (309)
.+.++||||...|+...+.-..-+.++|+. |++||++. .+.....+||.+|+||+..-...|........ .+..+.
T Consensus 3 ~~~~~irvG~~~~~~~~~~~~~~k~~~e~~-Gl~Ve~~~f~~g~~~~~Al~~G~iD~~~~g~~~~~~~~~~~--~~~~~~ 79 (237)
T 3k2d_A 3 MDTSKVKVGVMAGAEAQVAEVAAKVAKEKY-GLDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDRQVED--RDYKLT 79 (237)
T ss_dssp SCCCCEEEEEETTHHHHHHHHHHHHHHHHH-CCCEEEEEESCTTSHHHHHHHTSCSEEEEEEHHHHHHHHHH--HCCCEE
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHHCC--CCCEEE
T ss_conf 888738999607985999999977789866-98899998088256899997699777875457899864105--895079
Q ss_pred EECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-CCCCCCCEEEECCCCCC--
Q ss_conf 301356685356786344641234553565555665442013578543200555876640-35452210010366520--
Q gi|254780342|r 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN-NKFSLKGFRLIEASELA-- 178 (309)
Q Consensus 102 ~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~s~~~-- 178 (309)
..+.. ... ...+.. ....++.++ .+++.++.+.+..........+.. .++.+........+...
T Consensus 80 ~~~~~-~~~--~~~~~~----~~~~~~~~~------~kGk~ia~~~~~s~~~~~l~~l~~~~~~~~~~~~~~~~~~~d~~ 146 (237)
T 3k2d_A 80 IAGNT-FVY--PIAGYS----KQVKSVAAL------ADGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIV 146 (237)
T ss_dssp EEEEC-CCC--CCEEEC----SSCSCSTTC------CTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCSSCCGGGEE
T ss_pred EEECC-CCC--EEEEEC----CCCCCHHHH------CCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 98425-544--069983----787655464------17987999558844999999999849974465544466502055
Q ss_pred ---------HHHHHHHHHHCCCCEEEEEECCCHHHHCCC----CEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHH
Q ss_conf ---------189999999659936999412422320158----5140078654677865835442777787488999998
Q gi|254780342|r 179 ---------SFSQIRRDQRNNIPAVFLSWEPHPINSDLN----IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245 (309)
Q Consensus 179 ---------~~a~l~~A~~~~~~~v~~~wsp~~~~~~~d----l~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L 245 (309)
.......+...++++....|.|.......+ ..+.++.. .++.+..++|++ .++.|.+.+|+
T Consensus 147 ~~~~~~~~~~~~~~~~a~~~~~~da~~~~~p~~~~a~~~~~~~~i~~~~~~-----~~~~~~~v~r~~-~~n~e~v~k~v 220 (237)
T 3k2d_A 147 ENPKNITIMELDAAQLPRSLDDVALSIINTTYASSINLTPEKDGVFVEDKE-----SPYVNLIVARQD-NVQNENVQNFV 220 (237)
T ss_dssp ECTTCCEEEEECGGGHHHHTTTSSEEEECHHHHGGGTCCHHHHCSEECCSS-----SSCCEEEEEETT-TTTSHHHHHHH
T ss_pred HCCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCEEEECCCC-----CCEEEEEEECCC-CCCCHHHHHHH
T ss_conf 453322433331667799752476369664288872058765557645889-----873699998650-01989999999
Q ss_pred HHC
Q ss_conf 740
Q gi|254780342|r 246 KNI 248 (309)
Q Consensus 246 ~~~ 248 (309)
+.+
T Consensus 221 ~A~ 223 (237)
T 3k2d_A 221 KAY 223 (237)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 997
No 15
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=98.60 E-value=1.4e-06 Score=61.11 Aligned_cols=215 Identities=13% Similarity=0.104 Sum_probs=115.3
Q ss_pred HHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH
Q ss_conf 3035834588379942588699999999999996106984899856-405788885149813999840464135666655
Q gi|254780342|r 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL 95 (309)
Q Consensus 17 ~~~~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~ 95 (309)
..++.+...++|+||....+...+..+.++.++|+. ||+||++.. +.....+||.+|+||+-.-.-.|....+...
T Consensus 14 ~~~~~~~~~~~i~ig~~~~~~~~~~~~~v~~~~k~~-Gi~Ve~v~f~d~~~~n~AL~~G~iD~n~~q~~p~l~~~~~~-- 90 (275)
T 3gxa_A 14 AAADNGAAKKEIVFGTTVGDFGDMVKEQIQPELEKK-GYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKE-- 90 (275)
T ss_dssp ---------CEEEEEEETTHHHHHHHHTHHHHHHTT-TCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHH--
T ss_pred CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHCCCCCEECCCCHHHHHHHHHH--
T ss_conf 445677888528999606987999999989999965-98799999578335789986699554314457889999997--
Q ss_pred HCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC-----------
Q ss_conf 304702301356685356786344641234553565555665442013578543200555876640354-----------
Q gi|254780342|r 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF----------- 164 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l----------- 164 (309)
....++.++..+... .+++.. .++++.++++ +..++.+............++..|+
T Consensus 91 ~g~~l~~v~~~~~~~-~glys~------k~ksl~dl~~------G~kIaip~d~sn~~raL~~L~~~Gli~l~~~~~~~~ 157 (275)
T 3gxa_A 91 HNLDITEVFQVPTAP-LGLYPG------KLKSLEEVKD------GSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLT 157 (275)
T ss_dssp HTCCEEEEEECCBCC-CEEEES------SCCCGGGCCT------TCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGG
T ss_pred CCCCEEEEEEEECCC-EEEEEC------CCCCHHHCCC------CCEEEEECCCCHHHHHHHHHHHCCCEECCCCCCCCC
T ss_conf 799679985631155-066632------6565413589------998998248636889999998669531168877554
Q ss_pred --------CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCE--EECCCCCCCCCCHHHHHHHHCHHH
Q ss_conf --------5221001036652018999999965993699941242232015851--400786546778658354427777
Q gi|254780342|r 165 --------SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH--YLPGGEEISGFGEASVYTVVRSDY 234 (309)
Q Consensus 165 --------~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~--~Ledp~~~~~~p~~~~~~vv~~~~ 234 (309)
....+++.+...+ .+.+++ ++.++...|.+...-...+.. .+.++.. +|....++|++
T Consensus 158 ~t~~di~~n~~~l~~~~~~~~----~l~~~l--~dvD~avi~~~~~~~agl~~~~~l~~e~~~-----~y~nvivvr~~- 225 (275)
T 3gxa_A 158 ASKADIAENLKNIKIVELEAA----QLPRSR--ADVDFAVVNGNYAISSGMKLTEALFQEPSF-----AYVNWSAVKTA- 225 (275)
T ss_dssp CCGGGEEECTTCCEEEEECGG----GHHHHT--TTSSEEEECHHHHHHTTCCGGGCSEECCCC-----TTCCEEEEEGG-
T ss_pred CCCCHHHHCCCCCEEEECCHH----HHHHHC--CCCCEEEECCCHHHHCCCCHHHCCCCCCCC-----CEEEEEEEECC-
T ss_conf 540004327656459985666----631312--675589964646877599823400027787-----63699998076-
Q ss_pred HHHCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 874889999987408998999999999
Q gi|254780342|r 235 LDKCPNISRLLKNIKFSVALENEMMKL 261 (309)
Q Consensus 235 ~~~~P~~~~~L~~~~ls~~~~~~l~~~ 261 (309)
-++.|.+.++++.+ ..+++......
T Consensus 226 ~~d~~~ik~l~ea~--~s~ev~~~i~~ 250 (275)
T 3gxa_A 226 DKDSQWLKDVTEAY--NSDAFKAYAHK 250 (275)
T ss_dssp GTTCHHHHHHHHHT--TSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH--CCHHHHHHHHH
T ss_conf 77959999999997--69999999998
No 16
>3hn0_A Nitrate transport protein; YP_001302749.1, structural genomics, joint center for structural genomics, JCSG; 1.75A {Parabacteroides distasonis}
Probab=98.43 E-value=5.4e-06 Score=57.40 Aligned_cols=191 Identities=10% Similarity=0.012 Sum_probs=108.5
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHC---CCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCC
Q ss_conf 58837994258869999999999999610---6984899856-4057888851498139998404641356666553047
Q gi|254780342|r 24 SCTPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS 99 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~v~a~i~~~iLE~~---lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~ 99 (309)
+..+||||....+....+..+ +|+. -++++++... +...+.++|.+|++|+..-.+.+.. .... ....
T Consensus 3 ~~~~irv~~~~~p~~~~~~~~----~~~~~~~~~~~~~v~~~~s~~~~~~~l~~G~~D~~~~~~~~~~--~~~~--~G~~ 74 (283)
T 3hn0_A 3 EDTVIKVSVLRGPSVIAFADW----LENPPIIDNKKVQVKVVDSPDLAQALLIKQETDIAVLPMINAA--NLYN--KGIK 74 (283)
T ss_dssp -CCEEEEEEESSTHHHHTHHH----HHSCCEETTEEEEEEEESCHHHHHHHHHTTCCSEEEEEHHHHH--HHHH--TTCS
T ss_pred CCCEEEEEECCCCHHHHHHHH----HHHCCCCCCCCEEEEEECCHHHHHHHHHCCCCCEEEECHHHHH--HHHH--CCCC
T ss_conf 886599992589618999999----9844745789868999579999999997799989973689999--9996--8997
Q ss_pred EEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 02301356685356786344641234553565555665442013578-54320055587664035452210010366520
Q gi|254780342|r 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELA 178 (309)
Q Consensus 100 ~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~ 178 (309)
+...+.+..+.. .+.+.+| ++++.++.+ ++..........++..|+... ..++..+.
T Consensus 75 i~iia~~~~g~~------------~ivs~~D-------LkGk~i~~~~~gs~~~~~~~~~l~~~Gl~~~-~~~~~~~~-- 132 (283)
T 3hn0_A 75 IKLAGCPIWGTL------------YLVEKTP-------LKEPALYVFGNGTTPDILTRYYLGRQRLDYP-LNYAFNTA-- 132 (283)
T ss_dssp CEEEEEEECCCC------------EEEECSS-------CCSCCEECSSTTSHHHHHHHHHHHHHTCCCC-EECSCCSH--
T ss_pred EEEEEEECCCCC------------EEEEHHH-------CCCCEEEEECCCCHHHHHHHHHHHHCCCCCC-EEEEECCH--
T ss_conf 489998415863------------4863787-------4989999938997899999999997799844-03674382--
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCHHHH---CCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHH-HHHH
Q ss_conf 189999999659936999412422320---15851400786546778658354427777874889999-9874
Q gi|254780342|r 179 SFSQIRRDQRNNIPAVFLSWEPHPINS---DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR-LLKN 247 (309)
Q Consensus 179 ~~a~l~~A~~~~~~~v~~~wsp~~~~~---~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~-~L~~ 247 (309)
.++..++.+|+.+++..|.|..... ..+++++.+....+..... ..++++..+.+.+|++.+ |++.
T Consensus 133 --~~~~~al~~g~vDaa~~~eP~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~a 202 (283)
T 3hn0_A 133 --GEITQGILAGKVNRAVLGEPFLSIALRKDSSLRITADLNHLTDNDTL-GFAQTAVVYTPTMEKYRIAFEDA 202 (283)
T ss_dssp --HHHHHHHHHTSCSEEEECTTHHHHHHHHCTTCEEEEECCCSSTTCSS-CCCCEEEEECGGGGGGHHHHHHH
T ss_pred --HHHHHHHHCCCCCEEEECCHHHHHHHHCCCCEEEEEECHHHCCCCCC-CCHHHHHHHHHHCHHHHHHHHHH
T ss_conf --88899986799778984436899999717982999740463267776-52001798875367889999999
No 17
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=98.36 E-value=1.7e-05 Score=54.14 Aligned_cols=218 Identities=12% Similarity=0.015 Sum_probs=117.6
Q ss_pred CCCCEEEECCCCCHHHHH-HHHHHHHHHHCCCC-EEEEEEC-CHHHHH----HHHHCCCCEEEEEEECCCCHHHHHHH-H
Q ss_conf 588379942588699999-99999999610698-4899856-405788----88514981399984046413566665-5
Q gi|254780342|r 24 SCTPVRFADTGWTDIAAT-TAMTSVILEEILGY-KTNIKLL-AVPVTF----RSLKNKGIDIFMGYWYPSLEKFIAPY-L 95 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~v~-a~i~~~iLE~~lGy-~Ve~~~~-~~~~~~----~al~~G~iD~~~e~w~p~~~~~~~~~-~ 95 (309)
+..+|+||....+....+ -..-+-..|+. |. +|+++.. +...+. .++.+|++|+.+-............. .
T Consensus 31 E~~~lriGyiPl~d~APl~VA~ekGfF~~~-GL~dVel~~~~s~~~~~d~l~~g~a~G~lD~a~~~~~~~~a~~lg~~~~ 109 (417)
T 2g29_A 31 EVTTAKLGFIALTDAAPLIIAKEKGFYAKY-GMPDVEVLKQASWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTD 109 (417)
T ss_dssp SCSCCEEEECSSGGGHHHHHHHHTTHHHHT-TCTTCEEEECSCHHHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTSS
T ss_pred CCCEEEEEEEECCCHHHHHHHHHCCHHHHC-CCCEEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHC
T ss_conf 674389997665053999999977958775-9974689965782779999997642466140002511689999877643
Q ss_pred H-CCCEEEECCCCCCCEEEEEEEHHHHHCCC-CCHHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHHHHCCCCCC-CEEE
Q ss_conf 3-04702301356685356786344641234-5535655556654420135785432-00555876640354522-1001
Q gi|254780342|r 96 E-EGSIKLVAENLQGAKYMLAVNDVGFALGI-KSYQDIAKYKKELGAKIYGIEPGNE-GNQRILDMINNNKFSLK-GFRL 171 (309)
Q Consensus 96 ~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~i-~~~~dl~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~l~~~-~~~~ 171 (309)
. ...+........+ ...+.+........+ .......+....++++.+|...... ........+...|+... ..++
T Consensus 110 ~~~~~~~~~~~~~~~-g~~I~~s~~~~~~~~~~~~~~~i~s~~dLkGk~igv~~~~s~~~~~lr~~L~~~Gldp~~DV~i 188 (417)
T 2g29_A 110 GKPTPMYILARLNVN-GQGIQLGNNYKDLKVGTDAAPLKEAFAKVTDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFST 188 (417)
T ss_dssp SCCCCEEEEEECCBS-CEEEEECGGGGGGCCCSCCTTHHHHHHTSSSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred CCCCCEEEEEECCCC-CCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 789888999873668-7479983232000344565432109888399989997898649999999999669986664389
Q ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHH--CCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHH-HHHHC
Q ss_conf 0366520189999999659936999412422320--15851400786546778658354427777874889999-98740
Q gi|254780342|r 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINS--DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR-LLKNI 248 (309)
Q Consensus 172 ~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~--~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~-~L~~~ 248 (309)
+......+. .|+++|+.+.+..|.|-.... ....+.+....+.....+. ...++|++|.++||+..+ |++.+
T Consensus 189 v~~~p~~~~----~aL~~G~iDa~~~~eP~~~~a~~~g~g~~~~~~~di~~~~p~-~vl~~~~~~~~~nPe~v~afv~Al 263 (417)
T 2g29_A 189 IVVPPAQMV----ANVKVNAMESFCVGEPWPLQTVNQGVGYQALTTGQLWKDHPE-KAFGMRADWVDQNPKAAKALLMAV 263 (417)
T ss_dssp EECCGGGHH----HHHHTTSCSEEEEETTHHHHHHHHTSCEEEEEGGGTBTTCBC-EEEEEEHHHHHHCHHHHHHHHHHH
T ss_pred EECCHHHHH----HHHHCCCCCEEEECCHHHHHHHHCCCCEEEEECHHHCCCCCC-EEEEECHHHHHHCHHHHHHHHHHH
T ss_conf 855779999----999668703899544499999864885898510463289863-699964898853989999999999
No 18
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=98.18 E-value=5.4e-05 Score=50.88 Aligned_cols=194 Identities=9% Similarity=0.057 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC-CHHHHHHHHHHHHHHHC-CCCEEEEEE-CCHHHHHHHHHCCCCE
Q ss_conf 95799999999999863035834588379942588-69999999999999610-698489985-6405788885149813
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGW-TDIAATTAMTSVILEEI-LGYKTNIKL-LAVPVTFRSLKNKGID 77 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~~~~~I~ig~~~w-te~~v~a~i~~~iLE~~-lGy~Ve~~~-~~~~~~~~al~~G~iD 77 (309)
|||.++++++++.+ + . ..+.++|++-.= ...+.++.-+++++.++ -|++++.++ +++......|.+|++|
T Consensus 1 m~~~ila~l~~a~~----a-~--A~~~l~i~tg~~gg~~~~~g~~ia~~~~~~~~gi~~~~~~t~Gs~~N~~~l~~g~~d 73 (314)
T 1us5_A 1 MRKPILAALTLAGL----G-L--AQEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFE 73 (314)
T ss_dssp -----------------------CCEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCS
T ss_pred CCHHHHHHHHHHCH----H-H--HCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf 93899999997243----4-2--331489997999971499999999999735898489998078889999999769971
Q ss_pred EEEEEECCCCHHHHHH--HH----HCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9998404641356666--55----30470230135668535678634464123455356555566544201357854320
Q gi|254780342|r 78 IFMGYWYPSLEKFIAP--YL----EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151 (309)
Q Consensus 78 ~~~e~w~p~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~ 151 (309)
+....-.......... .. .-..+..+...+. ....+.+++ ..+|++++||.. .++...+++.+.
T Consensus 74 ~a~~~~~~~~~~~~~~g~~~~~~~~~~~lr~v~~~~~-~~~~~~v~~---ds~I~s~~DL~G------krv~~g~~gs~~ 143 (314)
T 1us5_A 74 MALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALYP-EVVHVVARK---DAGIRTVADLKG------KRVVVGDVGSGT 143 (314)
T ss_dssp EEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEEE-EEEEEEEET---TSSCSSGGGGTT------SEEECCCTTCHH
T ss_pred EEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECH-HHHEEEECC---CCCCCCHHHHCC------CEEECCCCCCCH
T ss_conf 9997508999998466875334575404027887051-133133037---777677888088------775136888513
Q ss_pred CHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHCCCCEEEEEECCC--HHH----HCCCCEEECCC
Q ss_conf 055587664035452210-01036652018999999965993699941242--232----01585140078
Q gi|254780342|r 152 NQRILDMINNNKFSLKGF-RLIEASELASFSQIRRDQRNNIPAVFLSWEPH--PIN----SDLNIHYLPGG 215 (309)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~-~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~--~~~----~~~dl~~Ledp 215 (309)
.......++.+++..+.. .+...+ ..+...++.+|+.++++...++ ..+ ...++++|.-+
T Consensus 144 ~~~~~~~l~~~g~~~~d~~~v~~~~----~~~~~~al~~g~iDa~~~~~~~p~~~i~~~~~~~~~~ll~~~ 210 (314)
T 1us5_A 144 EQNARQILEAYGLTFDDLGQAIRVS----ASQGIQLMQDKRADALFYTVGLGASAIQQLALTTPIALVAVD 210 (314)
T ss_dssp HHHHHHHHHHTTCCGGGSSEEECCC----HHHHHHHHHTTSCSEEEEEECTTCHHHHHHHHHSCEEECCCC
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECC----HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 6689999998099834463234268----889999974797527998258984789999754862334764
No 19
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=98.15 E-value=3.3e-05 Score=52.30 Aligned_cols=215 Identities=13% Similarity=0.076 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCC----------CCCCEEEECC-CCC--------HH---HHHHHHHHHHHHHC--CCCE
Q ss_conf 95799999999999863035834----------5883799425-886--------99---99999999999610--6984
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDAD----------SCTPVRFADT-GWT--------DI---AATTAMTSVILEEI--LGYK 56 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~----------~~~~I~ig~~-~wt--------e~---~v~a~i~~~iLE~~--lGy~ 56 (309)
|||.+..++++++++|+..+... +.++|+||.. +|+ .+ -+...++..+.+.- .+++
T Consensus 3 ~~k~l~~~~~~~l~~~~~~~~~~~a~~~l~~i~~~~~l~V~~~~~~pP~~~~d~~~g~~~G~~~di~~~ia~~~~~~~~~ 82 (259)
T 2v25_A 3 FRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGVKNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK 82 (259)
T ss_dssp --------------------------CHHHHHHHHTCEEEEECSEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEEECCCCCCCEEEECCCCEEEEEEEHHHHHHHHHHCCCCCE
T ss_conf 37999999999999998723311132659999609989999828978832466789848889864765688872788757
Q ss_pred EEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHH
Q ss_conf 89985640578888514981399984046413566665530470230135668535678634464123455356555566
Q gi|254780342|r 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136 (309)
Q Consensus 57 Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~ 136 (309)
++..+.+......++.+|++|+.+.....+.. + + .....+..+......+++++.. .+.+++||.
T Consensus 83 v~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~---r----~-~~~~fs~p~~~~~~~~~~~~~~---~i~s~~dL~---- 147 (259)
T 2v25_A 83 IKLVAVNAKTRGPLLDNGSVDAVIATFTITPE---R----K-RIYNFSEPYYQDAIGLLVLKEK---KYKSLADMK---- 147 (259)
T ss_dssp EEEEECCTTTHHHHHHTTSCSEECSSCBCCHH---H----H-TTEEECSCSEEEEEEEEEEGGG---CCCSGGGCT----
T ss_pred EEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHH---H----H-HCEEECEEEECCCCCEEEECCC---CCCCHHHHC----
T ss_conf 99998337758999976996600333668978---8----1-0114220344045430220357---979978926----
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH-HHCCCCEEECCC
Q ss_conf 5442013578543200555876640354522100103665201899999996599369994124223-201585140078
Q gi|254780342|r 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI-NSDLNIHYLPGG 215 (309)
Q Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~-~~~~dl~~Ledp 215 (309)
++.+|...++.......+.....+... +++... ...++..++.+|+.+++....+-.. ..+...+.+..+
T Consensus 148 ---g~~I~v~~gs~~~~~l~~~~~~~~~~~---~~~~~~---s~~~~~~~l~~g~vDa~i~d~~~~~~~~~~~~~i~~~~ 218 (259)
T 2v25_A 148 ---GANIGVAQAATTKKAIGEAAKKIGIDV---KFSEFP---DYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS 218 (259)
T ss_dssp ---TCEEEEETTCSHHHHHHHHHHHTTCCC---EEEEES---SHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEEECSCC
T ss_pred ---CCCCCEECCCCHHHHHHHHHHHCCCCE---EEECCC---HHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCCCC
T ss_conf ---985002347707788999998708844---442142---07888765427837899735999999997397435787
Q ss_pred CCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 654677865835442777787488999998740
Q gi|254780342|r 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 216 ~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
- .+......+++ .+|+..+.+++.
T Consensus 219 ~-----~~~~~~~~~~k----~~~~l~~~ln~~ 242 (259)
T 2v25_A 219 F-----EPQSYGIVTKK----DDPAFAKYVDDF 242 (259)
T ss_dssp C-----SEEEECCEEET----TCHHHHHHHHHH
T ss_pred C-----CCEEEEEEEEC----CCHHHHHHHHHH
T ss_conf 7-----73269999958----999999999999
No 20
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=98.02 E-value=0.00015 Score=48.01 Aligned_cols=207 Identities=12% Similarity=0.043 Sum_probs=110.3
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEC
Q ss_conf 8379942588699999999999996106984899856-405788885149813999840464135666655304702301
Q gi|254780342|r 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104 (309)
Q Consensus 26 ~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~ 104 (309)
++|+||....+-+.+..+.++..+++. ||++|++.. +....-.||.+|+||+-.--..|....+-.+ ....++.++
T Consensus 1 k~i~vg~~~~p~~~~~~e~vk~~~k~~-Gi~vevv~f~D~~~~N~AL~~GeiDaN~fQh~~yl~~~n~~--~g~~L~~v~ 77 (245)
T 3ir1_A 1 KEIVFGTTVGDFGDMVKEQIQPELEKK-GYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKE--HNLDITEVF 77 (245)
T ss_dssp CEEEEEEETTHHHHHHHHTHHHHHHTT-TCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHH--HTCCEEEEE
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHCCCCCEEHHCCHHHHHHHHHH--CCCCEEEEE
T ss_conf 959998078987999999988999965-97699999568521779986699652312279999999998--599669986
Q ss_pred CCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHH---------HHHH-------CCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 35668535678634464123455356555566---------5442-------0135785432005558766403545221
Q gi|254780342|r 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK---------ELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKG 168 (309)
Q Consensus 105 ~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~---------~~~~-------~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 168 (309)
..+..- .+++.. .+++++++++-+. ..+. .++...++.........-+......+
T Consensus 78 ~~~~~p-~glYS~------k~ksl~dlp~Ga~IaIpnD~sn~~RaL~lL~~~GlI~lk~~~~~~~~t~~DI~~Npk~l-- 148 (245)
T 3ir1_A 78 QVPTAP-LGLYPG------KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAENLKNI-- 148 (245)
T ss_dssp ECCBCC-CEEEES------SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEECTTCC--
T ss_pred EEEECC-EEEECC------CCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCC--
T ss_conf 654424-276516------86866567999989974586589999999987893896589886647764541556466--
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCE--EECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHH
Q ss_conf 001036652018999999965993699941242232015851--400786546778658354427777874889999987
Q gi|254780342|r 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH--YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246 (309)
Q Consensus 169 ~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~--~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~ 246 (309)
++++...+.+ .+++ .+.++...|.+...-...+.. ...+|.. +|....++|++- ++.|.+.++.+
T Consensus 149 -~~~ev~~a~l----~~al--~dvD~avi~~~~~~~agl~~~~~l~~e~~~-----~y~~~~vvr~~d-~d~~~ik~l~~ 215 (245)
T 3ir1_A 149 -KIVELEAAQL----PRSR--ADVDFAVVNGNYAISSGMKLTEALFQEPSF-----AYVNWSAVKTAD-KDSQWLKDVTE 215 (245)
T ss_dssp -EEEEECGGGS----GGGG--GTSSEEEECHHHHHHTTCCGGGCSEECCCC-----TTCCEEEEEGGG-TTCHHHHHHHH
T ss_pred -EEEECCHHHH----HHHC--CCCCEEEECCHHHHHCCCCHHHCEEECCCC-----CEEEEEEEECCC-CCCHHHHHHHH
T ss_conf -5787688885----5532--567789971406978797823400107888-----728999980766-79899999999
Q ss_pred HCCCCHHHHHHHH
Q ss_conf 4089989999999
Q gi|254780342|r 247 NIKFSVALENEMM 259 (309)
Q Consensus 247 ~~~ls~~~~~~l~ 259 (309)
-+ ..+++.+..
T Consensus 216 a~--~s~~v~~~i 226 (245)
T 3ir1_A 216 AY--NSDAFKAYA 226 (245)
T ss_dssp HT--TSHHHHHHH
T ss_pred HH--CCHHHHHHH
T ss_conf 97--799999999
No 21
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=97.97 E-value=0.00021 Score=47.09 Aligned_cols=176 Identities=11% Similarity=0.051 Sum_probs=98.7
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHH---HHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCC
Q ss_conf 588379942588699999999999---996106984899856-4057888851498139998404641356666553047
Q gi|254780342|r 24 SCTPVRFADTGWTDIAATTAMTSV---ILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS 99 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~v~a~i~~~---iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~ 99 (309)
+.++|+||.....++..+...+.- .|++.+|++|++... +...+.++|.+|++|+..-. |. .... ......
T Consensus 2 d~~~l~fg~~p~~~~~~~~~~~~pl~~~L~~~lG~~V~~~~~~dy~~~ieal~~g~vDia~~~--~~-~~~~--a~~~~~ 76 (310)
T 3n5l_A 2 DQPVINFGIISTESSQNLKSIWEPFLKDMSQQTGYQVKAFFAPDYAGIIQGMRFDKVDIAWYG--NK-AAME--AVDRAH 76 (310)
T ss_dssp CCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHSSEEEEECCSSHHHHHHHHHTTSCSEEECC--HH-HHHH--HHHHSC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEC--CH-HHHH--HHHCCC
T ss_conf 998699997789999999999999999999976995799975999999999976998689989--28-9999--986059
Q ss_pred EEEEC--CCC---CCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCC-CCCCCCCCHHHH--HHHHHCCCCCC-CEE
Q ss_conf 02301--356---6853567863446412345535655556654420135-785432005558--76640354522-100
Q gi|254780342|r 100 IKLVA--ENL---QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRIL--DMINNNKFSLK-GFR 170 (309)
Q Consensus 100 ~~~~~--~~~---~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g-~~~~~~~~~~~~--~~~~~~~l~~~-~~~ 170 (309)
...+. ... .+....++|+. ...+++++||.... ++..++ .++........+ ..+...++... ++.
T Consensus 77 ~~~~~~~~~~~g~~~y~s~liv~~---ds~i~sl~DL~gk~---kg~~~a~~d~~Stsg~l~p~~~l~~~~gi~~~~~f~ 150 (310)
T 3n5l_A 77 GEIFAQTVAASGAPGYWSLLIANK---DSKIDSLEDMLANA---KSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFK 150 (310)
T ss_dssp EEEEEEEEETTCCSEEEEEEEEET---TCSCCSHHHHHHTG---GGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSS
T ss_pred CEEEEEEECCCCCCCCEEEEEEEC---CCCCCCHHHHHHHC---CCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 805665203478876108999968---87766577774100---000002478763278899999999864998400423
Q ss_pred EE-CCCCCCHHHHHHHHHHCCCCEEEEEECCCHHH-------HCCCCEEECC
Q ss_conf 10-36652018999999965993699941242232-------0158514007
Q gi|254780342|r 171 LI-EASELASFSQIRRDQRNNIPAVFLSWEPHPIN-------SDLNIHYLPG 214 (309)
Q Consensus 171 ~~-~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~-------~~~dl~~Led 214 (309)
.+ .++ ......|+.+|+.++...+++.+.. ..-+++++.-
T Consensus 151 ~v~~~s----h~~~~~aV~~G~vDaa~~~~~~~~~~~~~~~~~~~~lrvI~~ 198 (310)
T 3n5l_A 151 RTLNSS----HEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWK 198 (310)
T ss_dssp EEEECC----HHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEE
T ss_pred EEECCC----HHHHHHHHHCCCCCEEEECHHHHHHHHHHCHHHHHCCEEEEE
T ss_conf 476078----388999998699878985179999999847044516269986
No 22
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=97.92 E-value=0.00075 Score=43.41 Aligned_cols=254 Identities=8% Similarity=-0.013 Sum_probs=120.8
Q ss_pred CCCCCCEEEECC---CCCHHHHHHHHHHHHHHHCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEE---ECCCC--
Q ss_conf 345883799425---886999999999999961069848998--5----640578888514981399984---04641--
Q gi|254780342|r 22 ADSCTPVRFADT---GWTDIAATTAMTSVILEEILGYKTNIK--L----LAVPVTFRSLKNKGIDIFMGY---WYPSL-- 87 (309)
Q Consensus 22 ~~~~~~I~ig~~---~wte~~v~a~i~~~iLE~~lGy~Ve~~--~----~~~~~~~~al~~G~iD~~~e~---w~p~~-- 87 (309)
+....++++++. +-+.........+..+|+..|.++++. + ++...+++++..|.+|+..-. +....
T Consensus 28 aa~~~tlr~a~~~p~~~~~~~~~~~~fa~~V~e~T~G~v~i~~~~~g~Lg~~~e~~e~v~~G~vd~~~~~~~~~~~~~p~ 107 (365)
T 2hzl_A 28 SAPKVTWRLASSFPKSLDTIFGGAEVLSKMLSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYWGKDPT 107 (365)
T ss_dssp ----CEEEEEESSCTTCTTTTHHHHHHHHHHHHHTTTSSEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGGGTTTCTH
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCE
T ss_conf 26656999980699988637799999999999975991999996186436406589999769975312101124677740
Q ss_pred -------------------------HHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf -------------------------3566665530470230135668535678634464123455356555566544201
Q gi|254780342|r 88 -------------------------EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142 (309)
Q Consensus 88 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~ 142 (309)
.........+.....+.....+....++. ...+.+.+|++. ..
T Consensus 108 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~-----~~pi~~~~DlkG-------~k 175 (365)
T 2hzl_A 108 FALAAAVPFSLSARGINAWHYHGGGIDLYNEFLSQHNIVAFPGGNTGVQMGGWF-----RREINTVADMQG-------LK 175 (365)
T ss_dssp HHHTTCCTTCCCHHHHHHHHHHSSHHHHHHHHHGGGTEEEEEEEECCSBCCCEE-----SSCCCSTGGGTT-------CE
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEC-----CCCCCCHHHHCC-------CE
T ss_conf 456411567689899999986131177888878760717999735885045665-----988667688449-------87
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHC---CCCE-EECCCCCC
Q ss_conf 3578543200555876640354522100103665201899999996599369994124223201---5851-40078654
Q gi|254780342|r 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD---LNIH-YLPGGEEI 218 (309)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~---~dl~-~Ledp~~~ 218 (309)
+=..+ .....++.. |. ..++.+ +.+++.|+++|-++-... ++.+.... +... +...|...
T Consensus 176 iR~~~------~~~~~~~al--Ga---~pv~~~----~~Evy~ALqtGvVDg~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 239 (365)
T 2hzl_A 176 MRVGG------FAGKVMERL--GV---VPQQIA----GGDIYPALEKGTIDATEW-VGPYDDEKLGFFKVAPYYYYPGWW 239 (365)
T ss_dssp EECCT------THHHHHHTT--TC---EEECCC----TTSHHHHHHHTSCSEECC-SCHHHHHHHTGGGTCCEEEECBTT
T ss_pred ECCCC------HHHHHHHHC--CC---EEEECC----CCHHHHHHHHCCEEEEEC-CCHHHHHHHCCHHEEEEEECCCCC
T ss_conf 30484------689999974--97---244137----502778987185215762-665578870551214688507866
Q ss_pred CCCCHHHHHHHHCHHHHHHCH-HHHHHHHHC---------CCCHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHH
Q ss_conf 677865835442777787488-999998740---------8998999999999984599----98999999999859999
Q gi|254780342|r 219 SGFGEASVYTVVRSDYLDKCP-NISRLLKNI---------KFSVALENEMMKLILNNKQ----DRQFVGRTMLRTHPDLL 284 (309)
Q Consensus 219 ~~~p~~~~~~vv~~~~~~~~P-~~~~~L~~~---------~ls~~~~~~l~~~v~~~g~----~~~~vA~~wL~~n~~~~ 284 (309)
++.+ ....++|+++-+.-| +..++++.. ....+...+....+...|. -+++.-+.|.+.-...|
T Consensus 240 ~~~~--~~~~~~N~~~w~~Lp~e~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~e~~~~~~~aa~~v~ 317 (365)
T 2hzl_A 240 EGGP--TVHFMFNKSAYEGLTPTYQSLLRTACHAADANMLQLYDWKNPTAIKSLVAQGTQLRPFSPEILQACFEAANEVY 317 (365)
T ss_dssp CSSC--EEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHH
T ss_pred CCCC--EEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf 5652--06999849998519999999999999999999999999970999999997859999899999999999999999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 98754754567713799999874
Q gi|254780342|r 285 KNWLIGVTTFDGQDPSRQLERFM 307 (309)
Q Consensus 285 ~~Wl~~~~~~~~~~~~~~~~~~~ 307 (309)
++|-+ +..+++..-+..|.++
T Consensus 318 ~e~~~--~~~~~~~i~d~~k~~~ 338 (365)
T 2hzl_A 318 AEMEA--SNPAFKKIWDSIKAFR 338 (365)
T ss_dssp HHHHH--HCHHHHHHHHHHHHHH
T ss_pred HHHHH--CCHHHHHHHHHHHHHH
T ss_conf 99980--4986999999999999
No 23
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=97.85 E-value=0.00049 Score=44.65 Aligned_cols=206 Identities=9% Similarity=0.049 Sum_probs=109.6
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCC
Q ss_conf 9942588699999999999996106984899856-405788885149813999840464135666655304702301356
Q gi|254780342|r 29 RFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107 (309)
Q Consensus 29 ~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~~~ 107 (309)
.++.++|+-+.....+..-+.|+-.|.+|+++.. +.....++|.+|++|+..-.-.+.. .... .+.....-...
T Consensus 18 ~v~a~Pl~~s~~y~g~a~gl~~~~~gl~ve~~~~~g~~~~i~al~sg~~D~a~~~~~~~~--~~~~---~~~~~~~~~~~ 92 (231)
T 2ozz_A 18 VVCAMPLPYTRLYEGLASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAE--SYLS---QNNLCIALELG 92 (231)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHTTTTSCEEEEECSCHHHHHHHHHTTSCSEEEEEHHHHH--HHHH---HSCEEEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCHHHH--HHHH---CCCCEEEEEEE
T ss_conf 379934431888888876699985398289999448399999998699477972718899--9996---69985999950
Q ss_pred CCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 68535678634464123455356555566544201357854320055587664035452210010366520189999999
Q gi|254780342|r 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187 (309)
Q Consensus 108 ~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~ 187 (309)
... +.+ .....++++.|| +++.+|.+++.... ..+...++.....+++..+. +++..|+
T Consensus 93 ~~~---~~~---~~~~~i~~~~dL-------kGk~Vgv~~~s~~~----~~L~~~g~~~~~v~~v~~~~----~~~~~al 151 (231)
T 2ozz_A 93 PHT---YVG---EHQLICRKGESG-------NVKRVGLDSRSADQ----KIMTDVFFGDSDVERVDLSY----HESLQRI 151 (231)
T ss_dssp TTS---SSC---CEEEEEETTCGG-------GCCEEEECTTCHHH----HHHHHHHHTTSCCEEEECCH----HHHHHHH
T ss_pred CCC---CCC---CCCCCCCCCCCC-------CCCEEEECCCCHHH----HHHHHCCCCCCCEEEEECCH----HHHHHHH
T ss_conf 333---224---554566783105-------99999988998699----99998499845559997488----9999998
Q ss_pred HCCCCEEEEEECCCHHHH--CCCC--EEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 659936999412422320--1585--140078654677865835442777787488999998740899899999999998
Q gi|254780342|r 188 RNNIPAVFLSWEPHPINS--DLNI--HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263 (309)
Q Consensus 188 ~~~~~~v~~~wsp~~~~~--~~dl--~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~~v~ 263 (309)
++|+.+.+. |.+..... ..+. ..+.+..... .......++|+ ....+.++++.+ +..+.+.+....+-
T Consensus 152 ~~G~iDa~v-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~vrk----~~~~l~~lv~a~-v~~~~v~~~Q~~v~ 223 (231)
T 2ozz_A 152 VKGDVDAVI-WNVVAENELTMLGLEATPLTDDPRFL--QATEAVVLTRV----DDYPMQQLLRAV-VDKHALLAHQQRVV 223 (231)
T ss_dssp HHTSCCEEE-EEC-CHHHHHHTTEEEEECCSCHHHH--HTTCEEEEEET----TCHHHHHHHHHH-CCHHHHHHHHHHHH
T ss_pred HCCCEEEEE-ECCHHHHHHHHCCCCEEEECCCCCCC--CCCEEEEEECC----CCHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 719734999-68389999863787437710466555--67549999969----989999999999-84899999999997
Q ss_pred HCCCC
Q ss_conf 45999
Q gi|254780342|r 264 NNKQD 268 (309)
Q Consensus 264 ~~g~~ 268 (309)
.....
T Consensus 224 ~~~~~ 228 (231)
T 2ozz_A 224 SGEQE 228 (231)
T ss_dssp TTSSC
T ss_pred CCCCC
T ss_conf 59638
No 24
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=97.84 E-value=5e-05 Score=51.07 Aligned_cols=248 Identities=10% Similarity=0.017 Sum_probs=119.7
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCE
Q ss_conf 3458837994258869999999999999610-698489985640578888514981399984046413566665530470
Q gi|254780342|r 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEI-LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSI 100 (309)
Q Consensus 22 ~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~-lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~ 100 (309)
.++..++|||..++....-+-. .+|+. .+.+++++.++...+.++|.+|++|+..- +. ...... ..++..
T Consensus 3 ~~~~~~lRvG~i~~~~~~Pl~~----a~e~~~~~~~~~~~~~~p~~l~~al~sG~iDi~~~---~~-~~~~~~-~~~~~~ 73 (291)
T 2nxo_A 3 DNSRTRPRVGHIQFLNCLPLYW----GLARTGTLLDFELTKDTPEKLSEQLVRGDLDIGPV---TL-VEFLKN-ADDLVA 73 (291)
T ss_dssp ----CCCEEEEECSGGGHHHHH----HHHHTSGGGGCEEEEECHHHHHHHHHTTSCSEEEE---EH-HHHHHT-GGGEEE
T ss_pred CCCCCCCEEEEECCCCCHHHHH----HHHHCCCCCCEEEEECCHHHHHHHHHCCCCCEEEC---CH-HHHHHH-CCCCEE
T ss_conf 6679884779875345345999----99826888766998689999999998699889964---29-999861-475447
Q ss_pred E-EECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCH
Q ss_conf 2-301356685356786344641234553565555665442013578543200555876640354522100103665201
Q gi|254780342|r 101 K-LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179 (309)
Q Consensus 101 ~-~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~ 179 (309)
. ..+....+......+ ..+++++|| +++.++++++..........+....+++.. +++.......
T Consensus 74 ~~~~~~~~~g~~~~~~~------~~~~~~~dL-------kGkkVav~~~ss~~~~l~~~ll~~~~~~~~-~~~~~~~~~~ 139 (291)
T 2nxo_A 74 FPDIAVGCDGPVMSCVI------VSQVPLDRL-------DGARVALGSTSRTSVRLAQLLLSERFGVQP-DYYTCPPDLS 139 (291)
T ss_dssp EEEEEEEESSCCSSEEE------EESSCTTSC-------SSSEEEEETTCSHHHHHHHHHHHHTSCCCC-EEEEECCCSS
T ss_pred EEEEEECCCCCCEEEEE------ECCCCHHHH-------CCCEEEEECCCCHHHHHHHHHHHHCCCCCE-EEEECCCCHH
T ss_conf 56654504688557897------367897896-------898599808985999999999985599980-7986787368
Q ss_pred HHHHHHHHHCCCCEEEEEECCCHHHH--CCCCEEECCCCC----CCCCCHHHHHHHHCHHHHHHCHHHHHH-HHHC----
Q ss_conf 89999999659936999412422320--158514007865----467786583544277778748899999-8740----
Q gi|254780342|r 180 FSQIRRDQRNNIPAVFLSWEPHPINS--DLNIHYLPGGEE----ISGFGEASVYTVVRSDYLDKCPNISRL-LKNI---- 248 (309)
Q Consensus 180 ~a~l~~A~~~~~~~v~~~wsp~~~~~--~~dl~~Ledp~~----~~~~p~~~~~~vv~~~~~~~~P~~~~~-L~~~---- 248 (309)
. .+...+...++..|.|..... ....+.+-|... ..+.+......+++.++.+++|++.+- ++.+
T Consensus 140 ~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~d~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~al~~a~ 215 (291)
T 2nxo_A 140 L----MMQEADAAVLIGDAALRANMIDGPRYGLDVHDLGALWKEWTGLPFVFAVWAARRDYAEREPVITRKVHEAFLASR 215 (291)
T ss_dssp C----C-----CCEEEHHHHHHHHHTHHHHTTCEEEEHHHHHHHHHSCCEEEEEEEEEHHHHHHCHHHHHHHHHHHHHHH
T ss_pred H----HHHCCCCEEEEECCCHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8----973689617983442038987405786899884786745228986300011133322227899999999999999
Q ss_pred CCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 899899999999998-459998999999999859999987547545677137999998744
Q gi|254780342|r 249 KFSVALENEMMKLIL-NNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308 (309)
Q Consensus 249 ~ls~~~~~~l~~~v~-~~g~~~~~vA~~wL~~n~~~~~~Wl~~~~~~~~~~~~~~~~~~~~ 308 (309)
++-.+.-.+....+. .-|.+++. +++|++ .++-.=+..-.+++++|++
T Consensus 216 ~~~~~~p~ea~~~~a~~~gi~~e~-~~~~~~-----------~~~y~l~~~~~~~l~~f~~ 264 (291)
T 2nxo_A 216 NLSLEEVEKVAEQAARWEAFDEDT-LAKYFT-----------TLDFRFGAPQLEAVTEFAR 264 (291)
T ss_dssp HHHHHTHHHHHHHHHTTSSSCHHH-HHHHHH-----------HSBCCCSHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHCCCHHH-HHHHHH-----------HCCCCCCHHHHHHHHHHHH
T ss_conf 988759999999998870979999-999996-----------2632699999999999999
No 25
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic solute-binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=97.67 E-value=0.0009 Score=42.91 Aligned_cols=216 Identities=14% Similarity=0.107 Sum_probs=110.8
Q ss_pred CCCCEEEECCCCCHHHHH-HHHHHHHHHHCCCCE-EEEEEC-CHHHHHHHHHCC----CCEEEEEEECCCCHHHHHHH--
Q ss_conf 588379942588699999-999999996106984-899856-405788885149----81399984046413566665--
Q gi|254780342|r 24 SCTPVRFADTGWTDIAAT-TAMTSVILEEILGYK-TNIKLL-AVPVTFRSLKNK----GIDIFMGYWYPSLEKFIAPY-- 94 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~v~-a~i~~~iLE~~lGy~-Ve~~~~-~~~~~~~al~~G----~iD~~~e~w~p~~~~~~~~~-- 94 (309)
++.+|+||....+....+ -..-+-..|+. |.+ |+++.. +...+.++|..| .+|+.+-. .|.........
T Consensus 34 Ek~~l~iG~iP~~d~aPl~VA~ekGfF~~~-GLd~V~l~~~~s~a~~~d~l~~G~~dg~lD~a~~l-ap~p~a~~~gl~~ 111 (429)
T 2i49_A 34 ETANIKLGYIPIVEAAPLIIAQEKGFFAKY-GMTGVEVSKQANWASARDNVTIGSQGGGIDGGQWQ-MPMPHLITEGIIT 111 (429)
T ss_dssp SCSEEEEEECSSGGGHHHHHHHHTTHHHHT-TCCEEEEEECSSHHHHHHHHHHTGGGTSCSEEEEC-TTHHHHHHTTTTT
T ss_pred CCCEEEEEEEECHHHHHHHHHHHCCHHHHC-CCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEECC-CCCHHHHHHHHHH
T ss_conf 774699998774436999999977948875-99758899558779999999814225762156415-4308998877762
Q ss_pred -HHCCCEEEECCCCCCCEEEEEEEHHHHHC----CCCCHHHHHHHHHHHHHCCCC--C-CCCCCCCHHHHHHHHHCCCCC
Q ss_conf -53047023013566853567863446412----345535655556654420135--7-854320055587664035452
Q gi|254780342|r 95 -LEEGSIKLVAENLQGAKYMLAVNDVGFAL----GIKSYQDIAKYKKELGAKIYG--I-EPGNEGNQRILDMINNNKFSL 166 (309)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~i~~~~dl~~~~~~~~~~~~g--~-~~~~~~~~~~~~~~~~~~l~~ 166 (309)
.....+........+ ...+.+....... ......+..+.....+++.++ . .++..........+...|+..
T Consensus 112 ~~~~~p~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~~~i~~~~dl~Gk~~~i~~~~~~s~~~~~l~~~L~~~Gldp 190 (429)
T 2i49_A 112 NGNKVPMYVLAQLITQ-GNGIAVAPMHEGKGVNLDITKAADYIKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDP 190 (429)
T ss_dssp TTCCCCEEEEEECCBC-CEEEEECGGGTTTTCSSCCGGGHHHHHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCT
T ss_pred CCCCCCEEEEHHHHCC-CCEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 3778895763323058-861785121202574421245056553188725986102678998589999999999669987
Q ss_pred C-CEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCC--CCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHH
Q ss_conf 2-1001036652018999999965993699941242232015--851400786546778658354427777874889999
Q gi|254780342|r 167 K-GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL--NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243 (309)
Q Consensus 167 ~-~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~--dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~ 243 (309)
. ..+++......| ..++++|+++.+.+|.|....... ..+.+-...+.+..-+ ....+++++|.++||++.+
T Consensus 191 ~~DV~iv~~~p~~~----~~aL~~G~IDa~~v~eP~~~~a~~~g~g~~~~~~~di~~~~~-~~vl~~~~~~~~~nPe~v~ 265 (429)
T 2i49_A 191 DTDIDLLAVPPAET----VQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHP-EEYLAIRADWVDKNPKATK 265 (429)
T ss_dssp TTTSEEEECCHHHH----HHHHHHTCCCEEEEETTHHHHHHHTTSCEEEEEHHHHSTTCC-CCEEEEEHHHHHHCHHHHH
T ss_pred CCEEEEEECCHHHH----HHHHHCCCCCEEEECCHHHHHHHHCCCCEEEECHHHHCCCCC-CEEEEECHHHHHHCHHHHH
T ss_conf 64069874678899----999965984579716449999996188736511677468986-5279963999976879999
Q ss_pred -HHHH
Q ss_conf -9874
Q gi|254780342|r 244 -LLKN 247 (309)
Q Consensus 244 -~L~~ 247 (309)
|++.
T Consensus 266 a~l~A 270 (429)
T 2i49_A 266 ALLKG 270 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 26
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=97.41 E-value=0.0046 Score=38.29 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=102.2
Q ss_pred CCCCCCCCEEEECCCCCHHHHH----HHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH----HCCCCEEEEEEECCCCHHH
Q ss_conf 5834588379942588699999----999999996106984899856-405788885----1498139998404641356
Q gi|254780342|r 20 RDADSCTPVRFADTGWTDIAAT----TAMTSVILEEILGYKTNIKLL-AVPVTFRSL----KNKGIDIFMGYWYPSLEKF 90 (309)
Q Consensus 20 ~~~~~~~~I~ig~~~wte~~v~----a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al----~~G~iD~~~e~w~p~~~~~ 90 (309)
+.+..+.+++|-. | .+.+. +.-+..-.|+++|++|+.+.. ++..+...| .+++.|+....-....
T Consensus 17 ~~~~~~~~l~Vy~--~-~~~~~~~~~~~~i~~~FE~~~gi~V~~~~~~s~~~ll~kl~~e~~~~~~DVv~~~~~~~~--- 90 (330)
T 2qry_A 17 RGSHMKPVLTVYT--Y-DSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLL--- 90 (330)
T ss_dssp -----CCEEEEEE--C-HHHHSTTSSHHHHHHHHHTTSCSEEEEEECSCHHHHHHHHHHHGGGCCCSEEEEEEGGGH---
T ss_pred CCCCCCCEEEEEE--C-CCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCHHHH---
T ss_conf 5656798799997--8-765535577779999999987978999958998999999997279998329997567789---
Q ss_pred HHHHHHCCCEEEE---------C--------CCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC-
Q ss_conf 6665530470230---------1--------356685356786344641234553565555665442013578543200-
Q gi|254780342|r 91 IAPYLEEGSIKLV---------A--------ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN- 152 (309)
Q Consensus 91 ~~~~~~~~~~~~~---------~--------~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~- 152 (309)
......+.+... . ..+.....++.+.........++|.||.+. .+++++....+.....
T Consensus 91 -~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~p~s~~dL~~p--~~~gki~~~~~~~~~~~ 167 (330)
T 2qry_A 91 -DAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVES--DQNWRVIYQDPRTSTPG 167 (330)
T ss_dssp -HHHHHHTCBCCCCCCGGGCCCTTCCCCSSCEEEEEEEEEEEEETTTCSSCCSSHHHHHHC--SSCCCEEEECTTTCHHH
T ss_pred -HHHHHCCCCCCCCCCHHHHCCCHHHCCCCEEEECCCEEEEEECCCCCCCCCCCHHHHHHC--CCCCEEEECCCCCCHHH
T ss_conf -999874752124576333036423236650320452478874332256899778998514--02412574277534778
Q ss_pred H-HHHHHHHHCC---------CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCC-----CCEEECCCCC
Q ss_conf 5-5587664035---------45221001036652018999999965993699941242232015-----8514007865
Q gi|254780342|r 153 Q-RILDMINNNK---------FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL-----NIHYLPGGEE 217 (309)
Q Consensus 153 ~-~~~~~~~~~~---------l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~-----dl~~Ledp~~ 217 (309)
. ........++ +......+..+ ......++.+|+..+...|..+...... .+.....+++
T Consensus 168 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Ge~~i~~~~~~~~~~~~~~~~~~~~~~~~~~eg 242 (330)
T 2qry_A 168 LGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKG-----WSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEG 242 (330)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHTTEEEEESS-----HHHHHHHHHTTSCSEEEEETTHHHHHHHHHCCCCEEECCCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC-----CHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEECCCC
T ss_conf 99999999857956999999998726766666-----4688876504775389995157999998557985104406787
Q ss_pred CCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 46778658354427777874889999987408998999999999
Q gi|254780342|r 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261 (309)
Q Consensus 218 ~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~~ 261 (309)
....+. .+. ++ + -.+||+++..|=++-+|.+-+..+...
T Consensus 243 ~~~~~~-~~~-I~-k--~a~~~~~A~~Fidflls~E~Q~~~a~~ 281 (330)
T 2qry_A 243 HYLQVE-VAA-RT-A--ASKQPELAQKFLQFMVSPAFQNAIPTG 281 (330)
T ss_dssp EEEEEE-EEE-EB-T--TCSCHHHHHHHHHHHTSHHHHTTHHHH
T ss_pred EEEEEH-HHH-HH-C--CCCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 077214-666-53-4--899769999999997599999999974
No 27
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=97.16 E-value=0.014 Score=35.16 Aligned_cols=244 Identities=9% Similarity=-0.040 Sum_probs=119.2
Q ss_pred CCCCCCCCCEEEEC--CCCCHHHHHHHHHHHHHHHCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEEC------
Q ss_conf 35834588379942--5886999999999999961069848998--5----64057888851498139998404------
Q gi|254780342|r 19 ARDADSCTPVRFAD--TGWTDIAATTAMTSVILEEILGYKTNIK--L----LAVPVTFRSLKNKGIDIFMGYWY------ 84 (309)
Q Consensus 19 ~~~~~~~~~I~ig~--~~wte~~v~a~i~~~iLE~~lGy~Ve~~--~----~~~~~~~~al~~G~iD~~~e~w~------ 84 (309)
+..+.+..++++++ ..-+......+..+..+++..|..+++. + ++...+++++..|.+|+..-...
T Consensus 27 ~~a~a~~~tlk~~~~~p~~~~~~~~~~~f~~~V~e~t~G~i~i~~~~~g~Lg~~~e~~~~v~~G~~d~~~~~~~~~~~~~ 106 (361)
T 2zzv_A 27 AVAQARRYRWRIQTAWDAGTVGYSLFQKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYWAGRM 106 (361)
T ss_dssp -----CCEEEEEEESSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGGTTTC
T ss_pred HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 87446746999983789987657999999999999769908999955866576799999997598752542022246766
Q ss_pred ------------CCC-------------HHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf ------------641-------------3566665530470230135668535678634464123455356555566544
Q gi|254780342|r 85 ------------PSL-------------EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139 (309)
Q Consensus 85 ------------p~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~ 139 (309)
+.. ...+.....+..+..++....+... ++.. ..+.+++||+
T Consensus 107 p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~-~~s~-----kpi~s~~Dlk------- 173 (361)
T 2zzv_A 107 PVTAFLSSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVGPVQHDLNI-IHSK-----KPIRRFEDFK------- 173 (361)
T ss_dssp GGGGGSSCCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEEEECCCCCC-EEES-----SCCCSGGGGT-------
T ss_pred CHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCEEEEEEECCCCCEE-EECC-----CCCCCCCCCC-------
T ss_conf 07777235312477699999987131367899887524629998404787503-4248-----8765730137-------
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCH--HHHCCCC-EEECC-C
Q ss_conf 201357854320055587664035452210010366520189999999659936999412422--3201585-14007-8
Q gi|254780342|r 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP--INSDLNI-HYLPG-G 215 (309)
Q Consensus 140 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~--~~~~~dl-~~Led-p 215 (309)
+..+-+.+. .....++.. |. ..++.+ +.+++.|+++|..+-...-.+.. .+.-++. +++-+ +
T Consensus 174 G~kiR~~~~-----~~~~~~~~l--Ga---~pv~i~----~~ev~~ALq~G~vDg~~~~~~~~~~~~~~~ev~ky~~~~~ 239 (361)
T 2zzv_A 174 GVKLRVPGG-----MIAEVFAAA--GA---STVLLP----GGEVYPALERGVIDAADFVGPAVNYNLGFHQVAKYIIMGP 239 (361)
T ss_dssp TCEEECCSH-----HHHHHHHHT--TC---EEECCC----GGGHHHHHHTTSCSEEECSCHHHHHHTTHHHHCSEEEECC
T ss_pred CCEEEECCC-----HHHHHHHHC--CC---CCEECC----CHHHHHHHHHCCCCEEECCCHHHHHCCCCEEEEEEEEECC
T ss_conf 957993583-----689999976--99---514458----6046789874563402146265552146314678999567
Q ss_pred CCC--CCCCHHHHHHHHCHHHHHHCH-HHHHHHHHC---------CCCHHHHHHHHHHHHHCCC----CHHHHHHHHHHH
Q ss_conf 654--677865835442777787488-999998740---------8998999999999984599----989999999998
Q gi|254780342|r 216 EEI--SGFGEASVYTVVRSDYLDKCP-NISRLLKNI---------KFSVALENEMMKLILNNKQ----DRQFVGRTMLRT 279 (309)
Q Consensus 216 ~~~--~~~p~~~~~~vv~~~~~~~~P-~~~~~L~~~---------~ls~~~~~~l~~~v~~~g~----~~~~vA~~wL~~ 279 (309)
... ++.+......++++++-+.-| +..++|... ....+...+....+...|. -+.+.-++|.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~n~~~w~~L~~e~q~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i~~~s~~e~~~~~~~ 319 (361)
T 2zzv_A 240 PETPAIHQPVDLMDFTINLNRWRSLPKPLQERFIAAVHEYSWIHYAGIQKANLEAWPKYRQAGVEVIRLSNEDVRKFRRL 319 (361)
T ss_dssp TTSSCSSCSSCCEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHH
T ss_conf 77764332220035320289997189999999999999999999999999889999999978799998999999999999
Q ss_pred HHHHHHHHHC
Q ss_conf 5999998754
Q gi|254780342|r 280 HPDLLKNWLI 289 (309)
Q Consensus 280 n~~~~~~Wl~ 289 (309)
-...|++|.+
T Consensus 320 ~~~v~~~~a~ 329 (361)
T 2zzv_A 320 AIPIWFKWAK 329 (361)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
T ss_conf 9999999985
No 28
>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis}
Probab=97.00 E-value=0.0028 Score=39.70 Aligned_cols=197 Identities=12% Similarity=0.041 Sum_probs=100.6
Q ss_pred CCCCCCCCEEEECC-CCC------H-H---HHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 58345883799425-886------9-9---999999999996106-9848998564057888851498139998404641
Q gi|254780342|r 20 RDADSCTPVRFADT-GWT------D-I---AATTAMTSVILEEIL-GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87 (309)
Q Consensus 20 ~~~~~~~~I~ig~~-~wt------e-~---~v~a~i~~~iLE~~l-Gy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~ 87 (309)
+...+.++|+||.. +|+ + + -+...|+..+.++ + |+++++++.+...+.++|.+|++|+.+.....+
T Consensus 10 a~~~~~~~i~V~~~~~~pP~~~~~~~g~~~G~~vDl~~~ia~~-l~g~~v~~~~~~~~~~~~~l~~g~~D~i~~~~~~~- 87 (258)
T 2o1m_A 10 AGQKKVQTITVGTGTQFPNICFIDEKGDLTGYDVELIKELDKR-LPHYKFTFKTMEFSNLLVSLGQHKVDIVAHQMEKS- 87 (258)
T ss_dssp ----CCEEEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHH-CTTEEEEEEECCHHHHHHHHHTTSSSEEEEEECCC-
T ss_pred CCCCCCCEEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCC-
T ss_conf 5456699899998999798069999996887599999999987-28985899978999999999779988896347678-
Q ss_pred HHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 35666655304702301356685356786344641234553565555665442013578543200555876640354522
Q gi|254780342|r 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167 (309)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 167 (309)
.+... .+....+.+......+++.+. ...+.+++||+ ++.+|...+..............+. .
T Consensus 88 ~er~~------~~~fs~~~~~~~~~~~~~~~~--~~~i~~~~dL~-------gk~igv~~g~~~~~~l~~~~~~~~~--~ 150 (258)
T 2o1m_A 88 KEREK------KFLFNKVAYNHFPLKITVLQN--NDTIRGIEDLK-------GKRVITSATSNGALVLKKWNEDNGR--P 150 (258)
T ss_dssp HHHHH------HCEECSSCCEEEEEEEEEETT--CCSCSSGGGCT-------TCEEEECSSSHHHHHHHHHHHHTTC--C
T ss_pred HHHHH------HCCCCCCCCCCCCEEEEEEEC--CCCCCCHHHCC-------CCEEEECCCCHHHHHHHHHHHHCCC--C
T ss_conf 78875------313675422355428998513--67655154457-------9889870787499999999997188--7
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCC--HHHHCCCC--EEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHH
Q ss_conf 1001036652018999999965993699941242--23201585--1400786546778658354427777874889999
Q gi|254780342|r 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH--PINSDLNI--HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243 (309)
Q Consensus 168 ~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~--~~~~~~dl--~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~ 243 (309)
......... ..++..++.+|+.+++....+. +.....+. ..+..+. .......++++ ++|++.+
T Consensus 151 ~~~~~~~~~---~~~~~~~L~~grvD~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~k----~~~~L~~ 218 (258)
T 2o1m_A 151 FEIAYEGQG---ANETANQLKSGRADATISTPFAVDFQNKTSTIKEKTVGNVL-----SNAKVYFMFNK----NEQTLSD 218 (258)
T ss_dssp SEEEECCSS---TTHHHHHHHHTSCSBEEECHHHHHHHHHHCSSCEEEEEEEE-----EEEEEEEEECT----TCHHHHH
T ss_pred CCCEECCCC---HHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEECCCC-----CCCCEEEEEEC----CCHHHHH
T ss_conf 420103688---99999998659546999169999999852788658815667-----77518999959----9999999
Q ss_pred HHHH
Q ss_conf 9874
Q gi|254780342|r 244 LLKN 247 (309)
Q Consensus 244 ~L~~ 247 (309)
.+++
T Consensus 219 ~ln~ 222 (258)
T 2o1m_A 219 DIDK 222 (258)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 29
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding domain, cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=96.83 E-value=0.025 Score=33.57 Aligned_cols=207 Identities=14% Similarity=-0.001 Sum_probs=119.8
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
...++|+||...-....++..++++.-++.=+.++++..+++..+.+.|.+|++|+..-...... ...+..
T Consensus 11 ~~~G~lrIg~~~~~a~~~Lp~~l~~f~~~~P~i~l~i~~~~~~~l~~~L~~g~~D~ai~~~~~~~---------~~~~~~ 81 (228)
T 2fyi_A 11 DTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSN---------DPQLVA 81 (228)
T ss_dssp TCCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESSSSTT---------CTTEEE
T ss_pred CCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCC---------CCCCEE
T ss_conf 99717999975889999999999999998899489999676599999986688332333112356---------865336
Q ss_pred ECCCCCCCEEEEEEEHHHH--HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf 0135668535678634464--12345535655556654420135785432005558766403545221001036652018
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGF--ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~--~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~ 180 (309)
. ........+++++.-+ ...-.++.+|.+ ..++..++++..+..........+..... .+...+ .
T Consensus 82 ~--~l~~~~~~~v~~~~~~~~~~~~i~~~dL~~------~p~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~ 148 (228)
T 2fyi_A 82 F--PWFRWHHSLLVPHDHPLTQISPLTLESIAK------WPLITYRQGITGRSRIDDAFARKGLLADI-VLSAQD----S 148 (228)
T ss_dssp E--EEEEECEEEEEETTCGGGTSSSCCHHHHTT------SCEEEECTTSTTHHHHHHHHHHTTCCCCE-EEEESS----H
T ss_pred E--EEEECCCCEECCCCCCCCCCCCCCHHHHHC------CCCCCCCCCCCHHHHHHHHHHHCCCCCCE-EEEECC----H
T ss_conf 7--732034301135642000344444788725------97212689981788899876503877753-478478----9
Q ss_pred HHHHHHHHCCCCEEEEEECCCHHH---HCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC--CCCHHHH
Q ss_conf 999999965993699941242232---01585140078654677865835442777787488999998740--8998999
Q gi|254780342|r 181 SQIRRDQRNNIPAVFLSWEPHPIN---SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALE 255 (309)
Q Consensus 181 a~l~~A~~~~~~~v~~~wsp~~~~---~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~--~ls~~~~ 255 (309)
..+...+..|..+.+ -|+... ...+++.+..+... +...+..+.++ -....|.+..|++-+ .++.+++
T Consensus 149 ~~~~~~v~~g~gi~~---lp~~~~~~~~~~~lv~l~~~~~~---~~~~~~l~~~~-~~~~~~~~~~Fi~~~~~~l~~~~~ 221 (228)
T 2fyi_A 149 DVIKTYVALGLGIGL---VAEQSSGEQEEENLIRLDTRHLF---DANTVWLGLKR-GQLQRNYVWRFLELCNAGLSVEDI 221 (228)
T ss_dssp HHHHHHHHHTSCEEE---EEGGGGSTTCCTTEEEECCTTTS---CCEEEEEEEET-TCCBCHHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHHHHCCCEEEE---CCHHHHHHHHCCCEEEEECCCCC---CCEEEEEEEEC-CCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 999999865999998---63999856545998999687777---64089999989-686799999999999864898999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780342|r 256 NEM 258 (309)
Q Consensus 256 ~~l 258 (309)
.+.
T Consensus 222 ~~~ 224 (228)
T 2fyi_A 222 KRQ 224 (228)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 30
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=96.77 E-value=0.025 Score=33.57 Aligned_cols=201 Identities=8% Similarity=0.024 Sum_probs=108.8
Q ss_pred CCCCEEEECC-CC---C---HH----HHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCCCEEEEEEECCCCHHHH
Q ss_conf 5883799425-88---6---99----9999999999961069848998564-0578888514981399984046413566
Q gi|254780342|r 24 SCTPVRFADT-GW---T---DI----AATTAMTSVILEEILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYWYPSLEKFI 91 (309)
Q Consensus 24 ~~~~I~ig~~-~w---t---e~----~v~a~i~~~iLE~~lGy~Ve~~~~~-~~~~~~al~~G~iD~~~e~w~p~~~~~~ 91 (309)
+..+|++|.. +| + +. -+...++.++.+ .+|++++.++.. ...++.+|.+|++|+......+...
T Consensus 30 ~~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dll~~i~~-~lg~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~t~~r--- 105 (267)
T 3mpk_A 30 DHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQL-RTGLDFEIIGVDTVEELIAKLRSGEADMAGALFVNSAR--- 105 (267)
T ss_dssp HCSEEEEEEETEETTTEECCTTCCCBSHHHHHHHHHHH-HHCCEEEEEEESSHHHHHHHHHHTSCSEEEEEECCGGG---
T ss_pred HCCEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHCCCEEEEECCCCCHHH---
T ss_conf 29939999848989956998999887789999999999-84995799982899999998636966599647899889---
Q ss_pred HHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE
Q ss_conf 66553047023013566853567863446412345535655556654420135785432005558766403545221001
Q gi|254780342|r 92 APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171 (309)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (309)
...+.. ...+......+++++. .+.+.++.+| ++..+|+..++.... .+....... ++
T Consensus 106 -----~~~~~~-s~p~~~~~~~~v~~~~--~~~~~~~~~l-------~g~~i~~~~g~~~~~----~l~~~~~~~---~i 163 (267)
T 3mpk_A 106 -----ESFLSF-SRPYVRNGMVIVTRQD--PDAPVDADHL-------DGRTVALVRNSAAIP----LLQRRYPQA---KV 163 (267)
T ss_dssp -----TTTEEE-CSCSEEECEEEEEESS--TTSCSSGGGC-------TTCEEEEETTCTHHH----HHHHHCTTS---EE
T ss_pred -----HHCCCC-CCCEECCCEEEEEECC--CCCCCCHHHH-------CCCCEEEECCCHHHH----HHHHHCCCC---EE
T ss_conf -----840776-7621304404542014--4345798896-------587305541540569----999728874---17
Q ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEEECCC--HHHHCCCC---EEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHH
Q ss_conf 036652018999999965993699941242--23201585---1400786546778658354427777874889999987
Q gi|254780342|r 172 IEASELASFSQIRRDQRNNIPAVFLSWEPH--PINSDLNI---HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246 (309)
Q Consensus 172 ~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~--~~~~~~dl---~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~ 246 (309)
+.-+. ..++.+++.+|+.+++....+. +.+.+..+ ++... ...++..+...+++ ++|++.+.++
T Consensus 164 ~~~~~---~~~~l~~L~~GrvDa~i~~~~~~~~~l~~~~~~~~~v~~~----~~~~~~~~~~~~~k----~~~~L~~~in 232 (267)
T 3mpk_A 164 VTADN---PSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASA----LDLPPAEIALATTR----GQTELMSILN 232 (267)
T ss_dssp EEESS---HHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEE----CSSCCEEEEEEEET----TCHHHHHHHH
T ss_pred EEECC---HHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCEEEEEC----CCCCCEEEEEEEEC----CCHHHHHHHH
T ss_conf 99806---8987789887986768427999999998389997699504----67775269999948----9999999999
Q ss_pred HC--CCCHHHHHHHHHH
Q ss_conf 40--8998999999999
Q gi|254780342|r 247 NI--KFSVALENEMMKL 261 (309)
Q Consensus 247 ~~--~ls~~~~~~l~~~ 261 (309)
+. +|+.+++.++..+
T Consensus 233 ~~L~~l~~~~~~~I~~k 249 (267)
T 3mpk_A 233 KALYSISNDELASIISR 249 (267)
T ss_dssp HHHHTSCHHHHHHHHHT
T ss_pred HHHHHCCHHHHHHHHHH
T ss_conf 99997085599999998
No 31
>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=96.71 E-value=0.0098 Score=36.18 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=82.8
Q ss_pred CCEEEECC----CCC---HH----HHHHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHH
Q ss_conf 83799425----886---99----9999999999961069---8489985640578888514981399984046413566
Q gi|254780342|r 26 TPVRFADT----GWT---DI----AATTAMTSVILEEILG---YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI 91 (309)
Q Consensus 26 ~~I~ig~~----~wt---e~----~v~a~i~~~iLE~~lG---y~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~ 91 (309)
++|+||.. +|. +. -+...+++.+-++ +| ++|+..+.+.....+++.+|++|+.+..+..+..
T Consensus 44 g~l~Vgv~~~~pP~~~~d~~G~~~G~~~Dl~~~ia~~-Lg~~~~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~--- 119 (292)
T 1xt8_A 44 GVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKE-LFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQ--- 119 (292)
T ss_dssp SSEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHH-HHSCTTCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHH---
T ss_pred CEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHH-HCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCC---
T ss_conf 9899998589899069999998873068999999998-558971799996347868999986997711355656711---
Q ss_pred HHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE
Q ss_conf 66553047023013566853567863446412345535655556654420135785432005558766403545221001
Q gi|254780342|r 92 APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171 (309)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (309)
+. ... .....+......+.+++. ..+.+++||. ++.+|...++.... .+....... ++
T Consensus 120 R~----~~~-~fs~py~~~~~~~~~~~~---~~i~~~~dL~-------g~~V~v~~g~~~~~----~l~~~~~~~---~~ 177 (292)
T 1xt8_A 120 RA----EQV-DFCSPYMKVALGVAVPKD---SNITSVEDLK-------DKTLLLNKGTTADA----YFTQNYPNI---KT 177 (292)
T ss_dssp HH----TTE-EECCCCEEEEEEEEEETT---CCCCSSGGGT-------TSEEEEETTSHHHH----HHHHHCTTS---EE
T ss_pred HH----CCC-CCCCCEEECCCEEEEECC---CCCCCHHHHH-------HCEEEEECCCHHHH----HHHHHHHHH---HH
T ss_conf 21----024-667534741513787224---5767477770-------06677515858999----999710000---00
Q ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEEECCCH
Q ss_conf 0366520189999999659936999412422
Q gi|254780342|r 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHP 202 (309)
Q Consensus 172 ~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~ 202 (309)
+.-. -..+..+++.+|+.+++..-.+..
T Consensus 178 v~~~---~~~~~~~~l~~G~vDa~~~d~~~~ 205 (292)
T 1xt8_A 178 LKYD---QNTETFAALMDKRGDALSHDNTLL 205 (292)
T ss_dssp EEES---SHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred EEEC---CCCCHHHHHHCCCEEEEEECHHHH
T ss_conf 0000---222011244369369999569999
No 32
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=96.70 E-value=0.024 Score=33.68 Aligned_cols=183 Identities=11% Similarity=-0.015 Sum_probs=86.9
Q ss_pred CCCCEEEECCCCCHHH-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 5883799425886999-999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 24 SCTPVRFADTGWTDIA-ATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~-v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
.++.|+|+...-+... .+..|... .|+++|++|++..+++..+...+.++..|++...- + .........+....
T Consensus 3 ~a~~~~~~~~~S~~~sgl~~~l~~~-Fek~tGi~V~~~~g~sg~l~~~~~~~~~d~~~~~~-~---~~~~~~~~~~~~~~ 77 (237)
T 3muq_A 3 AAEHVRLATTTSTYHSGLLDYLLPQ-FEKDTGYKVDVIAAGTGKALKMGENGDVDLVMTHA-P---KAEGTFVEKGYGVL 77 (237)
T ss_dssp --CEEEEEEEHHHHHHTHHHHHHHH-HHHHHCCEEEEEEECHHHHHHHHHTTSSSEEEECC-H---HHHHHHHHTTSEEE
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHH-HHHHHCCEEEEEECCCHHHHHHHHCCCCCEEEECC-H---HHHHHHHHCCCCCC
T ss_conf 7872799997587402279999999-99985987999977849999998668987588517-1---77898875477655
Q ss_pred ECCCCCCCEEEEEEEHHHHHCC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHHCCCCCCCEEEECCCCCC
Q ss_conf 0135668535678634464123---455356555566544201357854320055587-664035452210010366520
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGFALG---IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD-MINNNKFSLKGFRLIEASELA 178 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~~~~---i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~s~~~ 178 (309)
.... ........+........ ...+.++.+. .....+....+.......... .................. ..
T Consensus 78 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (237)
T 3muq_A 78 PRKL-MYNDFVIVGPKADPAKIKDDESVLDVFKEI--ANKNATFISRGDDSGTHKKEMGFWAQTKIEPNFGGYRSVG-QG 153 (237)
T ss_dssp EEEE-EEEEEEEEECTTCTTCCTTCSSHHHHHHHH--HHTTCCEEECCSCCHHHHHHHHHHHHHTCCSCSTTEEECC-CC
T ss_pred CCEE-EEEEEEEEEECCCCCCCCCCCHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHC-CC
T ss_conf 5234-541002787614631123451256665411--2454279877766378999999998725651034676521-01
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCC
Q ss_conf 18999999965993699941242232015851400786
Q gi|254780342|r 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216 (309)
Q Consensus 179 ~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~ 216 (309)
..........+..+++..|..+..........+..|.
T Consensus 154 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 190 (237)
T 3muq_A 154 -MGPTLNMASEMQGYTMSDRGTWLAYQNKLDLEILFQG 190 (237)
T ss_dssp -HHHHHHHHHHTTCBEEEEHHHHHHHGGGCSCEEEECC
T ss_pred -HHHHHHHCCCCCEEEEEHHHHHHHHCCCCCEEEECCC
T ss_conf -7888744145630045114578875268742796478
No 33
>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1
Probab=96.60 E-value=0.004 Score=38.69 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHCCCCEEE
Q ss_conf 95799999999999863035834588379942588699999999999996106-98489985640578888514981399
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL-GYKTNIKLLAVPVTFRSLKNKGIDIF 79 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~l-Gy~Ve~~~~~~~~~~~al~~G~iD~~ 79 (309)
|+|+.++.++++++++...+......+|+|+...... .++..+.. ..++.. |.+|++..+++...+..|.+|..|+.
T Consensus 3 ~~~~~l~~~~a~~~~~~~~~~~a~~~~i~i~gs~s~~-~l~~~l~~-~f~~~~P~~~v~~~~~gSg~~~~~l~~g~~di~ 80 (290)
T 1twy_A 3 LIRMALAAVCALLFSITTMTPFVQASEITISGSTSVA-RIMDVLAE-KYNQQHPETYVAVQGVGSTAGISLLKKGVADIA 80 (290)
T ss_dssp -------------------------CEEEEEECHHHH-HHHHHHHH-HHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHH-HHHHHHHH-HHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCC
T ss_conf 6899999999999999835430248869999605499-99999999-999888895799971686799999982686412
Q ss_pred EEE
Q ss_conf 984
Q gi|254780342|r 80 MGY 82 (309)
Q Consensus 80 ~e~ 82 (309)
.-.
T Consensus 81 ~~s 83 (290)
T 1twy_A 81 MTS 83 (290)
T ss_dssp EES
T ss_pred CCC
T ss_conf 255
No 34
>1amf_A Molybdate transport protein MODA; periplasmic, binding protein; 1.75A {Escherichia coli} SCOP: c.94.1.1 PDB: 1wod_A
Probab=96.47 E-value=0.038 Score=32.31 Aligned_cols=217 Identities=9% Similarity=-0.005 Sum_probs=103.5
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC-CEEEEEEECCCCHHHHHHHHHCCCEEEEC
Q ss_conf 83799425886999999999999961069848998564057888851498-13999840464135666655304702301
Q gi|254780342|r 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG-IDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104 (309)
Q Consensus 26 ~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~-iD~~~e~w~p~~~~~~~~~~~~~~~~~~~ 104 (309)
++|+|-...-. ..++.++. +..|++.|++|+++.+++..+...+..|. .|+..... .........+..+ ...
T Consensus 3 g~l~v~~a~s~-~~~~~~l~-~~Fek~~gi~V~~~~g~s~~l~~~l~~g~~~~~~~~~~----~~~~~~~~~~~~~-~~~ 75 (233)
T 1amf_A 3 GKITVFAAASL-TNAMQDIA-TQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISAD----QKWMDYAVDKKAI-DTA 75 (233)
T ss_dssp CEEEEEEEGGG-HHHHHHHH-HHHHHHHCCEEEEEEECHHHHHHHHHHTCCCSEEECSS----HHHHHHHHHTTCB-CGG
T ss_pred CEEEEEEECCH-HHHHHHHH-HHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCEEEECC----HHHHHHHHHCCCC-CCC
T ss_conf 77999996263-99999999-99988119779999777599999997399986899664----5556777752565-666
Q ss_pred C--CCCCCEEEEEEEHHHH--HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf 3--5668535678634464--12345535655556654420135785432005558766403545221001036652018
Q gi|254780342|r 105 E--NLQGAKYMLAVNDVGF--ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180 (309)
Q Consensus 105 ~--~~~~~~~~~~v~~~~~--~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~ 180 (309)
. ........+.++.... ....+++.++.+.....+. .++.+................+......... ....-.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~ 152 (233)
T 1amf_A 76 TRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRL-AVGDPEHVPAGIYAKEALQKLGAWDTLSPKL--APAEDV 152 (233)
T ss_dssp GCEEEEEECEEEEEETTCCCCCCCCSTTCCHHHHHTTCCE-EEECTTTCHHHHHHHHHHHHTTCHHHHGGGE--EEESSH
T ss_pred CEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHCCCHHHHCCCC--CCCCCH
T ss_conf 4245204412553034211454455425569862469938-9989987518999999999727512323010--225550
Q ss_pred HHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHH
Q ss_conf 99999996599369994124223201585140078654677865835442777787488999998740899899999
Q gi|254780342|r 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257 (309)
Q Consensus 181 a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~ 257 (309)
.........|+.++...|.............+..|.+......+.+. ++. ...+|.+.+|++=+ +|.+-+.-
T Consensus 153 ~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~~-i~k---~~~~~~A~~Fidfl-lS~e~Q~i 224 (233)
T 1amf_A 153 RGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVA-VVE---GHNNATVKAFYDYL-KGPQAAEI 224 (233)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHCSSEEEEEECCGGGSCCEEEEEE-EBT---TCCSHHHHHHHHHH-TSHHHHHH
T ss_pred HHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEECCCCCEEEEEEEE-EEC---CCCCHHHHHHHHHH-CCHHHHHH
T ss_conf 47788876246628744678898730457539857988637678899-987---99999999999997-89999999
No 35
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=96.35 E-value=0.056 Score=31.23 Aligned_cols=212 Identities=10% Similarity=-0.064 Sum_probs=95.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHCCCEEEECCC
Q ss_conf 79942588699999999999996106984899856405788885149-81399984046413566665530470230135
Q gi|254780342|r 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN 106 (309)
Q Consensus 28 I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G-~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~~ 106 (309)
|+|....-.. .++.++...- |++.|++|+++.+++..+.+.++.| ..|++... ...........+........
T Consensus 2 l~v~~~~~~~-~~~~~l~~~F-ek~tGi~V~~~~g~sg~l~~~i~~g~~~D~~~~~----~~~~~~~~~~~g~~~~~~~~ 75 (231)
T 1atg_A 2 LKVVTATNFL-GTLEQLAGQF-AKQTGHAVVISSGSSGPVYAQIVNGAPYNVFFSA----DEKSPEKLDNQGFALPGSRF 75 (231)
T ss_dssp EEEEEEGGGH-HHHHHHHHHH-HHHHCCCEEEEEECHHHHHHHHHTTCCCSEEECS----SSHHHHHHHHTTCBCTTCCE
T ss_pred EEEEEECCHH-HHHHHHHHHH-HHHHCCEEEEEECCHHHHHHHHHCCCCCCEEEEC----CHHHHHHHHHHCCCCCCCEE
T ss_conf 7999951669-9999999999-9852988999988889999999849998499966----66667889861442346426
Q ss_pred CCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHCCCC--CC-CEEEECCCCCCHHHH
Q ss_conf 668535678634464123455356555566544201357854-32005558766403545--22-100103665201899
Q gi|254780342|r 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG-NEGNQRILDMINNNKFS--LK-GFRLIEASELASFSQ 182 (309)
Q Consensus 107 ~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~l~--~~-~~~~~~~s~~~~~a~ 182 (309)
...............+...++.+|....-. ++..+++. ..............+.. +. ...+.... ....
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~i~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 148 (231)
T 1atg_A 76 -TYAIGKLVLWSAKPGLVDNQGKVLAGNGWR---HIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEAN---SVGQ 148 (231)
T ss_dssp -EEEECCEEEEESSTTTSCTTSGGGGSSSCS---CEEEECTTTCHHHHHHHHHHHHTTCHHHHHHTTCEEEES---SHHH
T ss_pred -EEECCEEEEEECCCCCCCCCHHHHCCCCCC---EEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHCEEECC---CCHH
T ss_conf -763022898624777788868882775478---799968987820689999998728225555431062102---3147
Q ss_pred HHHHHHCCCCEEEEEECCCHHHHCCCC--EEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHH
Q ss_conf 999996599369994124223201585--14007865467786583544277778748899999874089989999
Q gi|254780342|r 183 IRRDQRNNIPAVFLSWEPHPINSDLNI--HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256 (309)
Q Consensus 183 l~~A~~~~~~~v~~~wsp~~~~~~~dl--~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~ 256 (309)
+..++..|+..+...|..+......+. .....|.+......+.+. +.. -.+||++++-|-.|-+|.+-+.
T Consensus 149 ~~~~v~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~---~a~n~~~A~~FidfL~S~e~Q~ 220 (231)
T 1atg_A 149 AHSQTASGAADLGFVALAQIIQAAAKIPGSHWFPPANYYEPIVQQAV-ITK---STAEKANAEQFMSWMKGPKAVA 220 (231)
T ss_dssp HHHHHHTTSSSEEEEEGGGTCCTTSCCSSEEECCCGGGSCCCEEEEE-EBT---TCSCHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHCCCCCEEEEHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEE-EEC---CCCCHHHHHHHHHHHCCHHHHH
T ss_conf 88888707753451057788987643686044158666705567799-985---9999799999999978999999
No 36
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=96.34 E-value=0.041 Score=32.13 Aligned_cols=163 Identities=12% Similarity=0.150 Sum_probs=85.6
Q ss_pred CCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHH
Q ss_conf 69848998564057888851498139998404641356666553047023013566853567863446412345535655
Q gi|254780342|r 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132 (309)
Q Consensus 53 lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~ 132 (309)
.+++++.++......+.+|.+|++|+.+.....+ .. +. ..+.. ...+......+.+++. ..+.++.+|.
T Consensus 61 ~~~~v~~~~~~~~~~~~~L~~G~~Di~~~~~~~t-~~--R~----~~~~f-s~p~~~~~~~l~~~k~---~~i~~~~dL~ 129 (287)
T 2vha_A 61 PDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNN-VE--RQ----KQAAF-SDTIFVVGTRLLTKKG---GDIKDFADLK 129 (287)
T ss_dssp TTCEEEEEECCTTTHHHHHHTTSCSEECSSCBCC-HH--HH----TTCEE-EEEEEEEEEEEEEETT---SSCCSGGGGT
T ss_pred CCEEEEEEECCHHHHHHHHHCCCCCEEECCCCCC-HH--HH----HHCCC-CCCCCCCCCEEEEECC---CCCCCHHHCC
T ss_conf 8706999987999999999869964341134466-45--65----43245-5430004725777548---9878987808
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHH--HC----
Q ss_conf 556654420135785432005558766403545221001036652018999999965993699941242232--01----
Q gi|254780342|r 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN--SD---- 206 (309)
Q Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~--~~---- 206 (309)
++.+|...+................. .+++.... ..++.+++.+|+.+++..+.+.... ..
T Consensus 130 -------g~~v~v~~gs~~~~~l~~~~~~~~~~---~~iv~~~~---~~~~~~~l~~grvD~~i~~~~~~~~~~~~~~~~ 196 (287)
T 2vha_A 130 -------GKAVVVTSGTTSEVLLNKLNEEQKMN---MRIISAKD---HGDSFRTLESGRAVAFMMDDALLAGERAKAKKP 196 (287)
T ss_dssp -------TCEEEEETTSHHHHHHHHHHHHTTCC---CEEEEESS---HHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSG
T ss_pred -------CCCEEECCCCHHHHHHHHHHHHHCCC---CCEEECCH---HHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCC
T ss_conf -------98122137866999999988873789---63465221---789999998699409996149999999965788
Q ss_pred CCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 585140078654677865835442777787488999998740
Q gi|254780342|r 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 207 ~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
-.++++..+.. ......++++ .+|+..+.+++.
T Consensus 197 ~~~~~~~~~~~-----~~~~~~av~k----~~~~L~~~in~~ 229 (287)
T 2vha_A 197 DNWDIVGKPQS-----QEAYGCMLRK----DDPQFKKLMDDT 229 (287)
T ss_dssp GGEEEESCCSC-----EEEEEEEECT----TCHHHHHHHHHH
T ss_pred CCEEEECCCCC-----CCEEEEEEEC----CCHHHHHHHHHH
T ss_conf 86799378777-----6318999948----999999999999
No 37
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis}
Probab=96.31 E-value=0.0065 Score=37.31 Aligned_cols=159 Identities=8% Similarity=-0.020 Sum_probs=84.1
Q ss_pred HHHCCCCCCCCCEEEECC-CC---C---HH----HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 630358345883799425-88---6---99----9999999999961069848998564057888851498139998404
Q gi|254780342|r 16 ISYARDADSCTPVRFADT-GW---T---DI----AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84 (309)
Q Consensus 16 ~~~~~~~~~~~~I~ig~~-~w---t---e~----~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~ 84 (309)
|+..+...++++++||.. +| + +. -+...|++.+.+ .+|++++++..+...+..++.+|++|+......
T Consensus 1 c~~~~~~~~~~~l~Vg~~~~~pP~~~~~~~G~~~G~~vDi~~~ia~-~lg~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~ 79 (242)
T 3del_B 1 CLKEGGDSNSEKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISN-KLGKTLDVREFSFDALILNLKQHRIDAVITGMS 79 (242)
T ss_dssp ----------CEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHH-HHTCEEEEEECCGGGHHHHHHTTSSSEECSSBB
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHH-HHCCCEEEEECCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9776777889969999899889915899999888729999999999-969976999789899999997598661003576
Q ss_pred CCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 64135666655304702301356685356786344641234553565555665442013578543200555876640354
Q gi|254780342|r 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164 (309)
Q Consensus 85 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 164 (309)
. ..... ......+.+......+++... ...+.++.++. ++.+|...++.. ...++.+
T Consensus 80 ~-~~~r~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~-------~~~Vgv~~gs~~----~~~l~~~-- 136 (242)
T 3del_B 80 I-TPSRL-------KEILMIPYYGEEIKHLVLVFK--GENKHPLPLTQ-------YRSVAVQTGTYQ----EAYLQSL-- 136 (242)
T ss_dssp C-CHHHH-------TTEEEEEEEEEEESEEEEEEE--SCCSCCCCGGG-------SSCEEEETTSHH----HHHHHHS--
T ss_pred C-CHHHH-------HHCCCCCCCCCCCCEEEEEEC--CCCCCHHHHHC-------CCCEEEECCCHH----HHHHHHC--
T ss_conf 9-98898-------313678643235532688631--54332134420-------220024257435----8999856--
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH
Q ss_conf 522100103665201899999996599369994124223
Q gi|254780342|r 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203 (309)
Q Consensus 165 ~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~ 203 (309)
. +.+++.-+ -..++..++.+|+.+++....+...
T Consensus 137 ~--~~~i~~~~---~~~~~~~~L~~griD~~i~~~~~~~ 170 (242)
T 3del_B 137 S--EVHIRSFD---STLEVLMEVMHGKSPVAVLEPSIAQ 170 (242)
T ss_dssp T--TCCEEEES---SHHHHHHHHHTTSSSEEEECHHHHH
T ss_pred C--CCEEEEEE---CCCHHHHHHHCCCEEEEEECHHHHH
T ss_conf 5--87079861---4531256886397439996699999
No 38
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, structural genomics, PSI-2; HET: GTT CIT; 2.41A {Wolinella succinogenes}
Probab=96.29 E-value=0.061 Score=31.01 Aligned_cols=107 Identities=14% Similarity=0.059 Sum_probs=60.0
Q ss_pred CCCCEEEECCCCCHHH-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 5883799425886999-999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 24 SCTPVRFADTGWTDIA-ATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~-v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
....+||....-+... ++.+|... .|+++|++|++..+++..+...+..|+.|+....- .....+..+.+....
T Consensus 3 aa~~l~i~~~~S~~~~~l~~~l~~~-Fe~~tgikV~~~~~~Sg~l~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~ 77 (242)
T 3kn3_A 3 AAAELRMATTTSTDNTGLLDVLAPA-YKKDTGVDLKWVAVGTGNALKLGENCDVDVVFVHA----PKVELEYVEKGFGID 77 (242)
T ss_dssp -CCEEEEEEEHHHHHHTHHHHHHHH-HHHHHSCEEEEEEECHHHHHHHHHTTCCSEEEECC----HHHHHHHHHHTSEEE
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHH-HHHHHCCEEEEEECCCHHHHHHHHCCCCCEEEECC----CHHHHHHHHHCCCCC
T ss_conf 7756899997277523149999999-99986977999977849999988647885543045----054799987157741
Q ss_pred ECCCCCCCEEEEEEEHHH-HHCCCCCHHHHHHHHH
Q ss_conf 013566853567863446-4123455356555566
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVG-FALGIKSYQDIAKYKK 136 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~-~~~~i~~~~dl~~~~~ 136 (309)
........ ..+.++... .......+.++.+...
T Consensus 78 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (242)
T 3kn3_A 78 RTPVMYND-FVIIGNPSFKQKFTGMSVAEAFKLIE 111 (242)
T ss_dssp EEEEECSC-EEEEECTHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHCC-EEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 23110023-03775247765444311455433554
No 39
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=96.27 E-value=0.038 Score=32.37 Aligned_cols=59 Identities=7% Similarity=-0.143 Sum_probs=52.9
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEE
Q ss_conf 88379942588699999999999996106984899856405788885149813999840
Q gi|254780342|r 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83 (309)
Q Consensus 25 ~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w 83 (309)
.++|+||....-+.+++..++....++.=+.++++..+.+..+.+.|.+|++|+..-+-
T Consensus 3 ~G~lrIG~~~s~~~~~lp~~l~~f~~~~P~v~l~i~~~~~~~l~~~l~~g~~D~~i~~~ 61 (219)
T 3jv9_A 3 EGAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp CCCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEES
T ss_pred CEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEECC
T ss_conf 02899997778899999999999999888928999988737777656169588875026
No 40
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=96.20 E-value=0.067 Score=30.73 Aligned_cols=216 Identities=7% Similarity=-0.024 Sum_probs=102.6
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 588379942588699999999999996106984899856405788885149-8139998404641356666553047023
Q gi|254780342|r 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G-~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
...||+|-...-.. .++.+|.+. .|++.|++|+++.+++..+...++.| ..|++.... ..........+....
T Consensus 21 ~~~~ltVy~a~s~~-~~~~~i~~~-Fe~~tgi~V~~~~~gs~~l~~~i~~g~~~d~~~~~~----~~~~~~~~~~~~~~~ 94 (253)
T 3gzg_A 21 MTAPVTVFAAASLK-ESMDEAATA-YEKATGTPVRVSYAASSALARQIEQGAPADVFLSAD----LEWMDYLQQHGLVLP 94 (253)
T ss_dssp -CCCEEEEEEGGGH-HHHHHHHHH-HHHHHSCCEEEEEECHHHHHHHHHTTCCCSEEECSS----HHHHHHHHHTTSSCG
T ss_pred CCCCEEEEEECCHH-HHHHHHHHH-HHHHHCCEEEEEECCHHHHHHHHHCCCCCEEEEECC----HHHHHHHHHCCCCCC
T ss_conf 78778999815709-999999999-988429779999787599999997399965999675----767888751575222
Q ss_pred ECCC-CCCCEEEEEEEHHHHH----CCCCCHHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHHHHCCCCCCC--EEEECC
Q ss_conf 0135-6685356786344641----2345535655556654420135785432-005558766403545221--001036
Q gi|254780342|r 103 VAEN-LQGAKYMLAVNDVGFA----LGIKSYQDIAKYKKELGAKIYGIEPGNE-GNQRILDMINNNKFSLKG--FRLIEA 174 (309)
Q Consensus 103 ~~~~-~~~~~~~~~v~~~~~~----~~i~~~~dl~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~l~~~~--~~~~~~ 174 (309)
.... .......+.+...... +...++.++.+.. .++....+... ........+...+..... ......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~p~~~~~g~~~~~~l~~~g~~~~~~~~~~~~~ 170 (253)
T 3gzg_A 95 AQRHNLLGNTLVLVAPASSKLRVDPRAPGAIAKALGEN----GRLAVGQTASVPAGSYAAAALRKLGQWDSVSNRLAESE 170 (253)
T ss_dssp GGEEEEEEECEEEEEETTCCCCCCTTSTTHHHHHTTTT----CCEEEECTTTSHHHHHHHHHHHHTTCHHHHTTSEEEES
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCC----CEEEEECCCCCCHHHHHHHHHHHHCHHHHHCCCCCCCC
T ss_conf 43000014630024421332345865403288615888----75999689888359999999999572444133211045
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHH
Q ss_conf 65201899999996599369994124223201585140078654677865835442777787488999998740899899
Q gi|254780342|r 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254 (309)
Q Consensus 175 s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~ 254 (309)
. .......+..++..+...|..+............-|++.+..-.+.+. +++. ..||++.+|++=+ +|.+-
T Consensus 171 ~----~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~P~eg~~~~~~~~a-vvk~---a~~~~A~~Fidfl-lS~e~ 241 (253)
T 3gzg_A 171 S----VRAALMLVSRGEAPLGIVYGSDARADAKVRVVATFPDDSHDAIVYPVA-ALKN---SNNPATAAFVSWL-GSKPA 241 (253)
T ss_dssp S----HHHHHHHHHTTSSSEEEEEHHHHHHCTTEEEEEECCGGGSCCEEEEEE-ECTT---CCCTTHHHHHHHT-TSHHH
T ss_pred C----CCCEEEEECCCCCCEEEEHHHHHHHHCCCCEEEEECCCCCEEEEEEEE-EECC---CCCHHHHHHHHHH-CCHHH
T ss_conf 5----540035421465537750434898846886599968988457787699-9889---9999999999997-89999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780342|r 255 ENEM 258 (309)
Q Consensus 255 ~~~l 258 (309)
+.-+
T Consensus 242 Q~il 245 (253)
T 3gzg_A 242 KAIF 245 (253)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 41
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=95.98 E-value=0.017 Score=34.66 Aligned_cols=189 Identities=12% Similarity=0.041 Sum_probs=97.0
Q ss_pred CCCEEEECC-C---CC---H----H---HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHH
Q ss_conf 883799425-8---86---9----9---9999999999961069848998564057888851498139998404641356
Q gi|254780342|r 25 CTPVRFADT-G---WT---D----I---AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF 90 (309)
Q Consensus 25 ~~~I~ig~~-~---wt---e----~---~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~ 90 (309)
.+.|+||.. + |+ + + -+...++..+.++ +|++++++..+...++.+|.+|++|+.+..- +.....
T Consensus 20 ~~~l~V~~~~~~~P~~~~~~~~~~g~~~G~~vDl~~~ia~~-lg~~~~~~~~~~~~~~~~l~~g~~D~~~~~~-~~~~~r 97 (271)
T 2iee_A 20 KGKIVVATSGTLYPTSYHDTDSGSDKLTGYEVEVVREAAKR-LGLKVEFKEMGIDGMLTAVNSGQVDAAANDI-DVTKDR 97 (271)
T ss_dssp HTEEEEEECSCBTTTBEEETTTTCCEEECHHHHHHHHHHHH-TTCEEEEEECCSTTHHHHHHHTSSSEECSSC-BCCHHH
T ss_pred CCEEEEEECCCCCCCEEECCCCCCCCEEEEHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHCCCCCEEECCC-CCCHHH
T ss_conf 99799998899889678836899996788799999999998-3996489989999999999769977440245-468788
Q ss_pred HHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf 66655304702301356685356786344641234553565555665442013578543200555876640354522100
Q gi|254780342|r 91 IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170 (309)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (309)
...+.... .+......+++... ....+.++++|. +..++...+... ...++.+... ..
T Consensus 98 ------~~~~~~s~-p~~~~~~~~~~~~~-~~~~~~~~~dl~-------g~~v~v~~g~~~----~~~l~~~~~~---~~ 155 (271)
T 2iee_A 98 ------EEKFAFST-PYKYSYGTAIVRKD-DLSGIKTLKDLK-------GKKAAGAATTVY----MEVARKYGAK---EV 155 (271)
T ss_dssp ------HTTEEECC-CSEEEEEEEEECTT-TGGGCSSGGGGT-------TCEEESCTTSHH----HHHHHHTTCE---EE
T ss_pred ------HHHHHCCC-CCCCCCCCEEEECC-CCCCCCCHHHHC-------CCEEEECCCCHH----HHHHHHCCCC---CE
T ss_conf ------76542056-62215762367504-777779878807-------945897168589----9999970898---58
Q ss_pred EECCCCCCHHHHHHHHHHCCCCEEEEEECCC--HHHHCC---CCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHH
Q ss_conf 1036652018999999965993699941242--232015---85140078654677865835442777787488999998
Q gi|254780342|r 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPH--PINSDL---NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245 (309)
Q Consensus 171 ~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~--~~~~~~---dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L 245 (309)
+.... ...++..++.+|+.+++....+- +.+..+ +++...+.. + .+.....++++ .+|++.+.|
T Consensus 156 i~~~~---s~~~~l~~L~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~k----~~~~L~~~l 224 (271)
T 2iee_A 156 IYDNA---TNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPDIK--Y--MPNKQALVMKK----SNAALQKKM 224 (271)
T ss_dssp ECSSC---CHHHHHHHHHHTSSCEEEEEHHHHHHHHHHCTTSSCEECSSCC--E--EEEEECCEEET----TCHHHHHHH
T ss_pred EEEEC---CHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEECCCCC--C--CCCEEEEEEEC----CCHHHHHHH
T ss_conf 99823---6088999997695349992499999999868997468666766--5--66128999948----999999999
Q ss_pred HHC
Q ss_conf 740
Q gi|254780342|r 246 KNI 248 (309)
Q Consensus 246 ~~~ 248 (309)
++.
T Consensus 225 n~~ 227 (271)
T 2iee_A 225 NEA 227 (271)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 42
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=95.92 E-value=0.05 Score=31.56 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=99.4
Q ss_pred CCCCCEEEEC-CC---CC----HH---HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHH
Q ss_conf 4588379942-58---86----99---99999999999610698489985640578888514981399984046413566
Q gi|254780342|r 23 DSCTPVRFAD-TG---WT----DI---AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI 91 (309)
Q Consensus 23 ~~~~~I~ig~-~~---wt----e~---~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~ 91 (309)
.+.++|+||. .+ |+ .+ -+...++..+.++ +|++++++..+..-+..+|.+|++|+.+.....+. .
T Consensus 18 ~~~~~l~vg~~~~~pP~~~~~~~g~~~G~~vdl~~~i~~~-lg~~v~~~~~~~~~~~~~l~~g~~Di~~~~~~~~~-~-- 93 (268)
T 3hv1_A 18 TKEKKIKIGFDATFVPMGYEEKDGSYIGFDIDLANAVFKL-YGIDVEWQAIDWDMKETELKNGTIDLIWNGYSVTD-E-- 93 (268)
T ss_dssp HHHTEEEEEECTEETTTEEECTTSCEECHHHHHHHHHHHT-TTCEEEEEECCGGGHHHHHHHTSCSEECSSCBCCH-H--
T ss_pred HCCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHH-HCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCH-H--
T ss_conf 6099799998789889558999998887299999999999-69965751588899999998699760023266785-4--
Q ss_pred HHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE
Q ss_conf 66553047023013566853567863446412345535655556654420135785432005558766403545221001
Q gi|254780342|r 92 APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171 (309)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (309)
+. . .......+......+++++. ..+.++++|. +..+|...+...............-......+
T Consensus 94 r~----~-~~~~s~py~~~~~~~v~~~~---~~~~~~~dl~-------~~~i~v~~gs~~~~~~~~~~~~~~~~~~~~~i 158 (268)
T 3hv1_A 94 RK----Q-SADFTEPYMVNEQVLVTKKS---SGIDSVAGMA-------GKTLGAQAGSSGYDAFNASPKILKDVVANQKV 158 (268)
T ss_dssp HH----T-TCEECCCCEEECEEEEEEGG---GCCCSSGGGT-------TCCEEEETTCHHHHHHHHCTTTTTTTSGGGCE
T ss_pred HH----H-CEEECCCCCCCCEEEEEECC---CCCCCHHHHC-------CCCEEEECCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 44----1-15632121356436898689---9999978957-------98238866850999999866555431667324
Q ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH--HHCCC----CEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHH
Q ss_conf 03665201899999996599369994124223--20158----5140078654677865835442777787488999998
Q gi|254780342|r 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPI--NSDLN----IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245 (309)
Q Consensus 172 ~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~--~~~~d----l~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L 245 (309)
+.-+. ..++..++.+|+.+++....+-.. ..+.+ ++.+..+. ++.....++++ ++|++.+.+
T Consensus 159 ~~~~~---~~~~l~~L~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~k----~~~~L~~~i 226 (268)
T 3hv1_A 159 VQYST---FTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGY-----EGESFAVGARK----VDKTLIKKI 226 (268)
T ss_dssp EEESS---HHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSS-----CCEEECCEECT----TCHHHHHHH
T ss_pred EECCC---HHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCEEECCCCC-----CCCEEEEEEEC----CCHHHHHHH
T ss_conf 40399---9999999976975799943899999998589888303337777-----77438999818----999999999
Q ss_pred HH
Q ss_conf 74
Q gi|254780342|r 246 KN 247 (309)
Q Consensus 246 ~~ 247 (309)
++
T Consensus 227 n~ 228 (268)
T 3hv1_A 227 NQ 228 (268)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 43
>3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae} PDB: 3n26_A*
Probab=95.80 E-value=0.03 Score=32.96 Aligned_cols=156 Identities=11% Similarity=0.023 Sum_probs=85.5
Q ss_pred CCCCCCEEEEC-CCCC-------H---HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHH
Q ss_conf 34588379942-5886-------9---99999999999961069848998564057888851498139998404641356
Q gi|254780342|r 22 ADSCTPVRFAD-TGWT-------D---IAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF 90 (309)
Q Consensus 22 ~~~~~~I~ig~-~~wt-------e---~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~ 90 (309)
-...++++||. .+|+ . .-+...++..+.++ +|++++++..+.....++|.+|.+|+........ ...
T Consensus 6 ~~~~~~l~Vg~~~~~~P~~~~~~~g~~~G~~~dl~~~ia~~-lg~~~~~~~~~~~~~~~~l~~g~~d~i~~~~~~~-~~r 83 (246)
T 3g41_A 6 IDRNRIWIVGTNATYPPFEYVDAQGEVVGFDIDLAKAISEK-LGKQLEVREFAFDALILNLKKHRIDAILAGMSIT-PSR 83 (246)
T ss_dssp -CCCCEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHH-HTCEEEEEECCGGGHHHHHHTTSSSEECSCCBCC-HHH
T ss_pred HCCCCCEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCC-HHH
T ss_conf 20589599998998899348999998887299999999999-6996699988989999999759988796623158-666
Q ss_pred HHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf 66655304702301356685356786344641234553565555665442013578543200555876640354522100
Q gi|254780342|r 91 IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170 (309)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (309)
. ........+......+++.... ...+.++.+|. ++.+|...+.... ..+... .+ .+
T Consensus 84 ------~-~~~~fs~~~~~~~~~l~~~~~~-~~~~~~~~~l~-------~~~Igv~~gs~~~----~~l~~~-~~---~~ 140 (246)
T 3g41_A 84 ------Q-KEIALLPYYGDEVQELMVVSKR-SLETPVLPLTQ-------YSSVAVQTGTYQE----HYLLSQ-PG---IC 140 (246)
T ss_dssp ------H-TTSEEEEEECCCBCEEEEEEET-TCCSCSCCGGG-------SSCEEEETTSHHH----HHHHTS-TT---CC
T ss_pred ------C-CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-------CCEEEEEECCHHH----HHHHHC-CC---CE
T ss_conf ------0-3434342333334332112222-34444100123-------4058885153799----999838-87---53
Q ss_pred EECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 10366520189999999659936999412422320
Q gi|254780342|r 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205 (309)
Q Consensus 171 ~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~ 205 (309)
++.-. -..++..++.+|+.+++..+.+.....
T Consensus 141 ~~~~~---~~~~~~~~L~~GriD~~i~~~~~~~~~ 172 (246)
T 3g41_A 141 VRSFD---STLEVIMEVRYGKSPVAVLEPSVGRVV 172 (246)
T ss_dssp EEEES---CHHHHHHHHHTTSSSEEEECHHHHHHH
T ss_pred EEEEC---HHHHHHHHHHCCCCCHHHHCHHHHHHH
T ss_conf 89834---078788898759843113069999999
No 44
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, thermophilic bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=95.80 E-value=0.082 Score=30.18 Aligned_cols=165 Identities=10% Similarity=0.095 Sum_probs=90.2
Q ss_pred CCCCEEEEC-CCCC-----H----HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHH
Q ss_conf 588379942-5886-----9----99999999999961069848998564057888851498139998404641356666
Q gi|254780342|r 24 SCTPVRFAD-TGWT-----D----IAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93 (309)
Q Consensus 24 ~~~~I~ig~-~~wt-----e----~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~ 93 (309)
+.++|+||+ .+|+ + .-+...|+.++.++ +|++++++..+...++.+|.+|++|+.+..+..+. ...
T Consensus 40 ~~~~l~Vg~~~~~~P~~~~~~G~~~G~~vDl~~~ia~~-lg~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~-~R~-- 115 (272)
T 2pvu_A 40 TKKKVVVGTDAAFAPFEYMQKGKIVGFDVDLLDAVMKA-AGLDYELKNIGWDPLFASLQSKEVDMGISGITITD-ERK-- 115 (272)
T ss_dssp CCCCEEEEECCCBTTTBEEETTEEESHHHHHHHHHHHH-HTCCEEEEECCHHHHHHHHHHTSSSEECSSCBCCH-HHH--
T ss_pred CCCEEEEEECCCCCCCEEEECCEEEEHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCH-HHH--
T ss_conf 58989999899878935856997788199999999998-09965999779899999997599668951455787-774--
Q ss_pred HHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 55304702301356685356786344641234553565555665442013578543200555876640354522100103
Q gi|254780342|r 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173 (309)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 173 (309)
..+. ....+......+++++. ..+.++.+| .++.++...+........... ... .++..
T Consensus 116 ----~~~~-~s~p~~~~~~~~~~~~~---~~~~~~~~l-------~~~~v~~~~g~~~~~~~~~~~---~~~---~~i~~ 174 (272)
T 2pvu_A 116 ----QSYD-FSDPYFEATQVILVKQG---SPVKNALDL-------KGKTIGVQNATTGQEAAEKLF---GKG---PHIKK 174 (272)
T ss_dssp ----TTEE-ECSCCEEECEEEEEETT---CCCCSGGGG-------TTSCEEEETTSHHHHHHHHHH---CSS---TTEEE
T ss_pred ----CCCC-CCCCCCCCCEEEEEECC---CCCCCHHHH-------CCCEEEEECCCCHHHHHHHHH---CCC---CEEEE
T ss_conf ----1055-67463056378997448---767885886-------798577625763999999873---448---73430
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCHH--HHC---CCCEEECCCC
Q ss_conf 665201899999996599369994124223--201---5851400786
Q gi|254780342|r 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPI--NSD---LNIHYLPGGE 216 (309)
Q Consensus 174 ~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~--~~~---~dl~~Ledp~ 216 (309)
.. ...+...++.+|+.+++....+... +.+ ..++.+.+|.
T Consensus 175 ~~---~~~~~~~~l~~GrvD~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (272)
T 2pvu_A 175 FE---TTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPK 219 (272)
T ss_dssp ES---SHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTT
T ss_pred CC---CHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 42---0899999998598116526659899999858998769951676
No 45
>3b50_A Sialic acid-binding periplasmic protein SIAP; periplasmic binding protein, trap, sugar transport, transport, transport protein; HET: SLB; 1.40A {Haemophilus influenzae} PDB: 2v4c_A* 2cey_A 2cex_A
Probab=95.59 E-value=0.12 Score=29.05 Aligned_cols=246 Identities=12% Similarity=0.126 Sum_probs=120.8
Q ss_pred CEEEEC--CCCCHHHHHHHHHHHHHHHCCCCEEEEEE------CCHHHHHHHHHCCCCEEEEEEE--------------C
Q ss_conf 379942--58869999999999999610698489985------6405788885149813999840--------------4
Q gi|254780342|r 27 PVRFAD--TGWTDIAATTAMTSVILEEILGYKTNIKL------LAVPVTFRSLKNKGIDIFMGYW--------------Y 84 (309)
Q Consensus 27 ~I~ig~--~~wte~~v~a~i~~~iLE~~lGy~Ve~~~------~~~~~~~~al~~G~iD~~~e~w--------------~ 84 (309)
++|++. .+-+..+...+..++.+|++.+..|++.. ++...+++++.+|.+|+..-.- .
T Consensus 4 ~lr~~~~~~~~~~~~~~~e~fa~~V~e~t~G~v~v~v~~~g~Lg~~~e~~~av~~G~vd~~~~~~~~~~~~~p~~~~~~l 83 (310)
T 3b50_A 4 DLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFAL 83 (310)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGGGGS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEECHHHHCCCCCHHHHCCC
T ss_conf 99997258999868899999999999976994999996698748879999999779957897533332445803442157
Q ss_pred CC-----------------CHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 64-----------------1356666553047023013566853567863446412345535655556654420135785
Q gi|254780342|r 85 PS-----------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP 147 (309)
Q Consensus 85 p~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~ 147 (309)
|. ....+.+..++..+..++....+.+.. . ....|.+.+||+ +..+-+.+
T Consensus 84 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~~~~-~-----~~~pi~s~~Dlk-------G~kiRv~~ 150 (310)
T 3b50_A 84 PYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQT-T-----SNRAINSIADMK-------GLKLRVPN 150 (310)
T ss_dssp TTTSCSHHHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEEE-E-----ESSCCCSGGGGT-------TCEEEECS
T ss_pred CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEEECCCCCCCC-C-----CCCCCCCHHHHC-------CCEEECCC
T ss_conf 6567987988888751188999999998756936876315762114-6-----798999968967-------88464368
Q ss_pred CCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEE-ECCCHHHHCCCC-EEECCCCCCCCCCHHH
Q ss_conf 43200555876640354522100103665201899999996599369994-124223201585-1400786546778658
Q gi|254780342|r 148 GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS-WEPHPINSDLNI-HYLPGGEEISGFGEAS 225 (309)
Q Consensus 148 ~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~-wsp~~~~~~~dl-~~Ledp~~~~~~p~~~ 225 (309)
.......++..|. ..+..+ +.+++.|+++|.++-... ++..-.+.-+++ .++-++...+ ..+
T Consensus 151 ----~~~~~~~~~~lGa-----~pv~~~----~~evy~aLq~G~vDg~~~~~~~~~~~~~~ev~~y~~~~~~~~--~~~- 214 (310)
T 3b50_A 151 ----AATNLAYAKYVGA-----SPTPMA----FSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHIL--NDQ- 214 (310)
T ss_dssp ----CHHHHHHHHHTTC-----EEEECC----GGGHHHHHHTTSSSEEEEEHHHHHHTTGGGSCSEEECCCCCE--EEE-
T ss_pred ----CCHHHHHHHHCCC-----EEEEEC----CCCHHHHHHCCCCCCCCCCCHHHHHCCCEEEEEEEECCCCCC--EEH-
T ss_conf ----6054679997397-----536735----641568987598653327610012033125546763277521--000-
Q ss_pred HHHHHCHHHHHHCH-HHHHHHHHC---------CCCHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 35442777787488-999998740---------899899999999998459998999-9999998599999875475456
Q gi|254780342|r 226 VYTVVRSDYLDKCP-NISRLLKNI---------KFSVALENEMMKLILNNKQDRQFV-GRTMLRTHPDLLKNWLIGVTTF 294 (309)
Q Consensus 226 ~~~vv~~~~~~~~P-~~~~~L~~~---------~ls~~~~~~l~~~v~~~g~~~~~v-A~~wL~~n~~~~~~Wl~~~~~~ 294 (309)
..++++++-+.-| +..++|... ....+...+....+...|....+. ..+|-+.=+..|++|++-+ -.
T Consensus 215 -~~~~n~~~w~~Lp~~~q~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~i~~~e~~~~~~~~~~~~~~~~~~~-g~ 292 (310)
T 3b50_A 215 -LYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFFEKQGVKITHPDLVPFKESMKPYYAEFVKQT-GQ 292 (310)
T ss_dssp -EEEEEHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCSHHHHHHTHHHHHHHHHHH-HH
T ss_pred -HEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHH-CH
T ss_conf -1013089886488999999999999999999999999889999999978599891348999997099999999986-76
Q ss_pred CCHHHHHHH
Q ss_conf 771379999
Q gi|254780342|r 295 DGQDPSRQL 303 (309)
Q Consensus 295 ~~~~~~~~~ 303 (309)
+|++..+++
T Consensus 293 ~g~~~~~~~ 301 (310)
T 3b50_A 293 KGESALKQI 301 (310)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 46
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens}
Probab=95.48 E-value=0.13 Score=28.79 Aligned_cols=188 Identities=11% Similarity=0.068 Sum_probs=99.5
Q ss_pred CCCCCCEEEECC-CC------CH-H---HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHH
Q ss_conf 345883799425-88------69-9---9999999999961069848998564057888851498139998404641356
Q gi|254780342|r 22 ADSCTPVRFADT-GW------TD-I---AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF 90 (309)
Q Consensus 22 ~~~~~~I~ig~~-~w------te-~---~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~ 90 (309)
....++|+||.- +| .+ + -+...++..+.+. +|++++++..+..-++.++.+|++|+......+. ..
T Consensus 7 ~~~~~~i~v~~~~~~pP~~~~~~~G~~~G~~~Dl~~~i~~~-~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~--~r 83 (234)
T 3h7m_A 7 RDRHRTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEV-MGMTVEFRLGAWSEMFSALKSGRVDVLQGISWSE--KR 83 (234)
T ss_dssp CCSSSCEEEEEETEETTTEEECTTSCEESHHHHHHHHHHHH-HTCCEEEEEECGGGHHHHHHTTSSSEEEEEECCH--HH
T ss_pred HHCCCCEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHCCCCCEEECCCCCH--HH
T ss_conf 45699199998999899079999998887699999999999-4996699517999999999779975542102444--33
Q ss_pred HHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf 66655304702301356685356786344641234553565555665442013578543200555876640354522100
Q gi|254780342|r 91 IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170 (309)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (309)
. ..+.... .+......++++.. ...+.++.+|. +..+|...+... ...+.....+.. ..
T Consensus 84 ~------~~~~fs~-p~~~~~~~~~~~~~--~~~~~~~~dl~-------~~~i~v~~g~~~----~~~l~~~~~~~~-~~ 142 (234)
T 3h7m_A 84 A------RQIDFTP-PHTIVYHAIFARRD--SPPAAGLEDLR-------GRKVALHRDGIM----HEYLAERGYGKD-LV 142 (234)
T ss_dssp H------TTEEEEE-EEEEEEEEEEEESS--SCCCSSGGGGT-------TSCEEEETTSHH----HHHHHTTTCGGG-EE
T ss_pred C------CCCCCCC-CCCCCCEEEEEEEC--CCCCCCHHHHC-------CCEEEEECCCHH----HHHHHHHCCCCC-EE
T ss_conf 1------4346577-64424549999840--33447867846-------982434379879----999997325771-58
Q ss_pred EECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH--HHCCC---CEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHH
Q ss_conf 103665201899999996599369994124223--20158---5140078654677865835442777787488999998
Q gi|254780342|r 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPI--NSDLN---IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245 (309)
Q Consensus 171 ~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~--~~~~d---l~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L 245 (309)
... + ..++..++.+|+.+++....+-.. +.+.. +..+..+ . ....+..++++ .+|+..+.|
T Consensus 143 ~~~-~----~~~~~~~l~~g~~D~~i~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~k----~~~~l~~~l 208 (234)
T 3h7m_A 143 LTP-T----PADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARS--I---AAQRYGYAVRQ----GDAELLARF 208 (234)
T ss_dssp EES-S----HHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEE--E---EEEEEEEEEET----TCHHHHHHH
T ss_pred EEE-H----HHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCC--C---CCCEEEEEEEC----CCHHHHHHH
T ss_conf 841-1----57689999769956999417889999986688754102567--7---77528999958----999999999
Q ss_pred HH
Q ss_conf 74
Q gi|254780342|r 246 KN 247 (309)
Q Consensus 246 ~~ 247 (309)
++
T Consensus 209 n~ 210 (234)
T 3h7m_A 209 SE 210 (234)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 47
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=95.45 E-value=0.14 Score=28.74 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=41.5
Q ss_pred CCCCEEEECCCCCHHH-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEE
Q ss_conf 5883799425886999-9999999999610698489985640578888514981399984
Q gi|254780342|r 24 SCTPVRFADTGWTDIA-ATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~-v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~ 82 (309)
..+.|+|....-+... ++.. +....|+++|++|+++.+++..+...+..+..|.....
T Consensus 3 a~~~l~i~~~~S~~~~gl~~~-l~~~Fek~tgi~V~~~~g~sg~l~~~i~~~~~~~~~~~ 61 (236)
T 3lr1_A 3 AEERLKMSTTTSTQDSGLLKV-LLPPFEKKNNVKVDVIAVGTGQALKLGEAGDVDVVFVH 61 (236)
T ss_dssp CSCEEEEEEEHHHHHHCHHHH-HHHHHHHHHTCEEEEEEECHHHHHHHHHTTSCSEEEEC
T ss_pred CCCEEEEEEECCCCCCHHHHH-HHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCEEEEC
T ss_conf 787699999768630113999-99999998498799998887999999976998706602
No 48
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=95.32 E-value=0.15 Score=28.47 Aligned_cols=238 Identities=9% Similarity=0.008 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHHHHHCCCCEEEEEEE--------------CC----CCH-------
Q ss_conf 999999999999610698489985----6405788885149813999840--------------46----413-------
Q gi|254780342|r 38 IAATTAMTSVILEEILGYKTNIKL----LAVPVTFRSLKNKGIDIFMGYW--------------YP----SLE------- 88 (309)
Q Consensus 38 ~~v~a~i~~~iLE~~lGy~Ve~~~----~~~~~~~~al~~G~iD~~~e~w--------------~p----~~~------- 88 (309)
....++..+..+|++.+-+|++-+ ++...+++++.+|.||+..-.- .| +..
T Consensus 15 ~~~~~~~fa~~v~e~t~G~v~i~~~g~Lg~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~v~~lP~~~~s~~~~~~~~~ 94 (316)
T 2vpn_A 15 QDVFAQAFKGYVEDNSDHTVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPYLMPTDMDTVLEFF 94 (316)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCEECCHHHHHHHHHCCCCCEEEECHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 89999999999998669879999899127779999999779838898766665102512566616225466999999853
Q ss_pred -------HHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -------5666655304702301356685356786344641234553565555665442013578543200555876640
Q gi|254780342|r 89 -------KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161 (309)
Q Consensus 89 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (309)
..+.+...+.++..++....+.. .+.. ...+.+++||+ +..+-+.+. ......++.
T Consensus 95 ~~~~~~~~~~~~~~~~~gv~~L~~~~~g~~-~~~t-----~~pi~s~~DLk-------G~kiR~~~~----~~~~~~~~~ 157 (316)
T 2vpn_A 95 DESKAINEMFPKLYAEHGLELLKMYPEGEM-VVTA-----DEPITSPEDFD-------NKKIRTMTN----PLLAETYKA 157 (316)
T ss_dssp HHCHHHHTHHHHHHHTTTEEEEEEEEEEEE-EEEE-----SSCCCSGGGGT-------TCEEEECSC----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEECCCCE-EEEC-----CCCCCCHHHHC-------CCEEEECCC----CHHHHHHHH
T ss_conf 005789999999998619677787147853-5536-----98889978976-------880762488----058999997
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH-HHCCCC-EEECCCCCCCCCCHHHHHHHHCHHHHHHCH
Q ss_conf 354522100103665201899999996599369994124223-201585-140078654677865835442777787488
Q gi|254780342|r 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI-NSDLNI-HYLPGGEEISGFGEASVYTVVRSDYLDKCP 239 (309)
Q Consensus 162 ~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~-~~~~dl-~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P 239 (309)
.|. ..++.+ +.+++.|+++|.++-.....+... +.-++. .++-++... +... ..+++++.-++-|
T Consensus 158 lGa-----~pv~~p----~~evy~aLq~G~iDg~~~~~~~~~~~~~~ev~~y~~~~~~~--~~~~--~~~~n~~~w~~L~ 224 (316)
T 2vpn_A 158 FGA-----TPTPLP----WGEVYGGLQTGIIDGQENPIFWIESGGLYEVSPNLTFTSHG--WFTT--AMMANQDFYEGLS 224 (316)
T ss_dssp HTC-----EEEECC----GGGHHHHHHHTSCSEEEEEHHHHHHTTGGGTCCEEEECCCC--EEEE--EEEEEHHHHHHSC
T ss_pred CCC-----CCCCCC----CCCCCHHHHCCCEEEEECCCCCCCCCCEEEEECCEECCCCC--CCHH--HHHHHHHHHHHCC
T ss_conf 598-----432453----00123065358610475252100122001110441314333--4336--8774399997399
Q ss_pred -HHHHHHHHC---------CCCHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf -999998740---------899899999999998459-------998999999999859999987547545677137999
Q gi|254780342|r 240 -NISRLLKNI---------KFSVALENEMMKLILNNK-------QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302 (309)
Q Consensus 240 -~~~~~L~~~---------~ls~~~~~~l~~~v~~~g-------~~~~~vA~~wL~~n~~~~~~Wl~~~~~~~~~~~~~~ 302 (309)
+..++|... ........+....+...| .++++ -++|.+.-+..|++|.+-.- .+|++..++
T Consensus 225 ~~~q~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~~~~e-~a~~~~~~~~~~~~~~~~~g-~~~~~~~d~ 302 (316)
T 2vpn_A 225 EEDQQLVQDAADAAYDHTIEHIKGLSEESLEKIKAASDEVTVTRLNDEQ-IQAFKERAPQVEEKFIEMTG-EQGQELLDQ 302 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCTTCEEEECCHHH-HHHHHTTHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH-HHHHHHHHHHHHHHHHHHCC-HHHHHHHHH
T ss_conf 9999999999999999999999999999999999769985999899999-99999999999999999729-899999999
Q ss_pred HHHHH
Q ss_conf 99874
Q gi|254780342|r 303 LERFM 307 (309)
Q Consensus 303 ~~~~~ 307 (309)
++..+
T Consensus 303 ~~a~~ 307 (316)
T 2vpn_A 303 FKADL 307 (316)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 49
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=95.09 E-value=0.18 Score=28.01 Aligned_cols=197 Identities=12% Similarity=0.073 Sum_probs=108.9
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEC
Q ss_conf 88379942588699999999999996106984899856405788885149813999840464135666655304702301
Q gi|254780342|r 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104 (309)
Q Consensus 25 ~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~ 104 (309)
..+|+||..++.....+..++.++.++.=+..+++..+++......+.+|++|+....-.+.. ....+..
T Consensus 91 ~~~l~I~~~~~~~~~~l~~~i~~~~~~~p~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~--------~~~~l~~-- 160 (305)
T 3fxq_A 91 EGHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHD--------IDTDLEA-- 160 (305)
T ss_dssp HTEEEEEECHHHHHTHHHHHHHHHHHHCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGG--------SCTTEEE--
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCC--------CCCCCEE--
T ss_conf 625999624630276789999999997899767657448177777875597348998405543--------5688437--
Q ss_pred CCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHH
Q ss_conf 35668535678634464123455356555566544201357854320055587664035452210010366520189999
Q gi|254780342|r 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184 (309)
Q Consensus 105 ~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~ 184 (309)
.........+++++.-+..+-.+++++... ..+...................++......+...+...+ .
T Consensus 161 ~~l~~~~~~~~~~~~hpl~~~~~l~~l~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~ 230 (305)
T 3fxq_A 161 QPLYVSDVVIVGQRQHPMANATRLAELQEC------RWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLAL----P 230 (305)
T ss_dssp EEEEECCEEEEEETTCTTTTCCSGGGGTTS------EEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTH----H
T ss_pred EECCCCCEEEEECCCCCCCCCCCHHHHHCC------EEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH----H
T ss_conf 871444179998688845689895675302------145523776531257789997198632233333679999----9
Q ss_pred HHHHCCCCEEEEEECCCHHHHC----CCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 9996599369994124223201----585140078654677865835442777787488999998740
Q gi|254780342|r 185 RDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 185 ~A~~~~~~~v~~~wsp~~~~~~----~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
..+++|..+.+ -|..+... .+++.++-+... +...+..+.+++. ...|.+..|++-+
T Consensus 231 ~~v~~g~gi~~---lp~~~~~~~~~~~~l~~~~l~~~~---~~~~~~l~~~~~~-~~~~~~~~fi~~i 291 (305)
T 3fxq_A 231 GVVAHSDLLTT---MPRTLYERNAFKDQLCSIPLQDAL---PNPTIYVLRRHDL-PVTPAAAGLIRWI 291 (305)
T ss_dssp HHHHTSSCEEE---EEHHHHHSSTTGGGEEECCCSSCC---CCCEEEEEEETTS-CCCHHHHHHHHHH
T ss_pred HHHHCCCEEEE---CCHHHHHHHHHCCCEEEEECCCCC---CCCEEEEEEECCC-CCCHHHHHHHHHH
T ss_conf 99974998998---119999855137998999688888---7768999998969-8899999999999
No 50
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.82 E-value=0.067 Score=30.74 Aligned_cols=192 Identities=10% Similarity=-0.067 Sum_probs=104.6
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
....+++||..++....++..++..+-++.=|..+++..+++..+.+.|..|++|+....- +..... +..
T Consensus 16 ~~~~~~rI~~~~~~~~~~lp~ll~~l~~~~P~v~i~l~~~~~~~~~~~L~~g~iDl~I~~~-~~~~~~---------l~~ 85 (241)
T 3oxn_A 16 QCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRP-TGPVEP---------LRS 85 (241)
T ss_dssp SCCCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECC-SSCCTT---------EEE
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECC-CCCCCC---------CCC
T ss_conf 0686899997379999999999999999886928999979879999999759854222026-787410---------113
Q ss_pred ECCCCCCCEEEEEEEHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHH
Q ss_conf 013566853567863446412-3455356555566544201357854320055587664035452210010366520189
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~~~-~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a 181 (309)
.........++++..-+.. .-.++.++.+. ..+...............+. .++ .....+...+- .
T Consensus 86 --~~l~~~~~v~v~~~~HPl~~~~~t~~dl~~~------~~v~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~s~----~ 151 (241)
T 3oxn_A 86 --EILGRVGVLCLLSKQHPLANQEMSLDDYLSH------PHAMIAISDGVKALIEQALI-DKP-QRKMVLRAYHL----E 151 (241)
T ss_dssp --EEEECCCEEEEEETTSGGGGSCCCHHHHHTS------EEEECSCCHHHHHHHHHHST-TSC-CCEEEEECSST----H
T ss_pred --CCCCCCCCEEECCCCCHHHHCCCCHHHHHHC------CEEEEECCCCCCHHHHHHHH-HCC-CCCCEEEECCH----H
T ss_conf --5432236402237665032025889999529------86999579986239999999-679-99855996789----9
Q ss_pred HHHHHHHCCCCEE-EEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHH
Q ss_conf 9999996599369-994124223201585140078654677865835442777787488999
Q gi|254780342|r 182 QIRRDQRNNIPAV-FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242 (309)
Q Consensus 182 ~l~~A~~~~~~~v-~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~ 242 (309)
.+...++.+..+. ++...........+++.++-|... |+..+. ++|..-....|...
T Consensus 152 ~~~~lv~~~~~i~ilP~~~~~~~~~~~~L~~~plp~~~---p~~~~~-l~Wh~~~~~~pa~~ 209 (241)
T 3oxn_A 152 AALAIVDTLPIIITVPADLAYLVAERYDLVVKPLPFQF---TPFDYS-MIWHARCEHSPAQE 209 (241)
T ss_dssp HHHHHC--CCCEEEEEHHHHHHHHHHTTEEEECCSSCC---CCCCEE-EEEEGGGTTCHHHH
T ss_pred HHHHHHHCCCEEEEHHHHHHHHHHHCCCEEEECCCCCC---CCEEEE-EEECCCCCCCHHHH
T ss_conf 99999975997998799999988653996998489998---976899-99799988998999
No 51
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1
Probab=94.65 E-value=0.23 Score=27.28 Aligned_cols=222 Identities=12% Similarity=0.020 Sum_probs=107.8
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCE-
Q ss_conf 58837994258869999999999999610--698489985640578888514981399984046413566665530470-
Q gi|254780342|r 24 SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSI- 100 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~v~a~i~~~iLE~~--lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~- 100 (309)
-+.+|+||.-+-+....+ +-.+.+.. .|++++...++-..+-+.+.+|+||+.+-.-. .+.. ...+..+
T Consensus 8 ~~~~i~ig~sp~~~d~~~---f~al~~g~~~~~~~~e~~~~d~~~LN~~l~~G~lDv~~iSs~----~y~~-~~~~y~lL 79 (280)
T 1zbm_A 8 HSHKIRVAHTPDADDAFM---FYAMTHGKVDTWLEIEHVIEDIETLNRKAFNAEYEVTAISAH----AYAL-LDDKYRIL 79 (280)
T ss_dssp TTCEEEEEECSSHHHHHH---HHHHHTTCSCCSCEEEEEECCHHHHHHHGGGTCCSEEEEEHH----HHTT-STTTEEEC
T ss_pred CCCEEEEEECCCCCHHHH---HHHHHCCCCCCCCCCEEEECCHHHHHHHHHCCCCCEEEHHHH----HHHH-CCCCEEEC
T ss_conf 564179997799963888---789983997899863586479999999998699999717199----9994-42406687
Q ss_pred EEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf 23013566853567863446412345535655556654420135785432005558766403545221001036652018
Q gi|254780342|r 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180 (309)
Q Consensus 101 ~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~ 180 (309)
...+....+. ...++.+ +..+ ++++.++.+............+.... ..++...
T Consensus 80 p~~s~~~~g~-~~~v~~~--------~~~~-------L~gk~ial~~~stTs~~Ll~ill~~~------~~~~~~~---- 133 (280)
T 1zbm_A 80 SAGASVGDGY-GPVVVAK--------SEIS-------LDGKRIAVPGRYTTANLLLKLAVEDF------EPVEMPF---- 133 (280)
T ss_dssp SSCCEEESSC-CCEEEES--------SCCC-------CTTCEEEESCTTSHHHHHHHHHCSSC------EEEECCG----
T ss_pred CCEEEEECCC-EEEEEEC--------CCCC-------CCCCEEEECCCCCHHHHHHHHHHHCC------CCCCCCH----
T ss_conf 8638840476-1489967--------7667-------78987985698719999999998516------7613686----
Q ss_pred HHHHHHHHCCCCEEEEEECCCHHHH-CCCCEEECCCC----CCCCCCHHHHHHHHCHHHHHHCH-HHHHHHHH-CCCCHH
Q ss_conf 9999999659936999412422320-15851400786----54677865835442777787488-99999874-089989
Q gi|254780342|r 181 SQIRRDQRNNIPAVFLSWEPHPINS-DLNIHYLPGGE----EISGFGEASVYTVVRSDYLDKCP-NISRLLKN-IKFSVA 253 (309)
Q Consensus 181 a~l~~A~~~~~~~v~~~wsp~~~~~-~~dl~~Ledp~----~~~~~p~~~~~~vv~~~~~~~~P-~~~~~L~~-~~ls~~ 253 (309)
.++..++..++.+.+..+.+..+.. ..++..+-|-. +..+-|-.....++|+++..+.+ ++.+.+.+ +++..+
T Consensus 134 ~~~~~al~~g~~Da~llIgd~al~~~~~~~~~v~DLge~W~~~tglP~vfa~~~vrr~~~~~~~~~~~~al~~s~~~~~~ 213 (280)
T 1zbm_A 134 DRIIQAVLDEEVDAGLLIHEGQITYADYGLKCVLDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAFAIE 213 (280)
T ss_dssp GGHHHHHHTTSSSEEEECSGGGGTGGGGTCEEEEEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHCCCCCCCEECCHHHHCCCCCCCCEEEEHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 53350544488870315575884400249908966266763577987165788750337999999999999999999997
Q ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHH
Q ss_conf 99999999984-599989999999998
Q gi|254780342|r 254 LENEMMKLILN-NKQDRQFVGRTMLRT 279 (309)
Q Consensus 254 ~~~~l~~~v~~-~g~~~~~vA~~wL~~ 279 (309)
...+....+.. ...-..++.++++..
T Consensus 214 ~~~e~~~~~~~~~~~l~~~~~~~y~~~ 240 (280)
T 1zbm_A 214 NPDEAIEYAMKYSRGLDRERAKRFAMM 240 (280)
T ss_dssp SHHHHHHHHGGGCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 989999999998139999999999999
No 52
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, periplasmic binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A
Probab=94.30 E-value=0.16 Score=28.36 Aligned_cols=228 Identities=9% Similarity=-0.047 Sum_probs=100.0
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH----CCCCEEEEEEECCCCHHHHHHHH
Q ss_conf 58345883799425886999999999999961069848998564057888851----49813999840464135666655
Q gi|254780342|r 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK----NKGIDIFMGYWYPSLEKFIAPYL 95 (309)
Q Consensus 20 ~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~----~G~iD~~~e~w~p~~~~~~~~~~ 95 (309)
..+++...|+|= .|.+..+.-+|++. .|+++|++|+++.+++..+...|. ++..|+........ +....
T Consensus 13 ~~~~~~~~l~v~--~~~~~~~~~~l~~~-Fek~tGIkV~~~~~~~~~~~~kl~a~~~~~~~Dvv~~~~~~~----~~~~~ 85 (334)
T 2pt1_A 13 DTPGEQQEINLY--SSRHYNTDNELYAK-FTAETGIKVNLIEGKADELLERIKSEGANSPADVLLTVDLAR----LWRAE 85 (334)
T ss_dssp -----CCEEEEE--ESCCCTTHHHHHHH-HHHHHCCEEEEEECCHHHHHHHHHHHGGGCCCCEEEEESHHH----HHHHH
T ss_pred CCCCCCCEEEEE--ECCCCCCHHHHHHH-HHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCCEEEECCHHH----HHHHH
T ss_conf 677768989999--79985525999999-999869879999798499999999648999985899555899----99998
Q ss_pred HCCCEEEE------------CCCCCCCEEE--------EEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 30470230------------1356685356--------786344641234553565555665442013578543200555
Q gi|254780342|r 96 EEGSIKLV------------AENLQGAKYM--------LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155 (309)
Q Consensus 96 ~~~~~~~~------------~~~~~~~~~~--------~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~ 155 (309)
..+.+... .....+...+ .+..........++|++|.+.+ +++++....+........
T Consensus 86 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~tw~dL~~~~--~kg~~~~~~~~~~~~~~~ 163 (334)
T 2pt1_A 86 EDGIFQPVQSEILETNVPEYLRSPDGMWFGFTKRARVIMYNKGKVKPEELSTYEELADPK--WKGRVIIRSSSNEYNQSL 163 (334)
T ss_dssp HTTCBCCCCCHHHHHHSCGGGBCTTSSCEEEEEEEEEEEEETTTCCGGGCCCSGGGGSGG--GTTCBCCCCTTSHHHHHH
T ss_pred HCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEEECCEEEEEECCCCCCCCCCCHHHHHCCH--HCCEEEECCCCCCHHHHH
T ss_conf 658510036444555444750889997887771217888632446789989999983916--459788527765259999
Q ss_pred HHHHHHC--------CCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCC-----------E--EECC
Q ss_conf 8766403--------54522100103665201899999996599369994124223201585-----------1--4007
Q gi|254780342|r 156 LDMINNN--------KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI-----------H--YLPG 214 (309)
Q Consensus 156 ~~~~~~~--------~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl-----------~--~Led 214 (309)
....... .+........ ............++.+|+..+...++.......... . ....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (334)
T 2pt1_A 164 VASLVVADGEESTLAWAKGFVSNFA-REPQGNDTAQIEAVSSGEADLTLANTYYMGRLLESEDPAQKAIAENVGVFFPNQ 242 (334)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTBS-SCCCSCHHHHHHHHHHTSCSEEEEEHHHHHHHHTCSCHHHHHHHHTEEEECCCT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCHHHHHHHHHCCCCCEEEECCCHHHEECCCCCCHHHHCCCCCCEECCCC
T ss_conf 9998762366204899998876326-245676188999987585334541011100000145402210234674331346
Q ss_pred C-CCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8-65467786583544277778748899999874089989999999999
Q gi|254780342|r 215 G-EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262 (309)
Q Consensus 215 p-~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~~v 262 (309)
| ++.+..+. .+ .+.+. .+|++++..|=++-+|.+.+..+....
T Consensus 243 ~~~G~~~~~~-~~--~i~k~--s~~~e~A~~fi~fl~s~e~Q~~~~~~~ 286 (334)
T 2pt1_A 243 EGRGTHVNVS-GV--GVVKT--APNREGAVKFIEFLVSEPAQAFLAQNN 286 (334)
T ss_dssp TTTCBCEEEE-EE--EEBTT--CTTHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred CCCCCEEEEE-EE--EEECC--CCCHHHHHHHHHHHCCHHHHHHHHHHC
T ss_conf 8886279999-99--99627--999899999999877999999999856
No 53
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=94.16 E-value=0.29 Score=26.59 Aligned_cols=205 Identities=10% Similarity=0.027 Sum_probs=113.8
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEE
Q ss_conf 34588379942588699999999999996106984899856405788885149813999840464135666655304702
Q gi|254780342|r 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIK 101 (309)
Q Consensus 22 ~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~ 101 (309)
.....+|+||.........+..+++.+.++.-+..+++..+++..+.+.|.+|++|+......... .....
T Consensus 89 ~~~~g~l~i~~~~~~~~~~l~~~l~~~~~~~P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~---------~~~~~ 159 (324)
T 1al3_A 89 WPDKGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHL---------YDDLV 159 (324)
T ss_dssp CCCEEEEEEEECHHHHHHTSHHHHHHHHHHCTEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCCT---------TSCEE
T ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCCC---------CCCEE
T ss_conf 456675067533687887899999999975898289999798799986674798258863067677---------66505
Q ss_pred EECCCCCCCEEEEEEEHHHHH--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCH
Q ss_conf 301356685356786344641--234553565555665442013578543200555876640354522100103665201
Q gi|254780342|r 102 LVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179 (309)
Q Consensus 102 ~~~~~~~~~~~~~~v~~~~~~--~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~ 179 (309)
. .........+++++.-+. ..-.++++|.+. ..+..+++..............+.... ..+...+
T Consensus 160 ~--~~l~~~~~~~~~~~~~~l~~~~~i~~~dL~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---- 226 (324)
T 1al3_A 160 M--LPCYHWNRSIVVTPEHPLATKGSVSIEELAQY------PLVTYTFGFTGRSELDTAFNRAGLTPR-IVFTATD---- 226 (324)
T ss_dssp E--EEEEEECEEEEECTTSTTTTTSCCCHHHHHTS------EEEEECTTSTTHHHHHHHHHHHTCCCE-EEEEESS----
T ss_pred E--EEEEEEEEEEEECCCCHHCCCCCCCHHHHHHC------CCEECCCCCCHHHHHHHHHHHCCCCCC-EEEEECC----
T ss_conf 8--98653005799746522103999999999628------772048998489999999997699875-6999999----
Q ss_pred HHHHHHHHHCCCCEEEEEECCCHHH---HCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC--CCCHHH
Q ss_conf 8999999965993699941242232---01585140078654677865835442777787488999998740--899899
Q gi|254780342|r 180 FSQIRRDQRNNIPAVFLSWEPHPIN---SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVAL 254 (309)
Q Consensus 180 ~a~l~~A~~~~~~~v~~~wsp~~~~---~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~--~ls~~~ 254 (309)
...+.+++..|..+.+. |.... ...+++.++.+... +...+..+.|++-. ..|.+.+|++.+ .++-+.
T Consensus 227 ~~~~~~~v~~g~gi~~l---p~~~~~~~~~~~lv~~~~~~~~---~~~~~~l~~r~~~~-~s~~~~~fi~~~~~~l~r~~ 299 (324)
T 1al3_A 227 ADVIKTYVRLGLGVGVI---ASMAVDPVSDPDLVKLDANGIF---SHSTTKIGFRRSTF-LRSYMYDFIQRFAPHLTRDV 299 (324)
T ss_dssp HHHHHHHHHHTSCEEEE---EGGGCCTTTCTTSEEEECBTTB---CCEEEEEEEETTCC-CCHHHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHCCEEEEC---HHHHHHHHHCCCEEEEECCCCC---CCCEEEEEEECCCC-CCHHHHHHHHHHHHHHCHHH
T ss_conf 99999999939979972---5989738748998999587888---65579999969685-69999999999998747998
Q ss_pred H
Q ss_conf 9
Q gi|254780342|r 255 E 255 (309)
Q Consensus 255 ~ 255 (309)
+
T Consensus 300 ~ 300 (324)
T 1al3_A 300 V 300 (324)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 54
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=94.15 E-value=0.12 Score=29.11 Aligned_cols=208 Identities=13% Similarity=0.094 Sum_probs=92.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCC-EEEEC--
Q ss_conf 799425886999999999999961069848998564057888851498139998404641356666553047-02301--
Q gi|254780342|r 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS-IKLVA-- 104 (309)
Q Consensus 28 I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~-~~~~~-- 104 (309)
|+|-...-.. .++.++.+.. |++.|++|++..+++..+...+..|- |+.... .. ........+.. .....
T Consensus 3 i~v~~~~~~~-~~~~~l~~~F-ek~tGi~V~~~~~~s~~l~~~i~~~a-Dv~~~~---~~-~~~~~~~~~~~~~~~~~~~ 75 (237)
T 2hxw_A 3 VNLYGPGGPH-TALKDIANKY-SEKTGVKVNVNFGPQATWFEKAKKDA-DILFGA---SD-QSALAIASDFGKDFNVSKI 75 (237)
T ss_dssp EEEEECSSTH-HHHHHHHHHH-HHHHCCCEEEEESSHHHHHHHHHHHC-SEEEES---SH-HHHHHHHTTSGGGCCGGGC
T ss_pred EEEEECCCCH-HHHHHHHHHH-HHHHCCEEEEEECCCHHHHHHHHCCC-CEEEEC---CC-HHHHHHHHHHCCCCCCCCE
T ss_conf 9999478978-9999999999-88019759999778299999976599-999984---60-4789998861046777727
Q ss_pred CCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC--------CCEEEECCCC
Q ss_conf 35668535678634464123455356555566544201357854320055587664035452--------2100103665
Q gi|254780342|r 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL--------KGFRLIEASE 176 (309)
Q Consensus 105 ~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~s~ 176 (309)
.....+...+++++.. ...+++|.||.+..-..........+... ............... .......+..
T Consensus 76 ~~~~~~~~vl~~~~~~-~~~~~~~~dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (237)
T 2hxw_A 76 KPLYFREAIILTQKGN-PLKIKGLKDLANKKVRIVVPEGAGKSNTS-GTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSG 153 (237)
T ss_dssp EEEEEEEEEEEESTTC-TTCCCSHHHHHHSCCCEEECCCTTSSCCT-TTTHHHHHHHTTCCHHHHHHHHHTEEEECCCCT
T ss_pred EEEEEEEEEEEEECCC-CCCCCCHHHHHHCCCEEEEECCCCCCCHH-HHHHHHHHHHHHCCHHHHHHHHCCCEEECCCHH
T ss_conf 9999432999997999-76765235664203106651368873222-799999986222208899974357058658889
Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHH-HHHHHHCCCCHHHH
Q ss_conf 20189999999659936999412422320158514007865467786583544277778748899-99987408998999
Q gi|254780342|r 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI-SRLLKNIKFSVALE 255 (309)
Q Consensus 177 ~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~-~~~L~~~~ls~~~~ 255 (309)
+...++.+|+.++...|..+..........+..+.... -.+.+. ++.. .+||+. .+|+ ++-+|.+-+
T Consensus 154 -----~~~~~v~~g~~d~~i~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~-i~~~---~~~~~~A~~Fi-~fl~S~e~q 221 (237)
T 2hxw_A 154 -----SARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLV--VYRTFN-VIAK---EGASKETQDFI-AYLSSKEAK 221 (237)
T ss_dssp -----TC--CTTTTTCSEEEEEHHHHHHSTTSSEEEECCTTTC--CEEEEE-EEEC---TTCCHHHHHHH-HHTTSHHHH
T ss_pred -----HHHHHHHHCCCEEEEEEHHHHHCCCCCEEEEECCCCCC--EEEEEE-EECC---CCCHHHHHHHH-HHHCCHHHH
T ss_conf -----99999970777099874454532666028996699852--587799-9958---99949999999-997899999
Q ss_pred H
Q ss_conf 9
Q gi|254780342|r 256 N 256 (309)
Q Consensus 256 ~ 256 (309)
.
T Consensus 222 ~ 222 (237)
T 2hxw_A 222 E 222 (237)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 55
>2q88_A EHUB, putative ABC transporter amino acid-binding protein; substrate-binding protein, compatible solues, osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=94.13 E-value=0.15 Score=28.43 Aligned_cols=156 Identities=13% Similarity=0.049 Sum_probs=82.3
Q ss_pred CCCCEEEECCCCC------H-H---HHHHHHHHHHHHHCCCCEEEEE-ECCHHHHHHHHHCCCCEEEEEEECCCCHHHHH
Q ss_conf 5883799425886------9-9---9999999999961069848998-56405788885149813999840464135666
Q gi|254780342|r 24 SCTPVRFADTGWT------D-I---AATTAMTSVILEEILGYKTNIK-LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92 (309)
Q Consensus 24 ~~~~I~ig~~~wt------e-~---~v~a~i~~~iLE~~lGy~Ve~~-~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~ 92 (309)
+.++||||..+|+ + + -+...+++.+.+ .+|++.+.. ..+-..++.+|.+|++|+.+.....+ ....
T Consensus 11 ~~g~lrV~~~~~pP~~~~~~~G~~~G~~~dl~~~ia~-~lg~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t-~~r~- 87 (257)
T 2q88_A 11 EQGFARIAIANEPPFTAVGADGKVSGAAPDVAREIFK-RLGVADVVASISEYGAMIPGLQAGRHDAITAGLFMK-PERC- 87 (257)
T ss_dssp HHTEEEEEECCCTTTCEECTTCCEESHHHHHHHHHHH-HTTCCEEEEEECCGGGHHHHHHTTSCSEECSCCBCC-HHHH-
T ss_pred CCCEEEEEECCCCCCEEECCCCCEEEHHHHHHHHHHH-HHCCCEEEEECCCHHHHHHHHHCCCCCEEEEEEECC-HHHC-
T ss_conf 2996999986899944799999888789999999999-939977998469999999999759988477643415-4324-
Q ss_pred HHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEE
Q ss_conf 65530470230135668535678634464123455356555566544201357854320055587664035452210010
Q gi|254780342|r 93 PYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172 (309)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (309)
........+......+++++.. ...+.++.++.+.. +..+|...+... .......++........
T Consensus 88 ------~~~~fs~p~~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~~i~~~~g~~~----~~~~~~~~~~~~~i~~~ 152 (257)
T 2q88_A 88 ------AAVAYSQPILCDAEAFALKKGN-PLGLKSYKDIADNP----DAKIGAPGGGTE----EKLALEAGVPRDRVIVV 152 (257)
T ss_dssp ------TTSEECSCCCEECEEEEEETTC-TTCCCBHHHHHHCT----TCCEEECTTSHH----HHHHHHTTCCGGGEEEC
T ss_pred ------CHHHCCCCEECCCCEEEEECCC-CCCCCCHHHHHHCC----CCEEEEECCCHH----HHHHHHCCCCCCCEEEE
T ss_conf ------3100586611267314675364-11333133454147----856998358569----99999818986622320
Q ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEECCCH
Q ss_conf 366520189999999659936999412422
Q gi|254780342|r 173 EASELASFSQIRRDQRNNIPAVFLSWEPHP 202 (309)
Q Consensus 173 ~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~ 202 (309)
. + ..++..++.+|+.+++....+..
T Consensus 153 ~-~----~~~~~~~l~~GrvD~~v~~~~~~ 177 (257)
T 2q88_A 153 P-D----GQSGLKMLQDGRIDVYSLPVLSI 177 (257)
T ss_dssp S-S----HHHHHHHHHHTSCSEEEEEHHHH
T ss_pred H-H----HHHHHHHHHCCCEEEEEECHHHH
T ss_conf 0-1----67888998769647999659999
No 56
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=93.80 E-value=0.16 Score=28.20 Aligned_cols=186 Identities=12% Similarity=0.131 Sum_probs=94.7
Q ss_pred CCCEEEECC-CCC------HH---HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 883799425-886------99---99999999999610698489985640578888514981399984046413566665
Q gi|254780342|r 25 CTPVRFADT-GWT------DI---AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY 94 (309)
Q Consensus 25 ~~~I~ig~~-~wt------e~---~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~ 94 (309)
.++|+||.. +|+ ++ -+..+++.++.++ +|++++++..+-..++++|.+|++|+.+..+..+ ....
T Consensus 2 ~k~l~v~~~~~~pP~~~~~~g~~~G~~~dl~~~ia~~-~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t-~~r~--- 76 (226)
T 1wdn_A 2 DKKLVVATDTAFVPFEFKQGDLYVGFDVDLWAAIAKE-LKLDYELKPMDFSGIIPALQTKNVDLALAGITIT-DERK--- 76 (226)
T ss_dssp --CEEEEEESSBTTTBEEETTEEESHHHHHHHHHHHH-HTCCEEEEEECGGGHHHHHHTTSSSEEEEEEECC-HHHH---
T ss_pred CCEEEEEECCCCCCEEEEECCEEEEHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCC-HHHC---
T ss_conf 9509999899978848811995888799999999999-6996699978999999998769986574421235-4132---
Q ss_pred HHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 53047023013566853567863446412345535655556654420135785432005558766403545221001036
Q gi|254780342|r 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174 (309)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (309)
..+. ....+......+++++. .+.+.+++||. ++.+|...+.... ..++... .........
T Consensus 77 ---~~~~-fs~p~~~~~~~~~~~~~--~~~~~~~~dl~-------g~~v~~~~g~~~~----~~l~~~~-~~~~~~~~~- 137 (226)
T 1wdn_A 77 ---KAID-FSDGYYKSGLLVMVKAN--NNDVKSVKDLD-------GKVVAVKSGTGSV----DYAKANI-KTKDLRQFP- 137 (226)
T ss_dssp ---TTSE-ECSCCEEEEEEEEEETT--CCSCSSSTTTT-------TCEEEEETTSHHH----HHHHHHC-CCSEEEEES-
T ss_pred ---CEEE-ECCCEEEEEEEEEEECC--CCCCCCHHHHC-------CCEEEEECCCCCC----CHHHHHC-CCCCEEEEC-
T ss_conf ---5488-24556997779999999--99999979958-------9999998786642----0123430-355236507-
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCHHH--HC---CCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHH
Q ss_conf 652018999999965993699941242232--01---58514007865467786583544277778748899999874
Q gi|254780342|r 175 SELASFSQIRRDQRNNIPAVFLSWEPHPIN--SD---LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247 (309)
Q Consensus 175 s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~--~~---~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~ 247 (309)
+ ..+...++.+|+.+++....+.+.. .. .++..+..+. .......++++ ++|++.+.|++
T Consensus 138 ~----~~~~~~~l~~g~vD~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~k----~~~~l~~~~n~ 202 (226)
T 1wdn_A 138 N----IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSL-----EAQQYGIAFPK----GSDELRDKVNG 202 (226)
T ss_dssp S----HHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEE-----EEEEEEEEECT----TCHHHHHHHHH
T ss_pred C----HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCC-----CCCCEEEEEEC----CCHHHHHHHHH
T ss_conf 7----899998874584689991618888887641567405515567-----77618999979----99999999999
No 57
>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=93.80 E-value=0.1 Score=29.48 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHHHHCC--------CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHH-
Q ss_conf 95799999999999863035--------834588379942588699999999999996106-98489985640578888-
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYAR--------DADSCTPVRFADTGWTDIAATTAMTSVILEEIL-GYKTNIKLLAVPVTFRS- 70 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~--------~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~l-Gy~Ve~~~~~~~~~~~a- 70 (309)
||+.+.+|+++++.+++.+. ......+++|=+ +++..+...|+.. .|++. |++|+++..++...++.
T Consensus 1 ~~~~l~l~l~~~~a~~ala~~~~~~~~~~~~~~~~l~v~s--~~~~~~~~~li~~-Fe~~~PgI~V~~~~~~~~~~~~kl 77 (355)
T 3c9h_A 1 MRICLFLCLCLCMASPALAQVAVFPALSGKTDAQTLVVYS--SLDEPLATPMIEG-FQKANPDIAVHYEDMLTGEIYDRI 77 (355)
T ss_dssp ---------------CEEEEEEEECCTTC----CEEEEEE--CSCHHHHHHHHHH-HHHHCTTCEEEEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE--CCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHHHH
T ss_conf 9079999999999999998886423435677799799997--9887899999999-998788938999968858999999
Q ss_pred ---HHCC--CCEEEEE
Q ss_conf ---5149--8139998
Q gi|254780342|r 71 ---LKNK--GIDIFMG 81 (309)
Q Consensus 71 ---l~~G--~iD~~~e 81 (309)
+.+| ..|+...
T Consensus 78 ~~~~~ag~~~~Dv~~~ 93 (355)
T 3c9h_A 78 VKETDAGKKTADFAFS 93 (355)
T ss_dssp HHHHHTTCCBCSEEEE
T ss_pred HHHHHCCCCCCCEEEE
T ss_conf 9875148986426761
No 58
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=92.91 E-value=0.42 Score=25.57 Aligned_cols=193 Identities=12% Similarity=0.058 Sum_probs=101.3
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECC
Q ss_conf 83799425886999999999999961069848998564057888851498139998404641356666553047023013
Q gi|254780342|r 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105 (309)
Q Consensus 26 ~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~ 105 (309)
++|+||.........+..++++..++.=+.++++...++..+.+.+.+|++|+....-.+........
T Consensus 5 G~lrIg~~~~~~~~~lp~~l~~f~~~~P~v~i~i~~~~~~~l~~~l~~~~~d~~~~~~~~~~~~~~~~------------ 72 (219)
T 1i6a_A 5 GPLHIGLIPTVGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDAVILALVKESEAFIEV------------ 72 (219)
T ss_dssp EEEEEEECTTTHHHHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEEECCGGGTTSEEE------------
T ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCC------------
T ss_conf 89999837779999999999999998889689999888488888875364010102355323453234------------
Q ss_pred CCCCCEEEEEEEHHHH--HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHH
Q ss_conf 5668535678634464--12345535655556654420135785432005558766403545221001036652018999
Q gi|254780342|r 106 NLQGAKYMLAVNDVGF--ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183 (309)
Q Consensus 106 ~~~~~~~~~~v~~~~~--~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l 183 (309)
........++++..-+ ...-.++.++... ..+..+.+..............+. .....-.......+
T Consensus 73 ~l~~~~~~~v~~~~hpla~~~~i~~~~l~~~------~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 141 (219)
T 1i6a_A 73 PLFDEPMLLAIYEDHPWANREAVPMADLAGE------KLLMLEDGHCLRDQAMGFCFEAGA-----DEDTHFRATSLETL 141 (219)
T ss_dssp EEEEEEEEEEEETTSGGGGCSCEEGGGGTTS------EEECCTTTTCSSCTTSSCSSCTTS-----EEECTTTTSCHHHH
T ss_pred CCCCCCEEEEEECCCHHHCCCCCCHHHHHCC------CEEEECCCCCHHHHHHHHHHHCCC-----CCCEEEEECCHHHH
T ss_conf 3445536999925971116999898998047------689845875315677789997389-----98704774899999
Q ss_pred HHHHHCCCCEEEEEECCCHH----HHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 99996599369994124223----201585140078654677865835442777787488999998740
Q gi|254780342|r 184 RRDQRNNIPAVFLSWEPHPI----NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 184 ~~A~~~~~~~v~~~wsp~~~----~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
.+.+++|..+.+ -|... ....+++.+..+... +...+..+.+++.. ..|.+..|++-+
T Consensus 142 ~~lv~~g~gi~~---lp~~~~~~~~~~~~l~~l~~~~~~---~~~~~~lv~~~~~~-~~~~~~~~~~~l 203 (219)
T 1i6a_A 142 RNMVAAGSGITL---LPALAVPPERKRDGVVYLPAIKPE---PRRTIGLVYRPGSP-LRSRYEQLAEAI 203 (219)
T ss_dssp HHHHHTTSCBEE---EEGGGSCSSSEETTEEEECEESSC---CEEEEEEEECTTCT-THHHHHHHHHHH
T ss_pred HHHHHHCCEEEE---ECHHHHHHHHHCCCEEEEECCCCC---CEEEEEEEEECCCC-CCHHHHHHHHHH
T ss_conf 999980998999---038999755107988999888998---53599999979196-789999999999
No 59
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=92.09 E-value=0.59 Score=24.58 Aligned_cols=199 Identities=7% Similarity=-0.019 Sum_probs=107.6
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
....+++||..+.....++..+++.+.++.=+.++++...++..+.+.|.+|++|+..-+-.+... ...
T Consensus 92 ~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~P~i~l~~~~~~~~~~~~~L~~~~~Di~i~~~~~~~~----------~~~- 160 (306)
T 3fzv_A 92 VIAGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDS----------TIE- 160 (306)
T ss_dssp CCCEEEEEEEEGGGHHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCCT----------TEE-
T ss_pred CCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCC----------CCE-
T ss_conf 777526888504789999899999998538974999997877999999985997368883578998----------725-
Q ss_pred ECCCCCCCEEEEEEEHHHH--HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf 0135668535678634464--12345535655556654420135785432005558766403545221001036652018
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGF--ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~--~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~ 180 (309)
.-..+......+++++.-+ .....++++|.++. .+..+ ....+.......+..++... ..+...+ .
T Consensus 161 ~~~l~~~~~~~v~~~~~~~l~~~~~~~~~dl~~~~------~i~~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~----~ 228 (306)
T 3fzv_A 161 TEPLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEP------MILLD-VQPSRTYFVSLFEELGLTPN-IAFSSPS----I 228 (306)
T ss_dssp EEESSCCBCCEEEEETTCTTTTSSEECHHHHTTSC------EEEEC-CTTHHHHHHHHHHHTTCCCC-EEEEESC----H
T ss_pred EEEECCCCEEEEEECCCHHHHCCCCCCHHHHHCCC------EEEEC-CCCCCCHHHHHHHHCCCCCC-CCCCCCC----H
T ss_conf 89921462689996264265337889999981799------89845-98765104556765387754-2546788----8
Q ss_pred HHHHHHHHCCCCEEEEEECC--CHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 99999996599369994124--223201585140078654677865835442777787488999998740
Q gi|254780342|r 181 SQIRRDQRNNIPAVFLSWEP--HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 181 a~l~~A~~~~~~~v~~~wsp--~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
..+..++..|..+.+..-.+ +.......++.++.+... +...+..+.+++ ....|.+..|++-+
T Consensus 229 ~~~~~~v~~g~gi~~lp~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~li~~~~-~~~~~~~~~fi~~l 294 (306)
T 3fzv_A 229 EMVRGMVGQGFGFSLLVTRPHSECTYDGKKVVMVDLAEPV---STSGLAAAWLKR-AQLTKPARLFVDYC 294 (306)
T ss_dssp HHHHHHHHTTSCBEEECCCCSCSBCTTSCBEEEEEESSCC---CBCCCEEEEETT-SCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEEHHHHHHHHHCCCCEEEEECCCCC---CCCEEEEEEECC-CCCCHHHHHHHHHH
T ss_conf 9999999809949994258788987569977998677887---642799999898-98999999999999
No 60
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=91.80 E-value=0.053 Score=31.39 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHH----HHHHHHHCCCC-EEEEE
Q ss_conf 9999999996106984899856405----78888514981-39998
Q gi|254780342|r 41 TTAMTSVILEEILGYKTNIKLLAVP----VTFRSLKNKGI-DIFMG 81 (309)
Q Consensus 41 ~a~i~~~iLE~~lGy~Ve~~~~~~~----~~~~al~~G~i-D~~~e 81 (309)
..+.+...+|+++|++|++...+.. -+-..+++|+. |++.-
T Consensus 56 ~~~~~~~~~e~~~gi~v~~~~~~~~~~~~kl~~~~asg~~PDi~~~ 101 (535)
T 3omb_A 56 ANMQWAKDLEADCDCKIEWQEVTREAWAQQKNATLASGDIADVNLN 101 (535)
T ss_dssp GGCHHHHHHHHHHTSEEEEEEEEHHHHHHHHHHHHHHTCCCSEEES
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9999999998664978999978926899999999978998869998
No 61
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=90.99 E-value=0.77 Score=23.85 Aligned_cols=238 Identities=9% Similarity=0.032 Sum_probs=115.8
Q ss_pred CCCCCCCEEEECCC--CCHHHHHHHHHHHHHHHCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEE------CCC
Q ss_conf 83458837994258--86999999999999961069848998--5----6405788885149813999840------464
Q gi|254780342|r 21 DADSCTPVRFADTG--WTDIAATTAMTSVILEEILGYKTNIK--L----LAVPVTFRSLKNKGIDIFMGYW------YPS 86 (309)
Q Consensus 21 ~~~~~~~I~ig~~~--wte~~v~a~i~~~iLE~~lGy~Ve~~--~----~~~~~~~~al~~G~iD~~~e~w------~p~ 86 (309)
..++.-++++++.- .+.......-.+..+++..|.++++. + ++...+++++..|.+|+..-.- .|.
T Consensus 4 ~~a~~~tlk~~~~~p~~~~~~~~~~~fa~~v~e~s~G~v~i~v~~~g~Lg~~~e~~~~v~~G~vd~~~~~~~~~~~~~p~ 83 (327)
T 2hpg_A 4 VFGAKYTLRFGHVLAPGEPYHQAFLKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGMYVKD 83 (327)
T ss_dssp CCCCSEEEEEECCCSTTSHHHHHHHHHHHHHHHHTTTSEEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTTTSGG
T ss_pred HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHH
T ss_conf 10187799997888998989999999999999876992999996687668879999999769970673243012125666
Q ss_pred CH---------------------------------HHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHH
Q ss_conf 13---------------------------------566665530470230135668535678634464123455356555
Q gi|254780342|r 87 LE---------------------------------KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133 (309)
Q Consensus 87 ~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~ 133 (309)
.. ..+.+..++.+++.++....+....+.. ...+.+.+||+
T Consensus 84 ~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~~-----~~pi~s~~Dlk- 157 (327)
T 2hpg_A 84 IGVMNLAYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRHFVT-----NKPIRKPEDLN- 157 (327)
T ss_dssp GGGGGSTTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEEE-----SSCCSSGGGGT-
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEC-----CCCCCCHHHHC-
T ss_conf 320234200466555888999999999864989999999998862984231212576056765-----88889979977-
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHC--CC-CE
Q ss_conf 5665442013578543200555876640354522100103665201899999996599369994124223201--58-51
Q gi|254780342|r 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD--LN-IH 210 (309)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~--~d-l~ 210 (309)
+..+-+.+ .......++..|. ..++.+ +.+++.|+++|..+-... ++.+.... ++ .+
T Consensus 158 ------G~kiR~~g----~~~~~~~~~~~Ga-----~pv~~~----~~ev~~aLqtG~iDg~~~-~~~~~~~~~~~e~~~ 217 (327)
T 2hpg_A 158 ------GLRIRTPG----APAWQESIRSLGA-----IPVAVN----FGEIYTAVQTRAVDGAEL-TYANVYNGGLYEVLK 217 (327)
T ss_dssp ------TCEEECCS----SHHHHHHHHHHTS-----EEECCC----GGGHHHHHHTTSCSEEEE-CHHHHHHTTGGGTCC
T ss_pred ------CCEEEECC----CHHHHHHHHHCCC-----CCCCCC----CCCHHHHHHCCCEEEEEE-CCCCCCCCCCEEEEC
T ss_conf ------98598448----7478999997388-----310467----641667987586458972-420001355000204
Q ss_pred EECCCCCCCCCCHHHHHHHHCHHHHHHCH-HHHHHHHHC------CCCHHHH----HHHHHHHHHCCC-----CHHHHHH
Q ss_conf 40078654677865835442777787488-999998740------8998999----999999984599-----9899999
Q gi|254780342|r 211 YLPGGEEISGFGEASVYTVVRSDYLDKCP-NISRLLKNI------KFSVALE----NEMMKLILNNKQ-----DRQFVGR 274 (309)
Q Consensus 211 ~Ledp~~~~~~p~~~~~~vv~~~~~~~~P-~~~~~L~~~------~ls~~~~----~~l~~~v~~~g~-----~~~~vA~ 274 (309)
+.-++...+ ... ..+++++.-+.-| +..++|... .+..+.. .+....+...|. ++++. +
T Consensus 218 ~~t~~~~~~--~~~--~~~~n~~~~~~L~~e~q~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~s~~e~-~ 292 (327)
T 2hpg_A 218 YMSETGHFL--LIN--FEIVSADWFNSLPKEYQKIIEEEMDKAGIEVSLKIMKELEEEYKQKCIEKGMAVIPASEIDK-E 292 (327)
T ss_dssp EEEEEEEEE--EEE--EEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCEEECGGGSCH-H
T ss_pred EEECCCCCC--CHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHH-H
T ss_conf 586289754--205--88714999974999999999999999999999999999999999999978799997999999-9
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999985999998754
Q gi|254780342|r 275 TMLRTHPDLLKNWLI 289 (309)
Q Consensus 275 ~wL~~n~~~~~~Wl~ 289 (309)
+|.+.-+..|++|..
T Consensus 293 ~~~~~~~~~~~~~~~ 307 (327)
T 2hpg_A 293 AFMEKAKQAYKNLGL 307 (327)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999955
No 62
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=90.99 E-value=0.77 Score=23.84 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=48.8
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCC-CCEEEEEEC----CHH----------------HHHHHHHCCCCEEEEEEE
Q ss_conf 88379942588699999999999996106-984899856----405----------------788885149813999840
Q gi|254780342|r 25 CTPVRFADTGWTDIAATTAMTSVILEEIL-GYKTNIKLL----AVP----------------VTFRSLKNKGIDIFMGYW 83 (309)
Q Consensus 25 ~~~I~ig~~~wte~~v~a~i~~~iLE~~l-Gy~Ve~~~~----~~~----------------~~~~al~~G~iD~~~e~w 83 (309)
-++|+||+-...=..+.++++...|+..+ ++++|++.. +.. -+-++|.+|+||+.+-.|
T Consensus 21 mk~IrIgTR~S~LAl~Qa~~v~~~L~~~~p~~~~ei~~i~T~GD~~~~~~L~~~ggkG~Ftkele~aLl~g~iDiAVHSl 100 (364)
T 3ecr_A 21 MRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSL 100 (364)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHCTTSEEEEEEC-------------------CCHHHHHHHHHTTSCSEEEEEG
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 74699995899999999999999999758998189999854662025861887488632299999999649988898725
Q ss_pred CC
Q ss_conf 46
Q gi|254780342|r 84 YP 85 (309)
Q Consensus 84 ~p 85 (309)
-.
T Consensus 101 KD 102 (364)
T 3ecr_A 101 KD 102 (364)
T ss_dssp GG
T ss_pred CC
T ss_conf 65
No 63
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, membrane, transport protein; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=90.77 E-value=0.8 Score=23.72 Aligned_cols=253 Identities=8% Similarity=0.057 Sum_probs=125.9
Q ss_pred CCCCCCEEEECCCCC--HHHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHHHHHCCCCEEEEEE---E---------
Q ss_conf 345883799425886--9999999999999610698489985----640578888514981399984---0---------
Q gi|254780342|r 22 ADSCTPVRFADTGWT--DIAATTAMTSVILEEILGYKTNIKL----LAVPVTFRSLKNKGIDIFMGY---W--------- 83 (309)
Q Consensus 22 ~~~~~~I~ig~~~wt--e~~v~a~i~~~iLE~~lGy~Ve~~~----~~~~~~~~al~~G~iD~~~e~---w--------- 83 (309)
...+.|.+++...-. -....+.-.++.+|++.+.+|++-+ ++..-+++++.+|.||+..-. +
T Consensus 11 ~~~~~t~~~a~~~~~~~~~~~~~~~fa~~Vee~t~G~I~i~p~g~Lg~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~i 90 (326)
T 3fxb_A 11 IEGRDTWRYAFEEAMTDVQGVYAQKFKEEIEANSDHEIQLFPYGTLGESADIMEQTQDGILQFVDQSPGFTGSLIPEAQV 90 (326)
T ss_dssp ----CCCEEECSSCTTSHHHHHHHHHHHHHHHSSSCCCEEECTTSSCSHHHHHHHHHHTSCSEEECCHHHHTTTSGGGGG
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCHHCCCCCHHHH
T ss_conf 16255799967899998789999999999997659879998798368879999999769852897514001224614665
Q ss_pred --CC----CCHH--------------HHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf --46----4135--------------666655304702301356685356786344641234553565555665442013
Q gi|254780342|r 84 --YP----SLEK--------------FIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143 (309)
Q Consensus 84 --~p----~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~ 143 (309)
+| +... .+.+...+.++..++....+.+. +.. ...|++++||+ +..+
T Consensus 91 ~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~g~~~-~~s-----~kpi~s~~Dlk-------G~ki 157 (326)
T 3fxb_A 91 FFVPYLLPTDQDHLARFFKESKAINDMFKPLYADQGLELLNMFPEGEVA-MTT-----KTPVTTCSDLD-------EVKF 157 (326)
T ss_dssp GGSTTCSCSCHHHHHHHHHHCHHHHTTSHHHHHTTTEEEEEEEEEEEEE-EEE-----SSCCSSGGGST-------TCEE
T ss_pred HCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCEE-EEC-----CCCCCCHHHHC-------CCCE
T ss_conf 3076457730999999851369999999999886197143221036246-646-----98999979976-------8712
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHC--CC-CEEECCCCCCCC
Q ss_conf 578543200555876640354522100103665201899999996599369994124223201--58-514007865467
Q gi|254780342|r 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD--LN-IHYLPGGEEISG 220 (309)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~--~d-l~~Ledp~~~~~ 220 (309)
-+.+ .......++..|. ..+..+ +.+++.|+++|.++-... ++.+.... ++ .++.-++...
T Consensus 158 R~~~----s~~~~~~~~~~Ga-----~pv~i~----~~Ev~~aLq~G~vDg~~~-~~~~~~~~~~~ev~~y~t~~~~~-- 221 (326)
T 3fxb_A 158 RVMT----NPLLVESYKAFGA-----TPTPLP----WGEVYGGLQTNVIQGQEN-PTFFLYSTKIYEVTDYITYAGHN-- 221 (326)
T ss_dssp EECS----CHHHHHHHHHHTS-----EEEECC----GGGHHHHHHTTSCCEEEE-EHHHHHHTTGGGSCSEEEECCCC--
T ss_pred ECCC----CCHHHHHHHHCCC-----CCCCCC----CCCHHHHHHCCCCCEEEC-CCHHHCCCCCCCCCCEEEECCCC--
T ss_conf 0048----6068999997599-----752565----100447986688661322-61221243432303458734642--
Q ss_pred CCHHHHHHHHCHHHHHHCH-HHHHHHHHCC-----CCH----HHH-HHHHHHHHHC-C-----CCHHHHHHHHHHHHHHH
Q ss_conf 7865835442777787488-9999987408-----998----999-9999999845-9-----99899999999985999
Q gi|254780342|r 221 FGEASVYTVVRSDYLDKCP-NISRLLKNIK-----FSV----ALE-NEMMKLILNN-K-----QDRQFVGRTMLRTHPDL 283 (309)
Q Consensus 221 ~p~~~~~~vv~~~~~~~~P-~~~~~L~~~~-----ls~----~~~-~~l~~~v~~~-g-----~~~~~vA~~wL~~n~~~ 283 (309)
++.+ ..++++++-+.-| +..++|.+.. ... +.. .++....+.+ | .++++. ++|.+.-...
T Consensus 222 ~~~~--~~~~n~~~w~~L~~e~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~e~-~~~~~~~~~v 298 (326)
T 3fxb_A 222 NFTT--AVMANKDFYDGLSAEDQQLVQNAALAAYDHTVVYQQQAADTELAKIMEAKPEMQVTVLTDEQR-SCFKEAAAEV 298 (326)
T ss_dssp EEEE--EEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCTTCEEEECCHHHH-HHHHHHHHHH
T ss_pred CCCE--EEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHH-HHHHHHHHHH
T ss_conf 3200--147628987408999999999999999999999999999999999998479988999999999-9999999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 998754754567713799999874
Q gi|254780342|r 284 LKNWLIGVTTFDGQDPSRQLERFM 307 (309)
Q Consensus 284 ~~~Wl~~~~~~~~~~~~~~~~~~~ 307 (309)
|++|..-+ ..+|++..++++..+
T Consensus 299 ~~~~~e~~-g~~g~~~~~~~~a~~ 321 (326)
T 3fxb_A 299 EAKFIEMT-GDSGAAILKQMKADL 321 (326)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CHHHHHHHHHHHHHH
T ss_conf 99999975-978999999999999
No 64
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=90.73 E-value=0.81 Score=23.69 Aligned_cols=195 Identities=11% Similarity=0.054 Sum_probs=99.9
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEC
Q ss_conf 88379942588699999999999996106984899856405788885149813999840464135666655304702301
Q gi|254780342|r 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104 (309)
Q Consensus 25 ~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~ 104 (309)
.++|+||.....+.+++..+++...++.=+.++++..+.+..+.++|.+|++|+..-. .|..... +...
T Consensus 10 ~G~l~ig~~~s~~~~~lp~~l~~f~~~~P~v~l~l~~~~~~~~~~~L~~g~iD~~i~~-~~~~~~~---------l~~~- 78 (232)
T 3ho7_A 10 TGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIA-SKAETEG---------LEDD- 78 (232)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEES-SCCCCTT---------EEEE-
T ss_pred EEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEE-CCCCCCC---------CEEE-
T ss_conf 2799999437789999999999999988896899998982899999977984289863-4765543---------0034-
Q ss_pred CCCCCCEEEEEEEHHHH--HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHH
Q ss_conf 35668535678634464--1234553565555665442013578543200555876640354522100103665201899
Q gi|254780342|r 105 ENLQGAKYMLAVNDVGF--ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182 (309)
Q Consensus 105 ~~~~~~~~~~~v~~~~~--~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~ 182 (309)
........++++..-+ .....++.++.+. ..+....+...+....+.....++......+...+ +..
T Consensus 79 -~l~~~~~~lv~~~~h~l~~~~~~~~~~l~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 147 (232)
T 3ho7_A 79 -LLYYEEFLGYVSRCEPLFEQDVIRTTEVNPH------RLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGS----MEA 147 (232)
T ss_dssp -EEEEEEEEEEECTTSGGGGSSSBCGGGCCGG------GBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCC----HHH
T ss_pred -EECCHHHHHHHCCCCCCCCCCCCCHHHHCCC------CEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC----HHH
T ss_conf -2000102221113454332222213331455------37982599742679999999759988765013588----899
Q ss_pred HHHHHHCCCCEEEEEECCCHHHHC----CCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 999996599369994124223201----585140078654677865835442777787488999998740
Q gi|254780342|r 183 IRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 183 l~~A~~~~~~~v~~~wsp~~~~~~----~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
+...+.+|..+.+ -|...... ..++.+.-+... +..++..+.+++. ...|.+..|++.+
T Consensus 148 ~~~lv~~g~Gia~---lP~~~~~~~~~~~~l~~~p~~~~~---~~~~i~lv~~~~~-~~~~~~~~fi~~l 210 (232)
T 3ho7_A 148 FMRLVESGQGITF---IPQLTVEQLSPSQKELVRPFGMPR---PVREVRLAVRQDY-SRRKLREQLIGLL 210 (232)
T ss_dssp HHHHHHTTCCEEE---EEGGGGGGSCHHHHTTEECBCSSE---EEEEEEEEEETTC-SCHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEE---ECHHHHHHHCCCCCEEEEECCCCC---CEEEEEEEEECCC-CCCHHHHHHHHHH
T ss_conf 9999993998998---309999855027988999889998---6559999998939-8899999999999
No 65
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural genomics, protein structure initiative; 1.97A {Coccidioides immitis RS}
Probab=89.25 E-value=0.38 Score=25.82 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=37.6
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHH-----CCCCEEEEEECCHHHHHHHHHCCCCEEEEEE
Q ss_conf 45883799425886999999999999961-----0698489985640578888514981399984
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEE-----ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~-----~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~ 82 (309)
....+|+|+.-.-+..-++..+.....|+ ..|++|++..+++...+.++.+|..|+....
T Consensus 17 ~~~~~l~i~~gs~~~~~l~~~la~aF~k~~~~~~~tgi~V~~~~~GSg~~i~~l~~G~~Di~~ss 81 (294)
T 3cvg_A 17 HSPVQLRIGNGGAGQSGLVKELADAFIKSKVDSGSAPFKVAWYKSDTTVTINYLKDGIVDVGITY 81 (294)
T ss_dssp --CEEEEEEESHHHHHTHHHHHHHHHHHHHHSCC---CEEEEEECCHHHHHHHHHTTSCSEEEES
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCEEEEC
T ss_conf 88779999347732688999999999975532368983899996882999999865898468631
No 66
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 1zlq_A* 3dp8_A* 3e3k_A* 1uiu_A 1uiv_A
Probab=89.21 E-value=1.1 Score=22.91 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=23.9
Q ss_pred EEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 4899856-40578888514981399984046413566665
Q gi|254780342|r 56 KTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY 94 (309)
Q Consensus 56 ~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~ 94 (309)
+|++... +....+.++.+|++|+....-...........
T Consensus 193 ~I~~~~~~~~~~~~~~l~~G~vd~~~~~~~~~~~~~~~~~ 232 (502)
T 2noo_A 193 KITFNVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARF 232 (502)
T ss_dssp EEEEEECCSHHHHHHHHHHSSCCEEEESTTTSCHHHHHHH
T ss_pred EEEEEEECCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
T ss_conf 4999985889999999867975588156666877777777
No 67
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme pcc 73102}
Probab=88.94 E-value=0.69 Score=24.13 Aligned_cols=151 Identities=10% Similarity=0.140 Sum_probs=79.5
Q ss_pred CCCEEEECCCCC------HH---HHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 883799425886------99---999999999996106984899856-40578888514981399984046413566665
Q gi|254780342|r 25 CTPVRFADTGWT------DI---AATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY 94 (309)
Q Consensus 25 ~~~I~ig~~~wt------e~---~v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~ 94 (309)
.+||+||+-+|+ .+ -+...++.++.+ ++|++++++.. +-.-++.+|.+|++|+.+... +........
T Consensus 2 ~~~l~v~~~~~PPf~~~~~g~~~G~~~di~~~i~~-~lg~~~~~v~~~~~~~~~~~l~~g~~Di~~~~~-~~t~~r~~~- 78 (228)
T 2pyy_A 2 QQPLLVATRVIPPFVLSNKGELSGFSIDLWRSIAT-QIGIESKLIEYSSVPELISAIKDNKVNLGIAAI-SITAEREQN- 78 (228)
T ss_dssp --CEEEEECCBTTTBBCC---CBSHHHHHHHHHHH-HHTCCEEEEECSSHHHHHHHHHTTSCSEECSSC-BCCHHHHHH-
T ss_pred CCCEEEEECCCCCEEECCCCEEEEEHHHHHHHHHH-HHCCCEEEEECCCHHHHHHHHHCCCCCEEEECC-CCCHHHHHH-
T ss_conf 96489996771981874499688859999999999-969973999679999999999859976671025-579889853-
Q ss_pred HHCCCEEEECCCCCCCEEEEEEEHHH-HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 53047023013566853567863446-41234553565555665442013578543200555876640354522100103
Q gi|254780342|r 95 LEEGSIKLVAENLQGAKYMLAVNDVG-FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173 (309)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 173 (309)
+....+.+.. ...+.+.... ....+.++.++. +..++...++.. ...+..+.. ++..
T Consensus 79 -----~~~s~p~~~~-~~~~i~~~~~~~~~~~~~~~~l~-------~~~i~~~~g~~~----~~~l~~~~~-----~~~~ 136 (228)
T 2pyy_A 79 -----FDFSLPIFAS-GLQIMVRNLESGTGDIRSIDDLP-------GKVVATTAGSTA----ATYLREHHI-----SVLE 136 (228)
T ss_dssp -----SEECSCSEEE-EEEEEEEC-----CCCCSGGGCT-------TCEEEEETTSHH----HHHHHHTTC-----EEEE
T ss_pred -----CCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHCC-------CCEEEECCCCHH----HHHHHHHHC-----CCHH
T ss_conf -----4467872125-61367631445653458878829-------988984389689----999987520-----2111
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCHH
Q ss_conf 665201899999996599369994124223
Q gi|254780342|r 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPI 203 (309)
Q Consensus 174 ~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~ 203 (309)
.. -..+...++.+|+.+++....+...
T Consensus 137 ~~---~~~~~~~~l~~gr~d~~i~~~~~~~ 163 (228)
T 2pyy_A 137 VP---KIEEAYKALQTKKADAVVFDAPVLL 163 (228)
T ss_dssp ES---SHHHHHHHHHTTSSSEEEEEHHHHH
T ss_pred HH---HHHHHHHHHHCCCEEEEEECHHHHH
T ss_conf 32---4888887864594679996318889
No 68
>2v84_A Spermidine/putrescine ABC transporter, periplasmic binding protein; polyamine binding, syphilis, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=88.83 E-value=1.1 Score=22.79 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=35.3
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCC--CEEEE
Q ss_conf 58345883799425886999999999999961069848998564-057888851498--13999
Q gi|254780342|r 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-VPVTFRSLKNKG--IDIFM 80 (309)
Q Consensus 20 ~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~-~~~~~~al~~G~--iD~~~ 80 (309)
...++.++++|. +|.+ ++--.|++. .|+++|++|++...+ ...++..|+.|. .|+..
T Consensus 19 ~~~~~~~~L~v~--~W~~-y~~~~~i~~-Fe~~~gIkV~~~~~~~~~~~~~kl~ag~~~~Dvv~ 78 (343)
T 2v84_A 19 RLQTRQDVLYLY--NWTY-YTPTSLIKK-FEQQYNVQVVYDDYASNEDMFAKLSIGASGYDLVV 78 (343)
T ss_dssp ------CEEEEE--EETT-TSCHHHHHH-HHHHHTCEEEEEEESCHHHHHHHHSSSCCSCSEEC
T ss_pred CCCCCCCEEEEE--ECCC-CCCHHHHHH-HHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEE
T ss_conf 533558989999--4777-479899999-99997988999958998999999982899999899
No 69
>2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP}
Probab=88.68 E-value=0.63 Score=24.40 Aligned_cols=195 Identities=10% Similarity=0.038 Sum_probs=98.2
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEC
Q ss_conf 88379942588699999999999996106984899856405788885149813999840464135666655304702301
Q gi|254780342|r 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104 (309)
Q Consensus 25 ~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~ 104 (309)
..+|+||...--....+..+++...++.=+.++++..+.+..+.++|.+|++|+..-+-.+..... ....
T Consensus 4 ~G~lrIg~~~~~~~~~l~~~l~~f~~~~P~v~l~i~~~~~~~l~~~l~~g~~Dl~i~~~~~~~~~~----------~~~~ 73 (209)
T 2ql3_A 4 AGPIAVGCYPALGPTILPSMLYAFTAEYPRASVEFREDTQNRLRTQLEGGELDVAIVYDLDLSPEW----------QTVP 73 (209)
T ss_dssp CEEEEEEECGGGTTTTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSCSEEEEESSSCCTTE----------EEEE
T ss_pred CEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCH----------HEEC
T ss_conf 289999968899999999999999998879389999898289998760798358853046542000----------0000
Q ss_pred CCCCCCEEEEEEEHHHH---HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHH
Q ss_conf 35668535678634464---123455356555566544201357854320055587664035452210010366520189
Q gi|254780342|r 105 ENLQGAKYMLAVNDVGF---ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181 (309)
Q Consensus 105 ~~~~~~~~~~~v~~~~~---~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a 181 (309)
... ....++++..-+ .....++++|.+. ..+..+.....+ ...+.....++... ......+ ..
T Consensus 74 -~~~-~~~~~v~~~~~~la~~~~~i~~~~l~~~------~~i~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~----~~ 139 (209)
T 2ql3_A 74 -LMT-REPMVVLGAEHPLAGVDGPVRLADLAEH------PMVLLDAPPSTN-HAMDVCREAGFAPR-VAYRTAN----FE 139 (209)
T ss_dssp -EEE-ECCEEEEETTCGGGGCCSCBCGGGGTTS------CEEEECCTTHHH-HHHHHHHHHTCCCC-EEEEESC----HH
T ss_pred -CCC-CCCCCCCCCCCHHHHCCCCCCHHHHHCC------CEEECCCCCHHH-HHHHHHHHCCCCCE-EEEEECC----HH
T ss_conf -121-1222224689834517996679988339------856328995188-99999997499950-6998263----77
Q ss_pred HHHHHHHCCCCEEEEEEC--CCHHHHCCCCEEE--CCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 999999659936999412--4223201585140--078654677865835442777787488999998740
Q gi|254780342|r 182 QIRRDQRNNIPAVFLSWE--PHPINSDLNIHYL--PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 182 ~l~~A~~~~~~~v~~~ws--p~~~~~~~dl~~L--edp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
.+.+.+++|..+.+.-=. .+......+++.+ .+|... ...+..+.++ -....|.+..|++-+
T Consensus 140 ~~~~lv~~g~Gi~~lp~~~~~~~~~~~~~~~~~pl~~~~~~----~~~i~l~~~~-~~~~s~~~~~Fi~~l 205 (209)
T 2ql3_A 140 TARAFVGRGLGWTLLLQRPRVDVTYEGLPVVVKPIAEPKPA----SVAVVVAWHQ-EATLSRVARAFIRFV 205 (209)
T ss_dssp HHHHHHHHTSCBEEESCCCSSCBCTTSCBEEEEEBCSSCCC----CEEEEEEEET-TCCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEEHHHHHHHHHCCCCEEEEECCCCCCC----EEEEEEEECC-CCCCCHHHHHHHHHH
T ss_conf 78999981995999026888778647997899977888874----4799999919-897799999999998
No 70
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} PDB: 1y4t_A
Probab=88.35 E-value=1.2 Score=22.54 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=33.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH----HCCCCEEEEEE
Q ss_conf 79942588699999999999996106984899856405788885----14981399984
Q gi|254780342|r 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL----KNKGIDIFMGY 82 (309)
Q Consensus 28 I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al----~~G~iD~~~e~ 82 (309)
|+| -+|.+.-+.-+|+..- |+++|++|++..+++..++..| .++..|+....
T Consensus 4 v~v--y~~~~~~~~~~l~~~F-ek~tGIkV~~~~~~s~~~~~kl~ae~~~~~~DVv~~~ 59 (322)
T 3e13_X 4 LNI--YSARHYNADFEIIKKF-EEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITA 59 (322)
T ss_dssp EEE--EECCCCTHHHHHHHHH-HHHHCCEEEEEECCHHHHHHHHHHHGGGCCCCEEEES
T ss_pred EEE--EECCCCCCHHHHHHHH-HHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 899--8798855269999999-9976988999989819999999964789996399958
No 71
>2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein; 2.40A {Mycobacterium smegmatis str}
Probab=88.35 E-value=1.2 Score=22.54 Aligned_cols=26 Identities=12% Similarity=-0.043 Sum_probs=13.6
Q ss_pred EEEEEEC-CHHHHHHHHHCCCCEEEEE
Q ss_conf 4899856-4057888851498139998
Q gi|254780342|r 56 KTNIKLL-AVPVTFRSLKNKGIDIFMG 81 (309)
Q Consensus 56 ~Ve~~~~-~~~~~~~al~~G~iD~~~e 81 (309)
++.+... +......+|.+|+||+...
T Consensus 249 ~I~~~~~~d~~~~~~al~~GevD~~~~ 275 (621)
T 2grv_A 249 LVLFRRGGAPAALADSIRNGDTQVAQV 275 (621)
T ss_dssp EEEEEECCSHHHHHHHHHHTSCCEEEE
T ss_pred CCEEEEECCCHHHHHHHHCCCCCHHHC
T ss_conf 310244024156788765266323222
No 72
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR structural genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli K12} PDB: 3hfu_A
Probab=88.11 E-value=0.77 Score=23.83 Aligned_cols=196 Identities=9% Similarity=0.006 Sum_probs=106.2
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
....+|+||....-....+..++.+..++.=+.++++..+.+..+.+.+.+|++|+..-...+..... ..
T Consensus 27 ~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~~l~~~l~~g~~D~~i~~~~~~~~~~----------~~ 96 (238)
T 2hxr_A 27 LTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPEL----------EA 96 (238)
T ss_dssp ----CEEEEECHHHHTTTHHHHHHHHHHHCTTSCEEEEECCHHHHHHHHHTTSCSEEEEESSCCCTTE----------EE
T ss_pred CCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCHHHHHCCCCCCCCH----------HH
T ss_conf 98428999953789999999999999998899889973288799999998698300120255443104----------33
Q ss_pred ECCCCCCCEEEEEEEHHH--HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf 013566853567863446--412345535655556654420135785432005558766403545221001036652018
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVG--FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~--~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~ 180 (309)
. ........+++++.- +.....++++|.+. ..+...++...+..........++.... .+...+ .
T Consensus 97 ~--~l~~~~~~~~~~~~hpla~~~~i~~~dL~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~ 163 (238)
T 2hxr_A 97 I--PLLTESLALVVAQHHPLAVHEQVALSRLHDE------KLVLLSAEFATREQIDHYCEKAGLHPQV-VIEANS----I 163 (238)
T ss_dssp E--EEEEEEEEEEEETTSGGGGCSEECGGGGGGC------EEEEECTTSHHHHHHHHHHHHTTCCCEE-EEEESC----H
T ss_pred H--HHHHHHHHHCCCCHHHHHHCCCCCHHHHHCC------CEEEECCCCCHHHHHHHHHHHCCCCCCE-EECCCC----H
T ss_conf 3--3455422321320046654035879998139------6898489985799999999976998752-123687----7
Q ss_pred HHHHHHHHCCCCEEEEEECCCHHHHCCC-CEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 9999999659936999412422320158-5140078654677865835442777787488999998740
Q gi|254780342|r 181 SQIRRDQRNNIPAVFLSWEPHPINSDLN-IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 181 a~l~~A~~~~~~~v~~~wsp~~~~~~~d-l~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
..+...+++|-.+. +-|.+.....+ ++.+...... +...+..+.+++ ....|.+..|++-+
T Consensus 164 ~~~~~~v~~g~gi~---~~p~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~-~~~s~~~~~fi~~~ 225 (238)
T 2hxr_A 164 SAVLELIRRTSLST---LLPAAIATQHDGLKAISLAPPL---LERTAVLLRRKN-SWQTAAAKAFLHMA 225 (238)
T ss_dssp HHHHHHHHHSSCBE---EEETHHHHHCTTEEEEEESSCS---CEEEEEEEEETT-SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEE---EEHHHHHHHCCCCEEEECCCCC---CEEEEEEEEECC-CCCCHHHHHHHHHH
T ss_conf 99999999399799---7029986037893399788998---624999999895-97899999999999
No 73
>3myu_A High affinity transport system protein P37; Mg289, CYPL, extracytoplasmic, thiamine binding protein, lipoprotein; HET: VIB; 1.95A {Mycoplasma genitalium}
Probab=87.89 E-value=0.87 Score=23.49 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=43.3
Q ss_pred CCCCCCCCEEEEC-CCCCHHHHHH---HHHHHHHHHCCCCEE--EEEE-CCHHHHHHHHHCCCCEEEEE
Q ss_conf 5834588379942-5886999999---999999961069848--9985-64057888851498139998
Q gi|254780342|r 20 RDADSCTPVRFAD-TGWTDIAATT---AMTSVILEEILGYKT--NIKL-LAVPVTFRSLKNKGIDIFMG 81 (309)
Q Consensus 20 ~~~~~~~~I~ig~-~~wte~~v~a---~i~~~iLE~~lGy~V--e~~~-~~~~~~~~al~~G~iD~~~e 81 (309)
|+..+..++++|. .++.+...+. +-+...|++++|.+| ++.. -+...+.++|++|++|+..=
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~Ls~~l~~~V~V~~~~~~Dy~~~ieal~~g~~Dia~~ 70 (344)
T 3myu_A 2 CATKSDNTLIFNISLDHNADTSIEKFFTVFSKKLSGKLNKKINVNFNIVDDSFTKINNIQANKADFAFV 70 (344)
T ss_dssp ------CEEEEEECCCTTGGGTHHHHHHHHHHHHHHHHTSCCEEEEEECCCHHHHHHHHHTTSCSEEEE
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCEEEE
T ss_conf 877888816999604888578899999999999999868965899996487999999997799568997
No 74
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=87.05 E-value=1.5 Score=22.04 Aligned_cols=153 Identities=15% Similarity=0.089 Sum_probs=85.7
Q ss_pred CCEEEECC-CCC------HH----HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 83799425-886------99----99999999999610698489985640578888514981399984046413566665
Q gi|254780342|r 26 TPVRFADT-GWT------DI----AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY 94 (309)
Q Consensus 26 ~~I~ig~~-~wt------e~----~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~ 94 (309)
+||+||.. +|+ +. -+...++.++.++ +|+++++........+.++.+|..|+.+...... .+...
T Consensus 4 ~tirv~~~~~~pP~~~~d~~g~~~G~~~Dl~~~ia~~-lg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~eR~~-- 79 (239)
T 1lst_A 4 QTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKR-MQVKCTWVASDFDALIPSLKAKKIDAIISSLSIT-DKRQQ-- 79 (239)
T ss_dssp SEEEEEECSCBTTTBEECTTCCEESHHHHHHHHHHHH-HTCEEEEEECCGGGHHHHHHTTSCSEECSSCBCC-HHHHH--
T ss_pred CEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHCCCCCEEEECCCCC-HHHHH--
T ss_conf 8699998999789258999998887099999999999-5996899980307678998668767899678799-78985--
Q ss_pred HHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 53047023013566853567863446412345535655556654420135785432005558766403545221001036
Q gi|254780342|r 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174 (309)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (309)
.......+......++++.. ...+.++.+|. ++.++.-.+............ ....+++..
T Consensus 80 -----~~~~s~p~~~~~~~~~~~~~--~~~~~~~~dL~-------~~~i~~~~g~~~~~~~~~~~~-----~~~~~~~~~ 140 (239)
T 1lst_A 80 -----EIAFSDKLYAADSRLIAAKG--SPIQPTLESLK-------GKHVGVLQGSTQEAYANDNWR-----TKGVDVVAY 140 (239)
T ss_dssp -----HCEECSCSBCCCEEEEEETT--CCCCSSHHHHT-------TCEEEEETTSHHHHHHHHHTG-----GGTCEEEEE
T ss_pred -----HCCCCCCEEECCCCCCCCCC--CCCCCCHHHHC-------CCEEEEECCCHHHHHHHHHHC-----CCEEEEEEE
T ss_conf -----20135745741431100158--87679978968-------998999857527766665413-----310235630
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 652018999999965993699941242232
Q gi|254780342|r 175 SELASFSQIRRDQRNNIPAVFLSWEPHPIN 204 (309)
Q Consensus 175 s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~ 204 (309)
+. ..+...++.+|+.+++..+.+....
T Consensus 141 ~~---~~~~~~~l~~g~vD~~i~~~~~~~~ 167 (239)
T 1lst_A 141 AN---QDLIYSDLTAGRLDAALQDEVAASE 167 (239)
T ss_dssp SS---HHHHHHHHHTTSCSEEEEEHHHHHH
T ss_pred CC---HHHHHHHHHCCCEEEEEECHHHHHH
T ss_conf 89---8999999984971399943899999
No 75
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=86.12 E-value=1.6 Score=21.73 Aligned_cols=195 Identities=10% Similarity=0.112 Sum_probs=109.3
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
....+++++........++..++..+.++.-+.++++...++..+.+.|.+|++|+...+..+... .+..
T Consensus 88 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~p~v~~~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~----------~l~~ 157 (294)
T 1ixc_A 88 GDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHP----------GIEI 157 (294)
T ss_dssp TCCEEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCCT----------TEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHCCCCCCCCCEEEEEECCCCCCC----------CCCC
T ss_conf 665237873253079999999999975318764443045203100321147964688851677787----------5422
Q ss_pred ECCCCCCCEEEEEEEHHHHHCC--CCCHHHHHHHHHHHHHCCCCCCCC--CCCCHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 0135668535678634464123--455356555566544201357854--320055587664035452210010366520
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGFALG--IKSYQDIAKYKKELGAKIYGIEPG--NEGNQRILDMINNNKFSLKGFRLIEASELA 178 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~~~~--i~~~~dl~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~ 178 (309)
. ........++++..-+... -.++.++..+. .+..+.+ ...........+..++... ......+
T Consensus 158 ~--~l~~~~~~~~~~~~h~~~~~~~i~~~dl~~~~------~i~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~--- 225 (294)
T 1ixc_A 158 V--NIAQEDLYLAVHRSQSGKFGKTCKLADLRAVE------LTLFPRGGRPSFADEVIGLFKHAGIEPR-IARVVED--- 225 (294)
T ss_dssp E--EEEEEEEEEEEEGGGGGGTCSEECGGGGTTCE------EEECCCSSSSCHHHHHHHHHHHTTCCCE-EEEECSS---
T ss_pred C--CCCCCEEEEEEECCCHHHCCCCCCHHHHHCCC------EEEECCCCCCCHHHHHHHHHHCCCCCCC-EEEEECC---
T ss_conf 2--01352079998273076539999999981899------7996387675146777776532454774-4688657---
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCHHHHC--CCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 1899999996599369994124223201--585140078654677865835442777787488999998740
Q gi|254780342|r 179 SFSQIRRDQRNNIPAVFLSWEPHPINSD--LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 179 ~~a~l~~A~~~~~~~v~~~wsp~~~~~~--~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
...+.+.+.+|..+.+ -|+..... -+++.++-+... +...+..+.+++ ..+|.+..|++-+
T Consensus 226 -~~~~~~lv~~g~gia~---lp~~~~~~~~~~~~~~~l~~~~---~~~~~~li~~~~--~~~p~~~~fi~~l 288 (294)
T 1ixc_A 226 -ATAALALTMAGAASSI---VPASVAAIRWPDIAFARIVGTR---VKVPISCIFRKE--KQPPILARFVEHV 288 (294)
T ss_dssp -HHHHHHHHHTTSCBEE---EEHHHHTSCCTTEEEEEECCTT---CEEEEEEEEESS--SCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCEEEE---CCHHHHHHHCCCEEEEECCCCC---CEEEEEEEEECC--CCCHHHHHHHHHH
T ss_conf -9999999994997998---1088985522985999778988---603899999799--9998999999999
No 76
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A*
Probab=86.04 E-value=0.84 Score=23.59 Aligned_cols=197 Identities=11% Similarity=0.009 Sum_probs=100.4
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
....+|+||........++..+++.+.+..-+.++++..+++..+.+.|.+|++|+...+..+....... .
T Consensus 87 ~~~~~l~i~~~~~~~~~~l~~~l~~~~~~~P~v~i~i~~~~~~~~~~~l~~~~~Di~i~~~~~~~~~~~~--------~- 157 (313)
T 2h98_A 87 TVSQTLRIGYVSSLLYGLLPEIIYLFRQQNPEIHIELIECGTKDQINALKQGKIDLGFGRLKITDPAIRR--------I- 157 (313)
T ss_dssp --CCEEEEEECGGGGGTTHHHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCTTEEE--------E-
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCEEEECCCCCCHHHH--------H-
T ss_conf 5662399986105678899999999986299334321127827899997421555135303566731345--------5-
Q ss_pred ECCCCCCCEEEEEEEHHHHHC----CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 013566853567863446412----3455356555566544201357854320055587664035452210010366520
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGFAL----GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~~~----~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~ 178 (309)
........++++...... .-.+..++.+..-. .....................+.... ..+...+
T Consensus 158 ---~l~~~~~~~~~~~~~~l~~~~~~~i~~~~l~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--- 226 (313)
T 2h98_A 158 ---MLHKEQLKLAIHKHHHLNQFAATGVHLSQIIDEPML----LYPVSQKPNFATFIQSLFTELGLVPS-KLTEIRE--- 226 (313)
T ss_dssp ---EEEEEEEEEEEETTSGGGGGTTSCBCGGGGTTSCEE----ECCCSSSSSHHHHHHHHHHHTTCCCS-CEEECSC---
T ss_pred ---HHHHHHHEEECCCCCHHHHCCCCCCCHHHHHCCCEE----EEECCCCCCCHHHHHHHHHHCCCCCC-EEECCCC---
T ss_conf ---433322034204776244335787588998089879----84145676410256677886389874-0013498---
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCHHHH--CCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 189999999659936999412422320--1585140078654677865835442777787488999998740
Q gi|254780342|r 179 SFSQIRRDQRNNIPAVFLSWEPHPINS--DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 179 ~~a~l~~A~~~~~~~v~~~wsp~~~~~--~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
...+.+.+++|..+.+ -|..... ..+++.++-+... +...+..+.++. ...|.+..|++-+
T Consensus 227 -~~~~~~~v~~g~gi~~---lP~~~~~~~~~~l~~~pl~~~~---~~~~i~l~~r~~--~~~~~~~~f~~~~ 289 (313)
T 2h98_A 227 -IQLALGLVAAGEGVCI---VPASAMDIGVKNLLYIPILDDD---AYSPISLAVRNM--DHSNYIPKILACV 289 (313)
T ss_dssp -HHHHHHHHHTTSCBEE---EEGGGGGSCCTTEEEEEBCSTT---CEEEEEEEEETT--CCCTHHHHHHHHH
T ss_pred -HHHHHHHHHHCCEEEE---EHHHHHHHHCCCEEEEECCCCC---CCEEEEEEEECC--CCCHHHHHHHHHH
T ss_conf -9999999994996997---1388984430998999878998---600799999899--8897999999999
No 77
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=85.46 E-value=0.49 Score=25.14 Aligned_cols=223 Identities=15% Similarity=0.134 Sum_probs=94.7
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHHHCC--CCEEEEEEECCCCHHHHHHHHHCCCE
Q ss_conf 58837994258869999999999999610698489985640-5788885149--81399984046413566665530470
Q gi|254780342|r 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNK--GIDIFMGYWYPSLEKFIAPYLEEGSI 100 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~-~~~~~al~~G--~iD~~~e~w~p~~~~~~~~~~~~~~~ 100 (309)
+.++++|- +|.+ ++--++++.- |+++|++|+.+..++ ..+++.|.+| ..|+..-. ...+......+.+
T Consensus 2 ~~~~L~v~--~W~~-~~~~~li~~F-ek~tGi~V~~~~~~~~~~~~~~l~ag~~~~Dv~~~~-----~~~~~~~~~~g~l 72 (344)
T 1a99_A 2 EQKTLHIY--NWSD-YIAPDTVANF-EKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPS-----ASFLERQLTAGVF 72 (344)
T ss_dssp -CCEEEEE--EETT-CSCTTHHHHH-HHHHCCEEEEEEESCHHHHHHHHHHCCCCCSEECCB-----HHHHHHHHHTTCB
T ss_pred CCCEEEEE--ECCC-CCCHHHHHHH-HHHHCCEEEEEECCCHHHHHHHHHCCCCCCCEEEEC-----HHHHHHHHHCCCC
T ss_conf 99889999--6877-4798899999-999799899995899999999998289999789988-----8999999974984
Q ss_pred EE----------------------------ECCCCCCCEEEEEEEHHHH-HC-----CCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 23----------------------------0135668535678634464-12-----34553565555665442013578
Q gi|254780342|r 101 KL----------------------------VAENLQGAKYMLAVNDVGF-AL-----GIKSYQDIAKYKKELGAKIYGIE 146 (309)
Q Consensus 101 ~~----------------------------~~~~~~~~~~~~~v~~~~~-~~-----~i~~~~dl~~~~~~~~~~~~g~~ 146 (309)
.. .+..+.....++++.+... .. ..++|.++.+.....+....+..
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~P~~~~~~~l~Ynk~~~~~~~~~~~p~~tw~~l~~~~~~~~~~~~~~~ 152 (344)
T 1a99_A 73 QPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVS 152 (344)
T ss_dssp CCCCGGGCGGGGGBCHHHHHHHHTTSGGGCSEEEEEEEEEEEEEEHHHHHHHHCTTCCTTSTHHHHSHHHHHHHGGGCEE
T ss_pred CCCCHHHHCCCHHCCHHHHHHCCCCCCCCEEEEEEEECCEEEEEEHHHHHHCCCCCCCHHHHHHHHCHHHHCCCCCCCCC
T ss_conf 51324332020006988874003334897799999945411677788764302887621577875195653013468866
Q ss_pred CCCCCCHHHHHHHHHCCCCCCC--------------EEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCC-----
Q ss_conf 5432005558766403545221--------------001036652018999999965993699941242232015-----
Q gi|254780342|r 147 PGNEGNQRILDMINNNKFSLKG--------------FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL----- 207 (309)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~----- 207 (309)
..........-.....|..... ..+..........+..+++.+|+..+...|+..+.....
T Consensus 153 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 232 (344)
T 1a99_A 153 FLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEA 232 (344)
T ss_dssp ECSCHHHHHHHHHHHTTSCTTCCCHHHHHTHHHHHHHHHGGGCCEECSSTHHHHHHTTSCSEEEEEHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 67878999999999659887776767888999999754403411136738778987699799997369999999987763
Q ss_pred ----CCEEECCCC-CCCCCCHHHHHHHHCHHHHHHCHH-HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf ----851400786-546778658354427777874889-9999874089989999999999
Q gi|254780342|r 208 ----NIHYLPGGE-EISGFGEASVYTVVRSDYLDKCPN-ISRLLKNIKFSVALENEMMKLI 262 (309)
Q Consensus 208 ----dl~~Ledp~-~~~~~p~~~~~~vv~~~~~~~~P~-~~~~L~~~~ls~~~~~~l~~~v 262 (309)
.+..+ .|+ +...+... .++.+. .+||+ +.+|++- -++.+.+..+....
T Consensus 233 ~~~~~~~~~-~p~~G~~~~~~~---~~I~k~--s~~~e~A~~fi~~-l~s~e~q~~~~~~~ 286 (344)
T 1a99_A 233 KNGVNVSFS-IPKEGAMAFFDV---FAMPAD--AKNKDEAYQFLNY-LLRPDVVAHISDHV 286 (344)
T ss_dssp TCSCCEEEE-CCTTCEEEEEEE---EECBTT--CSCHHHHHHHHHH-HHSHHHHHHHHHHH
T ss_pred CCCCCEEEE-CCCCCCEECCCC---CCEECC--CCCHHHHHHHHHH-HCCHHHHHHHHHHH
T ss_conf 049843463-388874340431---100189--9987999999999-65999999999974
No 78
>1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=85.07 E-value=1.8 Score=21.40 Aligned_cols=219 Identities=11% Similarity=0.002 Sum_probs=90.9
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC----CCCEEEEEEECCCCHHHHHHHHHCCCE
Q ss_conf 8837994258869999999999999610698489985640578888514----981399984046413566665530470
Q gi|254780342|r 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN----KGIDIFMGYWYPSLEKFIAPYLEEGSI 100 (309)
Q Consensus 25 ~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~----G~iD~~~e~w~p~~~~~~~~~~~~~~~ 100 (309)
.+.++|= ..+.+..+ -.|+.. .|+++|++|+++.+++..+.+-|.. ...|++.-.-.+ .+......+.+
T Consensus 4 ~~~lvVY-s~~~e~~~-~~l~~~-FeketGIkV~~~~~~~~~~~~ki~aeg~~~~~Dv~~~~~~~----~~~~~~~~gl~ 76 (312)
T 1xvx_A 4 DSGIVVY-NAQHENLV-KSWVDG-FTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFLTENSP----AMVLVDNAKLF 76 (312)
T ss_dssp CSCEEEE-ECSCHHHH-HHHHHH-HHHHHCCCEEEEECCHHHHHHHHHHHGGGCCCSEEEESSSH----HHHHHHHTTCB
T ss_pred CCEEEEE-ECCCHHHH-HHHHHH-HHHHHCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHH----HHHHHHHCCHH
T ss_conf 9849999-79887799-999999-88865988999989809999999963899996399988778----98887751524
Q ss_pred EE--------ECC----------CCCCCEEEEEEEHHH-HHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 23--------013----------566853567863446-4123-455356555566544201357854320055587664
Q gi|254780342|r 101 KL--------VAE----------NLQGAKYMLAVNDVG-FALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160 (309)
Q Consensus 101 ~~--------~~~----------~~~~~~~~~~v~~~~-~~~~-i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (309)
.. +.. .......++++.... ...+ -++|.+|.+..... +.....+.............
T Consensus 77 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~~~P~t~~dl~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 154 (312)
T 1xvx_A 77 APLDAVTQAQVAQEYRPEHGRWTGIAARSTVFVYNPEKISEAELPKSIMDLAKPEWKG--RWAASPSGADFQAIVSAMLE 154 (312)
T ss_dssp CCCCHHHHHHBCGGGSCSSSSCEEEEEEEEEEEECTTTSCGGGSCSSGGGGGSGGGTT--SEEECTTSHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHCCCCCEEEEEEEEEEEEEECHHHCCCCCCCCCHHHHHCCHHCC--CCCCCHHHHHHHHHHHHHHH
T ss_conf 5431100222236526679808999864699997100146566987899871402124--21012014568899887664
Q ss_pred HCCC--------CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCCCCH---HHH---
Q ss_conf 0354--------52210010366520189999999659936999412422320158514007865467786---583---
Q gi|254780342|r 161 NNKF--------SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE---ASV--- 226 (309)
Q Consensus 161 ~~~l--------~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~~p~---~~~--- 226 (309)
.++. .+.. .+...+. ......++..|+..+...|+..+.........-..+.....+++ ...
T Consensus 155 ~~g~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 230 (312)
T 1xvx_A 155 LKGEKATLEWLKAMKT-NFTAYKG---NSTVMKAVNAGQIDGGVIYHYYRFVDQAKTGENSGKTQLHYFKHQDPGAFVSI 230 (312)
T ss_dssp HHCHHHHHHHHHHHHH-HEEECSS---HHHHHHHHHTTSSSEEEEETHHHHHHHTTTCTTTTTCEEECCCTTCGGGCEEE
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEC---CCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEE
T ss_conf 1335679999986310-4414412---62666666479755313105479999887532134513775246888448872
Q ss_pred --HHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf --544277778748899999874089989999999
Q gi|254780342|r 227 --YTVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259 (309)
Q Consensus 227 --~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~ 259 (309)
.-|.+ -.+||+.+.-|=++-+|.+.+..+.
T Consensus 231 ~~~~I~k---~s~n~~~A~~Fi~fl~s~e~Q~~~~ 262 (312)
T 1xvx_A 231 SGGGVLA---SSKHPKEAQEFVKWITGKSGQDILR 262 (312)
T ss_dssp EEEEEBT---TCSSHHHHHHHHHHHHSHHHHHHHH
T ss_pred EEEEEEC---CCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 0699998---9999999999999975999999998
No 79
>2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; periplasmic binding protein, cellulose, thermophilic proteins; HET: CBI; 1.50A {Thermotoga maritima} PDB: 2o7j_A* 3i5o_A*
Probab=84.86 E-value=1.9 Score=21.34 Aligned_cols=27 Identities=11% Similarity=-0.029 Sum_probs=19.7
Q ss_pred EEEEEE-CCHHHHHHHHHCCCCEEEEEE
Q ss_conf 489985-640578888514981399984
Q gi|254780342|r 56 KTNIKL-LAVPVTFRSLKNKGIDIFMGY 82 (309)
Q Consensus 56 ~Ve~~~-~~~~~~~~al~~G~iD~~~e~ 82 (309)
.|++.. .+......++.+|+||+....
T Consensus 209 ~i~~~~~~d~~~~~~al~~GeiD~~~~~ 236 (592)
T 2o7i_A 209 YLAHVIYKDNPSASLAFERGDIDWNGLF 236 (592)
T ss_dssp EEEEECCSSHHHHHHHHHTTCCSEECCC
T ss_pred EEEEEEECCHHHHHHHHHCCCCCCCCCC
T ss_conf 0025773253899999975797622345
No 80
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet, sugar binding protein, signaling protein; HET: CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A*
Probab=84.54 E-value=1.9 Score=21.25 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=19.7
Q ss_pred EEEEEEC-CHHHHHHHHHCCCCEEEEEE
Q ss_conf 4899856-40578888514981399984
Q gi|254780342|r 56 KTNIKLL-AVPVTFRSLKNKGIDIFMGY 82 (309)
Q Consensus 56 ~Ve~~~~-~~~~~~~al~~G~iD~~~e~ 82 (309)
.+++... +......++.+|++|+....
T Consensus 194 ~i~~~~~~~~~~~~~a~~~g~~D~~~~~ 221 (529)
T 1zu0_A 194 CLRVPQIANNDQLLGKIVNSELDWTSSF 221 (529)
T ss_dssp EEEEECCCSHHHHHHHHHTTCCSEECCC
T ss_pred CCCCCCCCCHHHHHHHHHCCCEEEECCC
T ss_conf 2322223520567777753756441258
No 81
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcriptional regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=84.45 E-value=1.9 Score=21.33 Aligned_cols=216 Identities=14% Similarity=0.102 Sum_probs=112.6
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
....+++||........++..++..+.++.=+..+++..+.+..+.+.|.+|++|+......+.. ..+..
T Consensus 87 ~~~~~l~i~~~~~~~~~~l~~~l~~~~~~~p~v~l~~~~~~~~~l~~~l~~g~~Dlai~~~~~~~----------~~~~~ 156 (312)
T 2h9b_A 87 SVEKTIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISD----------PAIKH 156 (312)
T ss_dssp --CCEEEEEECGGGGGTTHHHHHHHHHHTCTTCEEEEEECCHHHHHHHHHTTSCSEEEESSCCCC----------TTEEE
T ss_pred CCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCC----------CCCEE
T ss_conf 35745999753566899999999999997899778531355077999997699647996068898----------76179
Q ss_pred ECCCCCCCEEEEEEEHHHHHC----CCCCHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 013566853567863446412----3455356555566544201357--8543200555876640354522100103665
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGFAL----GIKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASE 176 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~~~----~i~~~~dl~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~ 176 (309)
.........++++..-+.. ...+++++.+. ..+.. .+...............+.... ......+
T Consensus 157 --~~l~~~~~~~~~~~~~~l~~~~~~~~~~~dl~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s- 226 (312)
T 2h9b_A 157 --SLLRNERLMVAVHASHPLNQMKDKGVHLNDLIDE------KILLYPSSPKPNFSTHVMNIFSDHGLEPT-KINEVRE- 226 (312)
T ss_dssp --EEEEEEEEEEEEETTSGGGGGTTTCBCGGGSTTS------EEEECCCSSSSSHHHHHHHHHHTTTCCCS-EEEECSS-
T ss_pred --EEECCCEEEEEECCCCHHHHCCCCCCHHHHHCCC------CEEEECCCCCCCHHHHHHHHHHHCCCCCC-EEEECCC-
T ss_conf --9811305999963788466533432025564379------77984287665124666666665078861-4653167-
Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCHHHH--CCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHH
Q ss_conf 20189999999659936999412422320--1585140078654677865835442777787488999998740899899
Q gi|254780342|r 177 LASFSQIRRDQRNNIPAVFLSWEPHPINS--DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254 (309)
Q Consensus 177 ~~~~a~l~~A~~~~~~~v~~~wsp~~~~~--~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~ 254 (309)
...+...+++|..+.+ -|..... ..++++++-+... +...+..+.++. ...|.+..|++-+
T Consensus 227 ---~~~~~~~v~~g~gi~i---lP~~~~~~~~~~l~~~pl~~~~---~~~~~~l~~r~~--~~~~~~~~~~~~~------ 289 (312)
T 2h9b_A 227 ---VQLALGLVAAGEGISL---VPASTQSIQLFNLSYVPLLDPD---AITPIYIAVRNM--EESTYIYSLYETI------ 289 (312)
T ss_dssp ---HHHHHHHHHTTSCBEE---EEGGGGGBCCTTEEEEEBCSTT---CEEEEEEEEETT--CCCHHHHHHHHHH------
T ss_pred ---HHHHHHHHHCCCEEEE---ECHHHHHHHHCCEEEEECCCCC---CEEEEEEEEECC--CCCHHHHHHHHHH------
T ss_conf ---9999999983995999---2098874533887999857988---632899999799--9998999999999------
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999984599989999999998599
Q gi|254780342|r 255 ENEMMKLILNNKQDRQFVGRTMLRTHPD 282 (309)
Q Consensus 255 ~~~l~~~v~~~g~~~~~vA~~wL~~n~~ 282 (309)
.+..+. +.-...| .||+.|..
T Consensus 290 -~~~~a~-~~~~~~p-----~w~~~~~~ 310 (312)
T 2h9b_A 290 -RQIYAY-EGFTEPP-----NWLEHHHH 310 (312)
T ss_dssp -HHHHHH-HTCCCCC-----CC------
T ss_pred -HHHHHC-CCCCCCC-----CCCCCCCC
T ss_conf -999717-2789998-----84555566
No 82
>1vr5_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; TM1223, structural genomics; HET: EPE; 1.73A {Thermotoga maritima MSB8} SCOP: c.94.1.1
Probab=84.21 E-value=2 Score=21.16 Aligned_cols=26 Identities=15% Similarity=-0.079 Sum_probs=18.9
Q ss_pred EEEEEE-CCHHHHHHHHHCCCCEEEEE
Q ss_conf 489985-64057888851498139998
Q gi|254780342|r 56 KTNIKL-LAVPVTFRSLKNKGIDIFMG 81 (309)
Q Consensus 56 ~Ve~~~-~~~~~~~~al~~G~iD~~~e 81 (309)
+++... .+.....+++.+|++|+...
T Consensus 212 ~i~~~~~~~~~~~~~al~~G~vD~~~~ 238 (547)
T 1vr5_A 212 RIVELRVLSNNVAVGMLMKGELDWSNF 238 (547)
T ss_dssp EEEEECCSCHHHHHHHHHHTSCCEECS
T ss_pred EEEEEEECCCHHHHHHHHCCCCCEECC
T ss_conf 689987246067789986066524405
No 83
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp}
Probab=83.68 E-value=2.1 Score=21.02 Aligned_cols=200 Identities=10% Similarity=0.023 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEEH
Q ss_conf 99999999999610698489985640578888514981399984046413566665530470230135668535678634
Q gi|254780342|r 39 AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118 (309)
Q Consensus 39 ~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 118 (309)
-+..+++..+.+ .+|++++++..+...+++++.+|.+|+....+.++.. + ...+. .+..+......+.+..
T Consensus 28 G~~~dl~~~ia~-~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~---r----~~~~~-fs~py~~~~~~~~~~~ 98 (237)
T 3kzg_A 28 GFDIDLMQEICR-RLHATCTFEAYIFDDLFPALKNREVDLVIASMIITDE---R----KKHFI-FSLPYMESNSQYITTV 98 (237)
T ss_dssp SHHHHHHHHHHH-HTTCEEEEEEECGGGHHHHHHTTSSSEECSSCBCCTT---G----GGTCE-ECCCSBCCEEEEEEET
T ss_pred EEHHHHHHHHHH-HHCCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCHH---H----HHCCC-CCCCEEECCCEEEECC
T ss_conf 739999999999-9699759997799999999986998777213679978---9----73020-4674340340123315
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 46412345535655556654420135785432005558766403545221001036652018999999965993699941
Q gi|254780342|r 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198 (309)
Q Consensus 119 ~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~w 198 (309)
. ....++++|. ++.+|...+... ...+....... ....... ..+...++.+|+.+++...
T Consensus 99 ~---~~~~~~~~l~-------g~~i~~~~g~~~----~~~~~~~~~~~-~i~~~~~-----~~~~~~~l~~GrvD~~i~~ 158 (237)
T 3kzg_A 99 D---SKISTFDDLH-------GKKIGVRKGTPY----ARQVLSENRNN-QVIFYEL-----IQDMLLGLSNNQVDASLMD 158 (237)
T ss_dssp T---CSCCSGGGGT-------TCEEEEETTSTH----HHHHHHTCSSC-EEEEESS-----HHHHHHHHHTTSSSEEEEE
T ss_pred C---CCCCCHHHHC-------CCCCEEECCCHH----HHHHHHHCCCC-EEECCCC-----HHHHHHHHHCCCEEEEEEC
T ss_conf 5---5568988976-------982143258689----99998734564-0112588-----8998889865965799965
Q ss_pred CCCHH--HHCCCC--EEECCCCCCCC---CCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf 24223--201585--14007865467---786583544277778748899999874089989999999999845999899
Q gi|254780342|r 199 EPHPI--NSDLNI--HYLPGGEEISG---FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271 (309)
Q Consensus 199 sp~~~--~~~~dl--~~Ledp~~~~~---~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~~v~~~g~~~~~ 271 (309)
.+... +.+.+. ..+.++-..-. .........+++ ++|++.+.+++ -..++..+| ..++
T Consensus 159 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~in~----------~l~~l~~~G-~~~~ 223 (237)
T 3kzg_A 159 YEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANP----DQFVLIKKINK----------ILLEMEADG-TYLR 223 (237)
T ss_dssp HHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECG----GGHHHHHHHHH----------HHHHHHHSS-HHHH
T ss_pred HHHHHHHHHHCCCCCEECCCCEEECCCCCCCCCCEEEEECC----CCHHHHHHHHH----------HHHHHHHCC-HHHH
T ss_conf 99999999858964102153201136655567636999889----99999999999----------999999787-8999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999998599
Q gi|254780342|r 272 VGRTMLRTHPD 282 (309)
Q Consensus 272 vA~~wL~~n~~ 282 (309)
..++|+.-|..
T Consensus 224 i~~kyf~g~~~ 234 (237)
T 3kzg_A 224 LYSEYFEGHHH 234 (237)
T ss_dssp HHHHHC-----
T ss_pred HHHHCCCCCCC
T ss_conf 99746899877
No 84
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=83.50 E-value=2.1 Score=20.97 Aligned_cols=190 Identities=13% Similarity=0.080 Sum_probs=85.3
Q ss_pred HCCCCEEEEEE--CCHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHCCCEEEE-----CC--CCCCCEEEEEEEHHH
Q ss_conf 10698489985--6405788885149-81399984046413566665530470230-----13--566853567863446
Q gi|254780342|r 51 EILGYKTNIKL--LAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-----AE--NLQGAKYMLAVNDVG 120 (309)
Q Consensus 51 ~~lGy~Ve~~~--~~~~~~~~al~~G-~iD~~~e~w~p~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~v~~~~ 120 (309)
+.+|.+|++.. +++..+..++..| ..|++.....+ ........+.+... .. ........+.++...
T Consensus 30 ~~TG~~V~v~~~~ggSg~~~~~i~~g~~aDV~~~a~~~----~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 105 (310)
T 1sbp_A 30 QETGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAY----DVNAIAERGRIDKNWIKRLPDDSAPYTSTIVFLVRKGN 105 (310)
T ss_dssp HHHSCEEEEEEEESCHHHHHHHHHTTCCCSEEEESSHH----HHHHHHHTTSSCTTGGGGSHHHHCSEEBCEEEEEETTC
T ss_pred HCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCHH----HHHHHHHCCCCCCHHHHHCCCCCEEEEEEEEEEEECCC
T ss_conf 61499779996478619999999749998989857778----89999977998720334303574036612589970798
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCHH-----HHHHHHHCCCC----------C-CCEEEECCCCCCHHHHH
Q ss_conf 41234553565555665442013578543-20055-----58766403545----------2-21001036652018999
Q gi|254780342|r 121 FALGIKSYQDIAKYKKELGAKIYGIEPGN-EGNQR-----ILDMINNNKFS----------L-KGFRLIEASELASFSQI 183 (309)
Q Consensus 121 ~~~~i~~~~dl~~~~~~~~~~~~g~~~~~-~~~~~-----~~~~~~~~~l~----------~-~~~~~~~~s~~~~~a~l 183 (309)
. ..+++|.||.+..-. +..+.+.. +.... ........+.. + ........+. ....
T Consensus 106 ~-~~~~~w~DL~~~~~k----~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~---~~~~ 177 (310)
T 1sbp_A 106 P-KQIHDWNDLIKPGVS----VITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAEDFVKALFKNVEVLDSGA---RGST 177 (310)
T ss_dssp T-TCCCSGGGGGSTTCC----EECCCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTEEECCSSH---HHHH
T ss_pred C-CCCCCHHHHHCCCCC----EEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECCCC---HHHH
T ss_conf 5-566657876122324----2541677664116999999998864037758999999998631573303576---6899
Q ss_pred HHHHHCCCCEEEEEECCCHHHHCC-----CCEEECCCC-CCCCCCHHHHHHHHCHHH--HHHCHHHHHHHHHCCCCHHHH
Q ss_conf 999965993699941242232015-----851400786-546778658354427777--874889999987408998999
Q gi|254780342|r 184 RRDQRNNIPAVFLSWEPHPINSDL-----NIHYLPGGE-EISGFGEASVYTVVRSDY--LDKCPNISRLLKNIKFSVALE 255 (309)
Q Consensus 184 ~~A~~~~~~~v~~~wsp~~~~~~~-----dl~~Ledp~-~~~~~p~~~~~~vv~~~~--~~~~P~~~~~L~~~~ls~~~~ 255 (309)
..++.+|+..+...|..+...... .+..+ -|. +....++. + ..... -..||++++.|=.+=+|.+-+
T Consensus 178 ~~~v~~Ge~~~~i~~~~~~~~~~~~~~~~~~~~v-~P~~g~~~~~~~-~---~~~~~~k~~~n~e~A~~FidfLlS~egQ 252 (310)
T 1sbp_A 178 NTFVERGIGDVLIAWENEALLATNELGKDKFEIV-TPSESILAEPTV-S---VVDKVVEKKDTKAVAEAYLKYLYSPEGQ 252 (310)
T ss_dssp HHHHTSCCCSEEEEEHHHHHHHHHTTTTTTEEEE-CCSEEECBCCEE-E---ECHHHHHHHTCHHHHHHHHHGGGSHHHH
T ss_pred HHHHHCCCCCEEEEECCHHHHHHHHCCCCCEEEE-CCCCCCCCCCCE-E---EEEHHHCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 9999759871798851189998863268855997-688877667876-9---9871314799999999999996199999
Q ss_pred HH
Q ss_conf 99
Q gi|254780342|r 256 NE 257 (309)
Q Consensus 256 ~~ 257 (309)
.-
T Consensus 253 ~i 254 (310)
T 1sbp_A 253 EI 254 (310)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 85
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=82.62 E-value=2.3 Score=20.75 Aligned_cols=59 Identities=14% Similarity=-0.055 Sum_probs=47.0
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCC-CCEEEEEEC----CHH----------------HHHHHHHCCCCEEEEEEE
Q ss_conf 88379942588699999999999996106-984899856----405----------------788885149813999840
Q gi|254780342|r 25 CTPVRFADTGWTDIAATTAMTSVILEEIL-GYKTNIKLL----AVP----------------VTFRSLKNKGIDIFMGYW 83 (309)
Q Consensus 25 ~~~I~ig~~~wte~~v~a~i~~~iLE~~l-Gy~Ve~~~~----~~~----------------~~~~al~~G~iD~~~e~w 83 (309)
.++|+||+-+..=..++++++...|+... |+++|++.. +.. -+-++|.+|+||+.+..+
T Consensus 3 ~~~IrIgtR~S~LAl~Qa~~v~~~L~~~~p~~~~ei~~i~T~GD~~~~~~l~~~ggkg~F~kele~aLl~g~iDiAVHSl 82 (313)
T 1gtk_A 3 DNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSM 82 (313)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHHCTTCEEEEEECC-----------------CTTHHHHHHHHHTTSCSEEEEEG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHCCCCEEEHHHHHHHHHCCCCCEEEEEC
T ss_conf 88669995884999999999999999758997299999963484346874777288630179999998638764897513
No 86
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=81.70 E-value=2.5 Score=20.53 Aligned_cols=231 Identities=11% Similarity=0.107 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHCCCCE--EEEEE----CCHHHHHHHHHCCCCEEEEEEEC--CC----------------C---------
Q ss_conf 9999999996106984--89985----64057888851498139998404--64----------------1---------
Q gi|254780342|r 41 TTAMTSVILEEILGYK--TNIKL----LAVPVTFRSLKNKGIDIFMGYWY--PS----------------L--------- 87 (309)
Q Consensus 41 ~a~i~~~iLE~~lGy~--Ve~~~----~~~~~~~~al~~G~iD~~~e~w~--p~----------------~--------- 87 (309)
...-.++.+|+..|.. +++-+ ++...+++++.+|.||+..-.-. +. .
T Consensus 18 ~~~~fa~~V~e~t~G~v~i~i~~~g~L~~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf~~~~~~~~~~~~~~ 97 (301)
T 2pfz_A 18 NLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFLATGYDASFKLYQA 97 (301)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGSTTSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 99999999998759919999966986788699999997698771000224645417540366357676876889998630
Q ss_pred -HHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf -3566665530470230135668535678634464123455356555566544201357854320055587664035452
Q gi|254780342|r 88 -EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166 (309)
Q Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 166 (309)
...+.+...+..+..++....+... ++. ...+.+++||+ +..+-+.+. .....++..|.
T Consensus 98 ~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~-----~~pi~~~~Dlk-------G~kiR~~~~-----~~~~~~~~~Ga-- 157 (301)
T 2pfz_A 98 QKPFLEKKLASQGMMLLYSVAWPPQG-IFA-----NRDIKQVSDMK-------GLKWRAYSP-----VTAKIAELVGA-- 157 (301)
T ss_dssp HHHHHHHHHHTTTEEEEEEEECCCCE-EEE-----SSCCSSGGGGT-------TCEEEESSH-----HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHCCEEEEEECCCCCEE-EEC-----CCCCCCHHHHC-------CCEEEECCH-----HHHHHHHHCCC--
T ss_conf 48999987642325798752776222-242-----88999958867-------985871682-----49999998188--
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHC--C-CCEEECCCCCCCCCCHHHHHHHHCHHHHHHCH-HHH
Q ss_conf 2100103665201899999996599369994124223201--5-85140078654677865835442777787488-999
Q gi|254780342|r 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD--L-NIHYLPGGEEISGFGEASVYTVVRSDYLDKCP-NIS 242 (309)
Q Consensus 167 ~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~--~-dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P-~~~ 242 (309)
..+..+ ..+++.|+++|.++-... ++...... + ..++.-+.... +... ..++|++.-+.-| +..
T Consensus 158 ---~pv~~~----~~ev~~aLq~G~vDg~~~-~~~~~~~~~~~e~~~~~~~~~~~--~~~~--~~~~n~~~~~~L~~~~q 225 (301)
T 2pfz_A 158 ---QPVTVQ----QAELAQAMATGVIDSYMS-SGSTGFDTKTYEYIKKFYDTEAW--LPKN--AVLVNKKAFDALDPATQ 225 (301)
T ss_dssp ---EEEECC----GGGHHHHHHTTSCSEEEE-CHHHHHHTTGGGTCCEEECCCCC--CCEE--EEEEEHHHHHTSCHHHH
T ss_pred ---CCCCCC----CHHHHHHHHHCCCHHHCC-CHHHHHHCCCCEEEEEEEECCCC--CCHH--HHHCCHHHHHHCCHHHH
T ss_conf ---744565----406899998253102005-70444311561442048735874--6414--43506999963999999
Q ss_pred HHHHHC---------CCCHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 998740---------8998999999999984599-----98999999999859999987547545677137999998744
Q gi|254780342|r 243 RLLKNI---------KFSVALENEMMKLILNNKQ-----DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308 (309)
Q Consensus 243 ~~L~~~---------~ls~~~~~~l~~~v~~~g~-----~~~~vA~~wL~~n~~~~~~Wl~~~~~~~~~~~~~~~~~~~~ 308 (309)
++|... ..-.+...+....+...|. ++++ -+.|.+.-...|++|.+.+ |.+..+.+..+.+
T Consensus 226 ~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~~~~~~-~~~~~~a~~~~~~~~~~~~----g~~g~~~~d~~~k 300 (301)
T 2pfz_A 226 QALKKAGAQAEERGWKLSQEKNSWYKEQLAKNGMAIIAPTAEL-KSGLTEVGKRMLDDWLKKA----GADGQAMIDAYRK 300 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCHHH-HHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHH-HHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHC
T ss_conf 9999999999999999999998999999997889999899999-9999999999999999984----9699999999966
No 87
>1ii5_A Hypothetical protein SLR1257; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=81.63 E-value=2.5 Score=20.52 Aligned_cols=153 Identities=10% Similarity=0.082 Sum_probs=81.0
Q ss_pred CCCCCEEEECCCCC------H---H---HHHHHHHHHHHHHCCCCEEEEEE-CCHHHHHHHHHCCCCEEEEEEECCCCHH
Q ss_conf 45883799425886------9---9---99999999999610698489985-6405788885149813999840464135
Q gi|254780342|r 23 DSCTPVRFADTGWT------D---I---AATTAMTSVILEEILGYKTNIKL-LAVPVTFRSLKNKGIDIFMGYWYPSLEK 89 (309)
Q Consensus 23 ~~~~~I~ig~~~wt------e---~---~v~a~i~~~iLE~~lGy~Ve~~~-~~~~~~~~al~~G~iD~~~e~w~p~~~~ 89 (309)
+++.+++||..+++ + + -+.-.++.++.++ +|++++.+. .+-..++.+|.+|++|+.+.....+..
T Consensus 1 g~a~~LrVg~~~~pPf~~~~~~~~g~~~G~~vdl~~~ia~~-~g~~~~~v~~~~~~~~~~~l~~g~~Di~~~~~~~t~e- 78 (233)
T 1ii5_A 1 GSAMALKVGVVGNPPFVFYGEGKNAAFTGISLDVWRAVAES-QKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPE- 78 (233)
T ss_dssp CCSCCEEEEECCCTTTCEEC-----CEESHHHHHHHHHHHH-HTCCEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHH-
T ss_pred CCCCCEEEEEECCCCCEEEECCCCCCEEEHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCHH-
T ss_conf 99787799994799976653499992887899999999998-3997499956999999999986998767411568867-
Q ss_pred HHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 66665530470230135668535678634464123455356555566544201357854320055587664035452210
Q gi|254780342|r 90 FIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169 (309)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~ 169 (309)
++. ...+....+ +......+.+... ....+.++.+|. ++.++...+... ...++..+.
T Consensus 79 --R~~--~~~~~fs~p-~~~~~~~~~~~~~-~~~~~~~~~dl~-------g~~i~~~~g~~~----~~~~~~~~~----- 136 (233)
T 1ii5_A 79 --RAA--IEGITFTQP-YFSSGIGLLIPGT-ATPLFRSVGDLK-------NKEVAVVRDTTA----VDWANFYQA----- 136 (233)
T ss_dssp --HHT--STTEEECCC-CEEEEEEEEEEGG-GTTTCSSGGGGT-------TCEEEEETTSHH----HHHHHHTTC-----
T ss_pred --HHH--HHCCCCCCC-CCCCCCEEEEEEC-CCCCCCCHHHHH-------HHHCCCCCCCHH----HHHHHCCCC-----
T ss_conf --764--430234677-4225733688511-222456688875-------423055688689----999855366-----
Q ss_pred EEECCCCCCHHHHHHHHHHCCCCEEEEEECCCH
Q ss_conf 010366520189999999659936999412422
Q gi|254780342|r 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202 (309)
Q Consensus 170 ~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~ 202 (309)
+++..+ ...++..++.+|+.+++....+..
T Consensus 137 ~i~~~~---~~~~~~~~l~~grvD~~v~~~~~~ 166 (233)
T 1ii5_A 137 DVRETN---NLTAAITLLQKKQVEAVMFDRPAL 166 (233)
T ss_dssp EEEEES---SHHHHHHHHHTTSCSEEEEEHHHH
T ss_pred CCCCCC---CHHHHHHHHHCCEEEEEECCHHHH
T ss_conf 421357---479999998659179997869999
No 88
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=80.99 E-value=2.4 Score=20.58 Aligned_cols=191 Identities=8% Similarity=0.055 Sum_probs=97.7
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 58837994258869999999999999610698489985640578888514981399984046413566665530470230
Q gi|254780342|r 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV 103 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~ 103 (309)
....++++........++..+.+.+.+..-+..+++...++..+.+.|.+|++|+..-+..+... .+...
T Consensus 103 ~~~~~~i~~~~~~~~~~l~~~l~~~~~~~p~~~i~i~~~~~~~~~~~l~~g~~D~~i~~~~~~~~----------~l~~~ 172 (315)
T 1uth_A 103 STRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQT----------GFFQR 172 (315)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHHHHHHCTTCEEEEECTTSSCHHHHHHHTSCCEEEECCTTCCT----------TEEEE
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHCCCCEEEEEECCCCCC----------CCEEE
T ss_conf 54238984005778988999999988748876328997044889999867995299980799999----------82899
Q ss_pred CCCCCCCEEEEEEEHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHH
Q ss_conf 135668535678634464123-4553565555665442013578543200555876640354522100103665201899
Q gi|254780342|r 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182 (309)
Q Consensus 104 ~~~~~~~~~~~~v~~~~~~~~-i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~ 182 (309)
. .+. ....+++++.-.... .....++.+ ...+...............++..+.... ..+...+-..
T Consensus 173 ~-l~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---- 239 (315)
T 1uth_A 173 R-LFR-HRYVCMFRKDHPSAKSPMSLKQFSE------LEHVGVVALNTGHGEVDGLLERAGIKRR-MRLVVPHFIA---- 239 (315)
T ss_dssp E-EEE-ECEEEEEETTCSSCCSSCCHHHHHH------SEEEEECCTTSGGGGHHHHHHHTTCCCE-EEEEESSSTT----
T ss_pred E-EEE-EEEEEEECCCCHHHCCCCCHHHHHH------CCEEEEECCCCCHHHHHHHHHHCCCCCC-EEEECCCHHH----
T ss_conf 9-761-1069996287554328988367741------8717985598615899999997699873-3795285788----
Q ss_pred HHHHHHCCCCEEE-EEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHH
Q ss_conf 9999965993699-9412422320158514007865467786583544277778748899
Q gi|254780342|r 183 IRRDQRNNIPAVF-LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241 (309)
Q Consensus 183 l~~A~~~~~~~v~-~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~ 241 (309)
+..++.+|..+.+ +-+...-.....+++.++-|... |+..+..+.++. ...+|.+
T Consensus 240 ~~~~v~~g~gi~~lP~~~~~~~~~~~~l~~~~~~~~~---~~~~~~l~~~~~-~~~~p~~ 295 (315)
T 1uth_A 240 IGPILHSTDLIATVPQRFAVRCEVPFGLTTSPHPAKL---PDIAINLFWHAK-YNRDPGN 295 (315)
T ss_dssp HHHHHHTSSCBEEEEHHHHHHHTTTTTEEEEECSSCC---CCEEEEEEEEGG-GTTCHHH
T ss_pred HHHHHHCCCEEEECCHHHHHHHHHCCCEEEECCCCCC---CCEEEEEEECCC-CCCCHHH
T ss_conf 9999980999998019999977446997997789888---966899998689-8899899
No 89
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi}
Probab=79.80 E-value=2.2 Score=20.82 Aligned_cols=179 Identities=10% Similarity=0.034 Sum_probs=88.5
Q ss_pred CCCEEEECC-C---CC---H-H---HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHH
Q ss_conf 883799425-8---86---9-9---9999999999961069848998564057888851498139998404641356666
Q gi|254780342|r 25 CTPVRFADT-G---WT---D-I---AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93 (309)
Q Consensus 25 ~~~I~ig~~-~---wt---e-~---~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~ 93 (309)
++|||||.. + |+ + + -+...++.++.++ +|++++++......++..|.+|++|+.+..+..+. ...
T Consensus 4 A~tlrVg~~~~~pP~~~~d~~g~~~G~~vDl~~~ia~~-lg~~~~~~~~~~~~~~~~l~~g~~D~i~~~~~~t~-er~-- 79 (232)
T 3i6v_A 4 ADTVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKR-AGLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITD-ERD-- 79 (232)
T ss_dssp --CEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHH-HTCCEEEEECCGGGHHHHHHTTSCSEECSSCBCCH-HHH--
T ss_pred CCEEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCH-HHH--
T ss_conf 99599998799799369999997877599999999998-49967999767488999986799779997786897-898--
Q ss_pred HHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 55304702301356685356786344641234553565555665442013578543200555876640354522100103
Q gi|254780342|r 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173 (309)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 173 (309)
..+.. ...+......+.+.. .+..+|. +.+ +...+.. ........ + .+++.
T Consensus 80 ----~~~~~-s~p~~~~~~~~~~~~-------~~~~dl~-------~~~-~~~~~~~----~~~~~~~~--~---~~~~~ 130 (232)
T 3i6v_A 80 ----EVIDF-TQNYIPPTASSYVAT-------SDGADLS-------GIV-AAQTATI----QAGYIAES--G---ATLVE 130 (232)
T ss_dssp ----TTSEE-EEEEECCCEEEEEES-------STTCCTT-------SEE-EEETTSH----HHHHHHHS--S---SEEEE
T ss_pred ----HCCCE-ECCEECCCCEEEEEC-------CCHHHHC-------CCC-CEEECCH----HHHHHHCC--C---CEEEE
T ss_conf ----31414-032102661589983-------8868807-------860-2042531----77776356--8---45899
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCHH--HHCCCC--EEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHH
Q ss_conf 665201899999996599369994124223--201585--14007865467786583544277778748899999874
Q gi|254780342|r 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPI--NSDLNI--HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247 (309)
Q Consensus 174 ~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~--~~~~dl--~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~ 247 (309)
-.. ..++..++.+|+.+++.+..+.+. +.+++. +.+..+. ... ..+..++++ ++|++.+.+++
T Consensus 131 ~~~---~~~~~~~L~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~k----~~~~L~~~in~ 197 (232)
T 3i6v_A 131 FAT---PEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDV-PLG---GGVGMGLRE----SDGELRGKFDA 197 (232)
T ss_dssp ESS---HHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEE-ECS---SCEEEEECT----TCHHHHHHHHH
T ss_pred ECC---HHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCEEEECCCC-CCC---CEEEEEECC----CCHHHHHHHHH
T ss_conf 699---89999999769950999728999999986699719932677-766---417999808----99999999999
No 90
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=78.99 E-value=3 Score=19.96 Aligned_cols=245 Identities=11% Similarity=0.145 Sum_probs=117.5
Q ss_pred CCEEEECCCCCHH---HHHHHHHHHHHHHCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEEC------CCC---
Q ss_conf 8379942588699---9999999999961069848998--5----64057888851498139998404------641---
Q gi|254780342|r 26 TPVRFADTGWTDI---AATTAMTSVILEEILGYKTNIK--L----LAVPVTFRSLKNKGIDIFMGYWY------PSL--- 87 (309)
Q Consensus 26 ~~I~ig~~~wte~---~v~a~i~~~iLE~~lGy~Ve~~--~----~~~~~~~~al~~G~iD~~~e~w~------p~~--- 87 (309)
.|.++++ .|+.+ .......+..+|+..|.++++. + ++...+++++.+|.+|+..-.-. |..
T Consensus 2 ~~~k~a~-~~P~~~~~~~~~~~fa~~V~~~t~G~v~i~~~~~g~L~~~~e~~~~v~~G~vd~~~~~~~~~~~~~P~~~~~ 80 (301)
T 2pfy_A 2 TSWTMTA-EQPDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEID 80 (301)
T ss_dssp EEEEEEC-SSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGG
T ss_pred CEEEEEC-CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEECHHHHHCCCCCHHCC
T ss_conf 4517627-789988888999999999998759908999956876588799999997698775221046652247301025
Q ss_pred -------------------HHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -------------------3566665530470230135668535678634464123455356555566544201357854
Q gi|254780342|r 88 -------------------EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG 148 (309)
Q Consensus 88 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~ 148 (309)
...+.+...+..+..++....+.. .++. ...|.+.+||+ ++.+-+++.
T Consensus 81 ~lP~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~-~~~~-----~~pi~s~~Dlk-------G~kiR~~~~ 147 (301)
T 2pfy_A 81 SVPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQ-GIYT-----KKPVAALADLK-------GTRFRAYSA 147 (301)
T ss_dssp GSTTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCC-EEEE-----SSCCSSGGGGT-------TCEEEECSH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC-EEEE-----CCCCCCHHHHC-------CCEEECCCH
T ss_conf 6763547799999877444689999997359079775167761-3675-----79989968976-------986734745
Q ss_pred CCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH-HHCCC-CEEECCCCCCCCCCHHHH
Q ss_conf 3200555876640354522100103665201899999996599369994124223-20158-514007865467786583
Q gi|254780342|r 149 NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI-NSDLN-IHYLPGGEEISGFGEASV 226 (309)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~-~~~~d-l~~Ledp~~~~~~p~~~~ 226 (309)
.....++. +|. ..++.+ ..+++.|+++|.++-.....+... +.-++ .++.-+.... +.+.
T Consensus 148 -----~~~~~~~~--lGa---~pv~~~----~~evy~aLq~G~vDg~~~~~~~~~~~~~~ev~~~~~~~~~~--~~~~-- 209 (301)
T 2pfy_A 148 -----STSHMAAL--MGA---VPTTVQ----TPEVPQAFSTGVIDAMLTSPATGVDSQAWDYVKYYYDAQAF--IPQS-- 209 (301)
T ss_dssp -----HHHHHHHH--TTS---EEEECC----GGGHHHHHHTTSCSBEEECHHHHHHTTGGGTCCEEEECCCC--CCEE--
T ss_pred -----HHHHHHHH--CCC---CCCCCC----CCCHHHHHHCCCEECCCCCCCCCCCCCCCEEEEEEECCCCC--HHHH--
T ss_conf -----69999997--588---510244----42014677658410342473000123342144577338852--0488--
Q ss_pred HHHHCHHHHHHCH-HHHHHHHHC---------CCCHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 5442777787488-999998740---------8998999999999984599----9899999999985999998754754
Q gi|254780342|r 227 YTVVRSDYLDKCP-NISRLLKNI---------KFSVALENEMMKLILNNKQ----DRQFVGRTMLRTHPDLLKNWLIGVT 292 (309)
Q Consensus 227 ~~vv~~~~~~~~P-~~~~~L~~~---------~ls~~~~~~l~~~v~~~g~----~~~~vA~~wL~~n~~~~~~Wl~~~~ 292 (309)
..++++++-+.-| +..++|... ....+...+....+...|. -+.+..++|.+.-...|++|.+-+
T Consensus 210 ~~~~n~~~~~~L~~~~q~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~- 288 (301)
T 2pfy_A 210 FVIANKRAFQRLPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTLARNGMSVEPLPPQLAKELQAIGATMVSDWSKKA- 288 (301)
T ss_dssp EEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9998299885399999999999999999999999999979999999978599998999999999999899999999984-
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 56771379999987
Q gi|254780342|r 293 TFDGQDPSRQLERF 306 (309)
Q Consensus 293 ~~~~~~~~~~~~~~ 306 (309)
|.+..+.+.++
T Consensus 289 ---g~~~~~~ld~~ 299 (301)
T 2pfy_A 289 ---GADGQQLLDAY 299 (301)
T ss_dssp ---CHHHHHHHHHH
T ss_pred ---CHHHHHHHHHH
T ss_conf ---95899999996
No 91
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=78.35 E-value=3.2 Score=19.84 Aligned_cols=173 Identities=8% Similarity=-0.000 Sum_probs=80.9
Q ss_pred CCCEEEECCCCCHH-----------HHHHHHHHHHHHHCCCCEEEEEECC-----------------HHHHHHHHHCCCC
Q ss_conf 88379942588699-----------9999999999961069848998564-----------------0578888514981
Q gi|254780342|r 25 CTPVRFADTGWTDI-----------AATTAMTSVILEEILGYKTNIKLLA-----------------VPVTFRSLKNKGI 76 (309)
Q Consensus 25 ~~~I~ig~~~wte~-----------~v~a~i~~~iLE~~lGy~Ve~~~~~-----------------~~~~~~al~~G~i 76 (309)
.+.+++|..+-.-. -+-..|...+-+ .||++++++... -..++.+|.+|++
T Consensus 40 ~~~~~~~~~~~~~p~~~~~~~g~~~G~~vDl~~~ia~-~lg~~~e~~~~~~~~~g~~~~~~~~~~~~w~~~~~~l~~g~~ 118 (292)
T 1pb7_A 40 KKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLAR-TMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQA 118 (292)
T ss_dssp CCEEEEEEC--------CEEEEEEESHHHHHHHHHHH-HHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCE
T ss_conf 7428951168888633127999769984999999999-839947999866765454333465566888899999867976
Q ss_pred EEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 39998404641356666553047023013566853567863446412345535655556654420135785432005558
Q gi|254780342|r 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156 (309)
Q Consensus 77 D~~~e~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~ 156 (309)
|+.......+ .+ ..........+......+.+++.. .+..+.++. ..........|...+........
T Consensus 119 Di~~~~~~~t-~e-------R~~~~~Fs~Py~~~~~~~~v~~~~---~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~ 186 (292)
T 1pb7_A 119 DMIVAPLTIN-NE-------RAQYIEFSKPFKYQGLTILVKKGT---RITGINDPR-LRNPSDKFIYATVKQSSVDIYFR 186 (292)
T ss_dssp SEECSSCBCC-HH-------HHTTEEECSCSEEEEEEEEEETTC---CCCSTTCHH-HHSCBTTBCEECBTTSHHHHHHH
T ss_pred EEEEECCCCC-HH-------HHHHCCCCCEECCCCEEEEEECCC---CCCCCCHHH-CCCCCCCEEEEEECCHHHHHHHH
T ss_conf 7998668799-89-------994266651012477689998688---656453033-06863326997866479999998
Q ss_pred HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHH---HCCCCEEECC
Q ss_conf 766403545221001036652018999999965993699941242232---0158514007
Q gi|254780342|r 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN---SDLNIHYLPG 214 (309)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~---~~~dl~~Led 214 (309)
........ ....++.. -....+...++.+|+.+++....+.... ...+++.+..
T Consensus 187 ~~~~~~~~-~~~~~~~~---~~~~~~~~~~l~~g~~da~~~~~~~~~~~~~~~~~~~~~~~ 243 (292)
T 1pb7_A 187 RQVELSTM-YRHMEKHN---YESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGE 243 (292)
T ss_dssp TCGGGHHH-HHHHTTTC---BSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECSS
T ss_pred HHHHHHHC-CCCCEEEE---ECCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCEEEECC
T ss_conf 64666530-67746998---28899999998779735996258999999986898799377
No 92
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B*
Probab=78.09 E-value=3.2 Score=19.79 Aligned_cols=158 Identities=8% Similarity=0.025 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECC-----------HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCC
Q ss_conf 999999999961069848998564-----------057888851498139998404641356666553047023013566
Q gi|254780342|r 40 ATTAMTSVILEEILGYKTNIKLLA-----------VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108 (309)
Q Consensus 40 v~a~i~~~iLE~~lGy~Ve~~~~~-----------~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~~~~ 108 (309)
+.-.++..+-+. ||+++++.... -..+..+|.+|++|+....- +...+ + .........+.
T Consensus 60 ~~iDl~~~ia~~-lg~~~e~~~v~d~~~g~~~~~~w~~li~~l~~g~~Di~i~~~-tit~e--R-----~~~vdFs~Py~ 130 (284)
T 2a5s_A 60 FCIDILKKLSRT-VKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSL-TINEE--R-----SEVVDFSVPFV 130 (284)
T ss_dssp HHHHHHHHHHHH-HTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSC-BCCHH--H-----HTTEEECCCCE
T ss_pred EHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEEECC-CCCHH--H-----HHHCCCCCCCC
T ss_conf 729999999998-499779999358765765788889999766388589999588-07999--9-----95482777624
Q ss_pred CCEEEEEEEHHHHHCCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 85356786344641234553565--5556654420135785432005558766403545221001036652018999999
Q gi|254780342|r 109 GAKYMLAVNDVGFALGIKSYQDI--AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186 (309)
Q Consensus 109 ~~~~~~~v~~~~~~~~i~~~~dl--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A 186 (309)
.....+.+++... +....++ .+......+..+|.-.+.... ..++.. +......... .......+...+
T Consensus 131 ~~~~~ilv~k~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-~~~~~~~~~~-~~~~~~~e~~~~ 201 (284)
T 2a5s_A 131 ETGISVMVSRGTQ---VTGLSDKKFQRPHDYSPPFRFGTVPNGSTE----RNIRNN-YPYMHQYMTR-FNQRGVEDALVS 201 (284)
T ss_dssp EECEEEEEETTCC---CCSTTSHHHHSGGGSSSCCCEECCTTSHHH----HHHHTT-CHHHHHHHGG-GCCSSHHHHHHH
T ss_pred CCCEEEEEECCCC---CCCHHHHHCCCHHHCCCCEEEEEECCCHHH----HHHHHH-HHHHCCEEEE-ECCCCHHHHHHH
T ss_conf 6767789867986---666356532670331566189998375499----999976-5543126798-248999999999
Q ss_pred HHCCCCEEEEEECCCHH--HHC---CCCEEECCC
Q ss_conf 96599369994124223--201---585140078
Q gi|254780342|r 187 QRNNIPAVFLSWEPHPI--NSD---LNIHYLPGG 215 (309)
Q Consensus 187 ~~~~~~~v~~~wsp~~~--~~~---~dl~~Ledp 215 (309)
+.+|+.+++..-+|-.. ... ++++.+..+
T Consensus 202 l~~G~vDa~i~d~~~l~~~~~~~~~~~~~~v~~~ 235 (284)
T 2a5s_A 202 LKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSG 235 (284)
T ss_dssp HHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECC
T ss_pred HHCCCCCEEECCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 9869987896459999999985899858993588
No 93
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein structure initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=77.94 E-value=3.3 Score=19.76 Aligned_cols=199 Identities=12% Similarity=0.091 Sum_probs=106.0
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
..+.+++||..++....++..++..+-+..-...+.+...+...+.+.+.+|++|+..-+..+... . .+ .+.
T Consensus 98 ~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~l~~g~~D~ai~~~~~~~~-~-----~~-~l~- 169 (310)
T 2esn_A 98 QSQRTFVFAATDYTAFALLPPLMNRLQHSAPGVRLRLVNAERKLSVEALASGRIDFALGYDEEHER-L-----PE-GIQ- 169 (310)
T ss_dssp TCCCEEEEECCHHHHHHHHHHHHHHHHHHSTTCEEEEECCSSSCCHHHHHHTSSSEEEECCSTTCC-C-----CT-TEE-
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHCCCCCCEEEEECCCCCC-C-----CC-CCE-
T ss_conf 447624787531377889999999974228863211211550333222105774058982476555-7-----77-742-
Q ss_pred ECCCCCCCEEEEEEEHHHHH-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHH
Q ss_conf 01356685356786344641-23455356555566544201357854320055587664035452210010366520189
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~~-~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a 181 (309)
.-..+. ....++++...+. ..-.+..++.. ...+...+...............++... ..+...+ +.
T Consensus 170 ~~~l~~-~~~~~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~-i~~~~~s----~~ 237 (310)
T 2esn_A 170 AHDWFA-DRYVVVARRDHPRLAGAPTLEGYLA------ERHAVVTPWNEDSGVIDRLLARSGLRRE-VAVQLPT----VL 237 (310)
T ss_dssp EEEEEE-ECEEEEEESSCTTCSSSCCHHHHHT------SEEEEECTTCCSSCHHHHHHHHTTCCCE-EEEEESC----HH
T ss_pred EEEEEE-EEEEEECCCCCHHHCCCCCHHHHHC------CCCEEEECCCCCCHHHHHHHHHCCCCCC-CEEEECC----HH
T ss_conf 688245-4478732778842359999789813------9818983798862377789997499987-2599698----99
Q ss_pred HHHHHHHCCCCEEEEEECCCHH----HHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 9999996599369994124223----201585140078654677865835442777787488999998740
Q gi|254780342|r 182 QIRRDQRNNIPAVFLSWEPHPI----NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 182 ~l~~A~~~~~~~v~~~wsp~~~----~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
.+...+.++..+.+ -|... ...++++.++-|.+. |+..+..+.++ --..+|...-+.+++
T Consensus 238 ~~l~~v~~g~~i~~---lP~~~~~~~~~~~~l~~~~~p~~~---~~~~i~l~~h~-~~~~~p~~~~l~~~i 301 (310)
T 2esn_A 238 AALFLAGSTDFLLT---APRHAARALAEAAGLALYPAPFDI---PPYVLRLYSHV-QHVGRDAHAWMIGQL 301 (310)
T ss_dssp HHHHHHHTSSCEEE---EEHHHHHHHHHHHTEEEECCSSCC---CCEEEEEEEEC-C--CCHHHHHHHHHS
T ss_pred HHHHHHHHCCEEEH---HHHHHHHHHHHCCCEEEECCCCCC---CCEEEEEEECC-CCCCCHHHHHHHHHH
T ss_conf 99999993997883---689999988555997998289899---86689999898-877998999999999
No 94
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=77.13 E-value=3.4 Score=19.62 Aligned_cols=251 Identities=12% Similarity=0.025 Sum_probs=114.9
Q ss_pred CCEE--EECCCCCHHHHHHHHHHHHHHHCCCCEEEEE--ECCH-HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHH----
Q ss_conf 8379--9425886999999999999961069848998--5640-57888851498139998404641356666553----
Q gi|254780342|r 26 TPVR--FADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE---- 96 (309)
Q Consensus 26 ~~I~--ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~--~~~~-~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~---- 96 (309)
+||+ |+...=.+.-+.+-+++..|++.+|-+|.+. +|.. .+....+.+-.-|-+.-...............
T Consensus 8 k~I~iiVp~~aGGg~D~~aR~~a~~l~~~lg~~vvV~N~pGagG~~g~~~~~~~~~dg~t~l~~~~~~~~~~~~~~~~~~ 87 (301)
T 2qpq_A 8 KPLDIIVTFPPGGGTDMLARLIGNYLTESLGQTAVVENRPGASGNVGARLVADRAPDGYSLLMVNSSFAVNPGVFRNLPF 87 (301)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHHHHHHHGGGSCEEEEECCTGGGHHHHHHHHTSCSSSSEEEEEETHHHHHHHHCTTCSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCHHEEEHHHCCCCCC
T ss_conf 98899980099868999999999999998799879996799611999999985688998257723312341755088988
Q ss_pred --CCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHCCCCCCCEEEEC
Q ss_conf --0470230135668535678634464123455356555566544201-3578543200555876640354522100103
Q gi|254780342|r 97 --EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI-YGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173 (309)
Q Consensus 97 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 173 (309)
...+..++. .......++|+. +..++++.++.+....-.+++ +|.. +.+......-.......+..+ +.++
T Consensus 88 ~~~~d~~~v~~-~~~~~~~lvv~~---ds~~~t~~el~~~ak~~p~~~~~g~~-g~g~~~~~~~~~~~~~~g~~~-~~Vp 161 (301)
T 2qpq_A 88 DPKKDFAAVIN-VAYVPSVFVVPA---GSKYKTLGELMAAAKQTNTQVTYGSC-GNGTPQHLAGELLNVSAKTHM-VHVP 161 (301)
T ss_dssp CTTTTEEEEEE-EEEEEEEEEEET---TCSCCSHHHHHHHTCSSSCCCEEEES-STTSHHHHHHHHHHHHHTCCC-EEEE
T ss_pred CHHHHHHEEEE-ECCCCEEEEECC---CCCCCCHHHHHHHHHHCCCCCEEECC-CCCCHHHHHHHHHHHHCCCCC-EEEE
T ss_conf 82664201233-135656999737---77744026777764310323425137-898799999999986145662-3661
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCC--HHHHCCCCEEEC--CCCCCCCCCH-----------HH----HHHHHCHHH
Q ss_conf 6652018999999965993699941242--232015851400--7865467786-----------58----354427777
Q gi|254780342|r 174 ASELASFSQIRRDQRNNIPAVFLSWEPH--PINSDLNIHYLP--GGEEISGFGE-----------AS----VYTVVRSDY 234 (309)
Q Consensus 174 ~s~~~~~a~l~~A~~~~~~~v~~~wsp~--~~~~~~dl~~Le--dp~~~~~~p~-----------~~----~~~vv~~~~ 234 (309)
-.. -++...|+-.|++++.....+. ..+..-+++.|- .++..-.+|. .. ....+.++.
T Consensus 162 y~G---~~~~~~all~G~vd~~~~~~~~~~~~i~~G~l~~La~~~~~R~~~~PdvPT~~E~G~~~~~~~~~~g~~ap~gt 238 (301)
T 2qpq_A 162 YKG---CGPALNDVLGSQIGLAVVTASSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGAT 238 (301)
T ss_dssp CSS---HHHHHHHHHTTSSSCEEEEHHHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTC
T ss_pred CCC---HHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCEEEEEEEEECCCCC
T ss_conf 178---58888887558445553467876644037856899996787686679999817858887458763212306999
Q ss_pred HHHCHHHHHHHHHC---CCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87488999998740---899899999999998--45999899999999985999998754
Q gi|254780342|r 235 LDKCPNISRLLKNI---KFSVALENEMMKLIL--NNKQDRQFVGRTMLRTHPDLLKNWLI 289 (309)
Q Consensus 235 ~~~~P~~~~~L~~~---~ls~~~~~~l~~~v~--~~g~~~~~vA~~wL~~n~~~~~~Wl~ 289 (309)
-+++.+.|++. .+..+++.+...... ..-+++++ .++|+++..+.|.+-++
T Consensus 239 ---p~~~~~~l~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~i~~~~~~~~~l~k 294 (301)
T 2qpq_A 239 ---PMAVRQKLYDGIAKVMQRDDVQKKLADLGYSTASDGPEV-FQKMVETDIDRFSALTK 294 (301)
T ss_dssp ---CHHHHHHHHHHHHHHHTCHHHHHHHHHHTCEEEEECHHH-HHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHHHHHHHH
T ss_conf ---999999999999999729999999997799168999999-99999999999999999
No 95
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=75.47 E-value=3.8 Score=19.33 Aligned_cols=250 Identities=10% Similarity=0.003 Sum_probs=116.8
Q ss_pred CCCEE--EECCCCCHHHHHHHHHHHHHHHCCCCEEEE--EECCH-HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHC--
Q ss_conf 88379--942588699999999999996106984899--85640-578888514981399984046413566665530--
Q gi|254780342|r 25 CTPVR--FADTGWTDIAATTAMTSVILEEILGYKTNI--KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE-- 97 (309)
Q Consensus 25 ~~~I~--ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~--~~~~~-~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~-- 97 (309)
.+||+ |+...=.+.-..+-+++..|++.+|-+|.+ ++|.. .+.+..+.+..-|-+.-.-.... ........+
T Consensus 16 ~k~I~iiVp~~~GGg~D~~aR~~a~~l~k~lg~~v~V~N~pGagG~~g~~~~~~~~~Dg~t~~~~~~~-~~~~~~l~~~~ 94 (312)
T 2f5x_A 16 ERPVNMVVPFAAGGPTDNVARSLAESMRPTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAG-FSTAPSLYKNP 94 (312)
T ss_dssp SSCEEEEESSCTTSHHHHHHHHHHHHHHHHHSSCEEEEECCCGGGHHHHHHHHTSCSSSSEEEEEETH-HHHGGGTCSCC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCC-CCCCCCCCCCC
T ss_conf 99989998008986899999999999999869987999789821599999999569999815652155-34452001578
Q ss_pred -----CCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCC-CCC-CCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf -----4702301356685356786344641234553565555665442013-578-543200555876640354522100
Q gi|254780342|r 98 -----GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY-GIE-PGNEGNQRILDMINNNKFSLKGFR 170 (309)
Q Consensus 98 -----~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~l~~~~~~ 170 (309)
..+..++.. ......+++. +...++++.++.+..+.-.+.+. +.. .+...+.......+ ..|.. ++
T Consensus 95 ~~~~~~df~~i~~~-~~~~~~~~v~---~~s~~~t~~dli~~ak~~p~~v~~g~~g~gs~~~~~~~~~~~--~~G~~-~~ 167 (312)
T 2f5x_A 95 GYEPYTSFEPIGLV-VDVPMTIIAR---GDFPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVE--ALGVN-LL 167 (312)
T ss_dssp SSCTTTSEEEEEEE-EEEEEEEEEC---TTCSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHH--HHTCC-CE
T ss_pred CCCHHHHHCCCCCE-ECCCEEEEEC---CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH--HCCCC-EE
T ss_conf 88848863300100-0475689867---988403378999987338776146437899488999989998--63984-44
Q ss_pred EECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH--HHCCCCEEEC--CCCCCC-----------CCCHHH----HHHHHC
Q ss_conf 103665201899999996599369994124223--2015851400--786546-----------778658----354427
Q gi|254780342|r 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPI--NSDLNIHYLP--GGEEIS-----------GFGEAS----VYTVVR 231 (309)
Q Consensus 171 ~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~--~~~~dl~~Le--dp~~~~-----------~~p~~~----~~~vv~ 231 (309)
+++-..+ ++...++..|++++......... +...+++.|- .++..- +++... -...+.
T Consensus 168 ~V~y~G~---~~~~~al~~G~vd~~~~~~~~~~~~~~~g~l~~La~~~~~r~~~~pdvPT~~E~G~~~~~~~~~~g~~ap 244 (312)
T 2f5x_A 168 TIPYKGT---APAMNDLLGKQVDLMCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAP 244 (312)
T ss_dssp EEECSSH---HHHHHHHHTTSSCEEEEEHHHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEE
T ss_pred ECCCCCC---HHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCEEEEEEEEECC
T ss_conf 1356771---7777775368313123573001445534675499982776554368999806527887503552025326
Q ss_pred HHHHHHCHHHHHHHHHC---CCCHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 77787488999998740---899899999999998----45999899999999985999998754
Q gi|254780342|r 232 SDYLDKCPNISRLLKNI---KFSVALENEMMKLIL----NNKQDRQFVGRTMLRTHPDLLKNWLI 289 (309)
Q Consensus 232 ~~~~~~~P~~~~~L~~~---~ls~~~~~~l~~~v~----~~g~~~~~vA~~wL~~n~~~~~~Wl~ 289 (309)
++. -+++.+.|++. .+.+++..+...+.. .+..++++ .++|+++.-+.|.+=++
T Consensus 245 ~gt---p~~~v~~l~~a~~~~~~~pe~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~~~~~~~lik 305 (312)
T 2f5x_A 245 KGT---PKPVVDKLVKSLQAGLADPKFQERMKQLGAEVLTNEANPEA-LQAKVKQQVPQWAELFK 305 (312)
T ss_dssp TTC---CHHHHHHHHHHHHHHHTCHHHHHHHHHTTCEECGGGCSHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHH
T ss_conf 779---99999999999999973999999999769961478899999-99999999999999999
No 96
>3fd3_A Chromosome replication initiation inhibitor protein; structural genomics, LYSR, PSI-2, protein structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=75.42 E-value=1.8 Score=21.42 Aligned_cols=160 Identities=8% Similarity=-0.138 Sum_probs=78.1
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECC
Q ss_conf 83799425886999999999999961069848998564057888851498139998404641356666553047023013
Q gi|254780342|r 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105 (309)
Q Consensus 26 ~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~ 105 (309)
.|++||...-+-+.-+.-.++...+. .++++++...++..+.+.+.+|++|+..-.. +..... +... .
T Consensus 2 ~tlria~~~~sl~~wl~P~L~~f~~~-~pi~l~l~~~~~~~~~~~l~~g~~D~aI~~~-~~~~~~---------l~~~-~ 69 (208)
T 3fd3_A 2 VTLNIATNADSLGTWFLDAVSKFTGG-SDYLVNIAVDDQDHTVEWLRGGRVLAAVTAH-DKPVQG---------CRVT-P 69 (208)
T ss_dssp CEEEEEECHHHHTTTHHHHHHHHHHT-SSCEEEEEECCSSCHHHHHHTTSCSEEEESC-CSCCTT---------CEEE-E
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHH-CCCEEEEEEECCHHHHHHHHCCCEEEEEECC-CCCCCC---------EEEE-E
T ss_conf 57899877387898899999999997-9797999994566278887579759999838-999998---------6999-9
Q ss_pred CCCCCEEEEEEEHHHHH--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHH
Q ss_conf 56685356786344641--2345535655556654420135785432005558766403545221001036652018999
Q gi|254780342|r 106 NLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183 (309)
Q Consensus 106 ~~~~~~~~~~v~~~~~~--~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l 183 (309)
....-....+-|.+... ....+..+|... ..+.................. ...........+ ...+
T Consensus 70 L~~~~~~~vasp~~~~~~~~~~~~~~dL~~~------p~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~ 137 (208)
T 3fd3_A 70 LGVLRYHATASPDFMARHFADGVTPAALARA------PGLTFNQKDRLQASWIRTALG--EDVSYPTHWLPS----TDGF 137 (208)
T ss_dssp EEEEEEEEEECHHHHHHHCTTCSCHHHHTTS------CEEESSTTCCHHHHHHHHHHS--SCCCCCEEECCC----HHHH
T ss_pred EEEEEEEEEECHHHHHHCCCCCCCHHHHHCC------CCCCCCCCCCCHHHHHHHCCC--CCCCCCEEEECC----HHHH
T ss_conf 4602799998349998637999999999508------633225666411355664147--665443378888----9999
Q ss_pred HHHHHCCCCEEEEEECCCHHHH----CCCCEEE
Q ss_conf 9999659936999412422320----1585140
Q gi|254780342|r 184 RRDQRNNIPAVFLSWEPHPINS----DLNIHYL 212 (309)
Q Consensus 184 ~~A~~~~~~~v~~~wsp~~~~~----~~dl~~L 212 (309)
.+++..|..+.+ -|+++.. ...|+-|
T Consensus 138 ~~~v~~G~Gia~---lP~~~v~~~l~~g~Lv~l 167 (208)
T 3fd3_A 138 VKASLAGMGWGL---NPVQLVAEHLAAGRLVEL 167 (208)
T ss_dssp HHHHHTTSCBEE---EEHHHHHHHHHHTSSEES
T ss_pred HHHHHHCCCEEE---CCHHHHHHHHHCCCEEEE
T ss_conf 999993994774---859999999878986897
No 97
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 1qvs_A 2o6a_A 2o68_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=68.24 E-value=5.5 Score=18.27 Aligned_cols=211 Identities=14% Similarity=-0.005 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC----CCCEEEEEEECCCCHHHHHHHHHCCCEEEEC-------
Q ss_conf 69999999999999610698489985640578888514----9813999840464135666655304702301-------
Q gi|254780342|r 36 TDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN----KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA------- 104 (309)
Q Consensus 36 te~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~----G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~------- 104 (309)
+...+...|++. .|+++|++|++..+++..+...|.. ...|+....-.+.... ...++.+..+.
T Consensus 8 ~~~~~~~~i~~~-Fe~~tGIkV~~~~~~~~~~~~kl~aeg~~~~~DV~~~~~~~~~~~----~~~~gll~~~~~~~~~~~ 82 (309)
T 1nnf_A 8 QQKEAATAVAKA-FEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFAD----LSEAGLLAPISEQTIQQT 82 (309)
T ss_dssp SCHHHHHHHHHH-HHHHSCCCEEEEECCHHHHHHHHHHHGGGCCCSEEEESCGGGHHH----HHHTTCBCCCCHHHHHTT
T ss_pred CCHHHHHHHHHH-HHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCCEEEECCHHHHHH----HHHCCCCCCCCCHHHHHH
T ss_conf 898899999999-988559779999897099999999746899987899687899999----986798664442334221
Q ss_pred ------CCCCC-------CEEEEEEEH-HHHH-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC-----
Q ss_conf ------35668-------535678634-4641-234553565555665442013578543200555876640354-----
Q gi|254780342|r 105 ------ENLQG-------AKYMLAVND-VGFA-LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF----- 164 (309)
Q Consensus 105 ------~~~~~-------~~~~~~v~~-~~~~-~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l----- 164 (309)
....+ ...++++.. .... ....+|.+|.+......... .................++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~~~p~~~~dl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (309)
T 1nnf_A 83 AQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKSVLDYATPKWKGKIGY--VSTSGAFLEQVVALSKMKGDKVALN 160 (309)
T ss_dssp CCTTCCCCTTSCCEEEEEEEEEEEEETTTCCGGGSCSSGGGGGSGGGTTTEEE--CTTSHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHCCCCCCCCEEEEEEEEEEEEEEHHHCCCCCCCCCHHHHCCHHHHCCCCC--CCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 02212446676278877412578752333035445466887416053203334--7753016777778988507388999
Q ss_pred ---CCC-CEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCC------CEEECCCCCCC-CCC-HHHHHHHHCH
Q ss_conf ---522-10010366520189999999659936999412422320158------51400786546-778-6583544277
Q gi|254780342|r 165 ---SLK-GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN------IHYLPGGEEIS-GFG-EASVYTVVRS 232 (309)
Q Consensus 165 ---~~~-~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~d------l~~Ledp~~~~-~~p-~~~~~~vv~~ 232 (309)
.+. .......+ .....++.+|+..+...|+.++.....+ ...+..+.... +.. .....-|+ +
T Consensus 161 ~~~~l~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~aI~-k 234 (309)
T 1nnf_A 161 WLKGLKENGKLYAKN-----SVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVL-K 234 (309)
T ss_dssp HHHHHHHHEEECSSH-----HHHHHHHHTTSCSEEEEEHHHHHHHHHHHCGGGCSEEEECCCTTCGGGCEEEEEEEEB-T
T ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCEEEC-C
T ss_conf 999987531011476-----6999999758776410140577777640133334442111223688732233211202-7
Q ss_pred HHHHHCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 77874889999987408998999999999
Q gi|254780342|r 233 DYLDKCPNISRLLKNIKFSVALENEMMKL 261 (309)
Q Consensus 233 ~~~~~~P~~~~~L~~~~ls~~~~~~l~~~ 261 (309)
+ .+||+++..|=++-+|.+-+..+...
T Consensus 235 ~--a~n~~~A~~Fi~flls~e~Q~~~a~~ 261 (309)
T 1nnf_A 235 A--SKNQAEAQKFVDFLASKKGQEALVAA 261 (309)
T ss_dssp T--CSCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9--99899999999984599999999973
No 98
>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic, chemotaxis binding proteins for active transport; 2.00A {Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A
Probab=67.67 E-value=5.7 Score=18.20 Aligned_cols=36 Identities=6% Similarity=-0.001 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8998999999999984599989999999998599999
Q gi|254780342|r 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285 (309)
Q Consensus 249 ~ls~~~~~~l~~~v~~~g~~~~~vA~~wL~~n~~~~~ 285 (309)
.+.++++.+|..+.... .|+++-.+.|-+-++-.++
T Consensus 433 ~~~~~~~d~ll~~a~~~-~d~~~r~~~~~~~~~~l~e 468 (507)
T 1dpe_A 433 KWCYKPFEDLIQPARAT-DDHNKRVELYKQAQVVMHD 468 (507)
T ss_dssp CCCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH
T ss_conf 67999999999998636-9999999999999999997
No 99
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=66.41 E-value=3.8 Score=19.31 Aligned_cols=74 Identities=9% Similarity=0.003 Sum_probs=42.1
Q ss_pred HHHHHCCCCEEEEEECCCHHHHCCCCE---EECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999965993699941242232015851---40078654677865835442777787488999998740899899999999
Q gi|254780342|r 184 RRDQRNNIPAVFLSWEPHPINSDLNIH---YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260 (309)
Q Consensus 184 ~~A~~~~~~~v~~~wsp~~~~~~~dl~---~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~ 260 (309)
.+++.+|+..+...|+.++......-. +.-.+.+.+.++. .+ .+.++ .+||+++.-|=++-+|.+.+..+..
T Consensus 192 ~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~--~i~k~--s~~~e~A~~fi~~l~S~e~q~~~~~ 266 (325)
T 1pot_A 192 ANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMD-SL--AIPAN--AKNKEGALKLINFLLRPDVAKQVAE 266 (325)
T ss_dssp HHHHHTTSCSEEEEEHHHHHHHHTTSCCEEEECCTTCCEEEEE-EE--BCBTT--CTTHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHCCCCCEEEEECHHHHHHHHCCCCEEEEECCCCCEEEEE-EE--EEECC--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7887606524588610668999742798039943688605445-46--87789--9998999999999834999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780342|r 261 LI 262 (309)
Q Consensus 261 ~v 262 (309)
..
T Consensus 267 ~~ 268 (325)
T 1pot_A 267 TI 268 (325)
T ss_dssp HH
T ss_pred HH
T ss_conf 73
No 100
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=64.94 E-value=6.4 Score=17.86 Aligned_cols=252 Identities=9% Similarity=-0.012 Sum_probs=118.7
Q ss_pred CCCEEEE--CCCCCHHHHHHHHHHHHHHHCCCCEEEEE--ECC-HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHC--
Q ss_conf 8837994--25886999999999999961069848998--564-0578888514981399984046413566665530--
Q gi|254780342|r 25 CTPVRFA--DTGWTDIAATTAMTSVILEEILGYKTNIK--LLA-VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE-- 97 (309)
Q Consensus 25 ~~~I~ig--~~~wte~~v~a~i~~~iLE~~lGy~Ve~~--~~~-~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~-- 97 (309)
.+||+|- ...=.+.-..+-+++..||+.+|-+|.+. +|. ..+.+..+.+-.-|-|.-.-..............
T Consensus 18 ~k~I~ivVp~~aGGg~D~~aR~~a~~l~k~~g~~v~V~N~pGagG~~g~~~~~~~~~Dg~ti~~~~~~~~~~~~~~~~~~ 97 (314)
T 2dvz_A 18 SKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKD 97 (314)
T ss_dssp SSCEEEEESSCTTSHHHHHHHHHHHHHHHHHTSCEEEEECCCGGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHSTTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCC
T ss_conf 99889998108986899999999999999869987999669827899999998569999847761240544334541357
Q ss_pred ------CCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf ------470230135668535678634464123455356555566544201-3578543200555876640354522100
Q gi|254780342|r 98 ------GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI-YGIEPGNEGNQRILDMINNNKFSLKGFR 170 (309)
Q Consensus 98 ------~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (309)
..+..++... .....+++.. +..++++.++.+....-.+.+ +|.....+........+. ..+|+. ++
T Consensus 98 ~~~d~~~d~~~v~~~~-~~~~v~~v~~---~s~~~t~~e~i~~ak~~p~~l~~g~~~~gs~~~~~~~~l~-~~~G~~-~~ 171 (314)
T 2dvz_A 98 LPYDPIKDFQPVTNFA-NTANVVAVNP---KFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFK-MATGTD-IV 171 (314)
T ss_dssp CSCCTTTSEEEEEEEE-EECEEEEECT---TSSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHH-HHHTCC-CE
T ss_pred CCCCHHHHHHHHHEEE-CCCEEEECCC---CCCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH-HHHCCC-EE
T ss_conf 8987688755542022-0430343167---7775678999999863998457620466422456799999-985997-59
Q ss_pred EECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH--HHCCCCEEEC--CCCCCC-----------CCCHHH----HHHHHC
Q ss_conf 103665201899999996599369994124223--2015851400--786546-----------778658----354427
Q gi|254780342|r 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPI--NSDLNIHYLP--GGEEIS-----------GFGEAS----VYTVVR 231 (309)
Q Consensus 171 ~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~--~~~~dl~~Le--dp~~~~-----------~~p~~~----~~~vv~ 231 (309)
.++-..+ ++...++-+|+.++......... +...+++.|- .++..- ++|... -..++.
T Consensus 172 ~Vpy~g~---~~~~~all~G~vd~~~~~~~~~~~~v~~G~lk~lav~~~~r~~~~pdvPT~~E~g~~~~~~~~~~gi~ap 248 (314)
T 2dvz_A 172 HVPYKGS---GPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAP 248 (314)
T ss_dssp EEECSSH---HHHHHHHHHTSSSEEEEEHHHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEE
T ss_pred EEECCCC---HHHHHHHHCCEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCC
T ss_conf 9404884---2446888679478985132111113307971367762787676568999717645433322100000368
Q ss_pred HHHHHHCHHHHHHHHHC---CCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 77787488999998740---899899999999998--45999899999999985999998754
Q gi|254780342|r 232 SDYLDKCPNISRLLKNI---KFSVALENEMMKLIL--NNKQDRQFVGRTMLRTHPDLLKNWLI 289 (309)
Q Consensus 232 ~~~~~~~P~~~~~L~~~---~ls~~~~~~l~~~v~--~~g~~~~~vA~~wL~~n~~~~~~Wl~ 289 (309)
++. .+++.+.|++. .+.++++.+...+.. ..-+++++ .++|+++..+.+.+=++
T Consensus 249 ~gt---p~e~v~~l~~a~~~~~~~~e~~~~~~~~g~~~~~~~~~~-~~~~i~~~~~~~~~lik 307 (314)
T 2dvz_A 249 KGT---PMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEE-FAKEIKEQYDWAQDVVK 307 (314)
T ss_dssp TTC---CHHHHHHHHHHHHHHHTCHHHHHHHHHHTEEECCCCHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHHHHHHHH
T ss_conf 999---999999999999999709999999997799178899999-99999999999999999
No 101
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2i0c_A* 3c31_A* 1txf_A* 3c32_A* 3c33_A* 3c34_A* 3c35_A* 3c36_A* 2wky_A* ...
Probab=64.59 E-value=6.5 Score=17.82 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=40.9
Q ss_pred CCCCEEEECCCCCH-----------------HHHHHHHHHHHHHHCCCCEEEEEECC-------------HHHHHHHHHC
Q ss_conf 58837994258869-----------------99999999999961069848998564-------------0578888514
Q gi|254780342|r 24 SCTPVRFADTGWTD-----------------IAATTAMTSVILEEILGYKTNIKLLA-------------VPVTFRSLKN 73 (309)
Q Consensus 24 ~~~~I~ig~~~wte-----------------~~v~a~i~~~iLE~~lGy~Ve~~~~~-------------~~~~~~al~~ 73 (309)
+++|+.+++..++= .-+--.|+.++.+. +|+++++.... -..+...+.+
T Consensus 2 ~~ktl~v~t~~~~P~~~~~~~~~~~~~n~~~~G~dvDl~~~ia~~-lg~~~~~~~v~~~~~~~~~~~~~~w~~~~~~l~~ 80 (259)
T 3g3k_A 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTH-LGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELID 80 (259)
T ss_dssp -CCCEEEEECCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHH-HTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHT
T ss_pred CCEEEEEEECCCCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 986999997864898746468887678995688589999999998-0997589973555545334356788999876410
Q ss_pred CCCEEEEEEE
Q ss_conf 9813999840
Q gi|254780342|r 74 KGIDIFMGYW 83 (309)
Q Consensus 74 G~iD~~~e~w 83 (309)
|++|+.+...
T Consensus 81 g~~D~~~~~~ 90 (259)
T 3g3k_A 81 HKADLAVAPL 90 (259)
T ss_dssp TSCSEECSSC
T ss_pred CCCCEEEECC
T ss_conf 2357786358
No 102
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=64.25 E-value=6.6 Score=17.78 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=30.7
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH----CCCCEEEEEE
Q ss_conf 358345883799425886999999999999961069848998564057888851----4981399984
Q gi|254780342|r 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK----NKGIDIFMGY 82 (309)
Q Consensus 19 ~~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~----~G~iD~~~e~ 82 (309)
+++.++.++|+|-. |.+...... +++ .+. +|+...+++..+..-|. +...|++...
T Consensus 27 ~~a~A~~~~l~vy~--~~~~~~~~~----~~~-~Fe-kv~~i~~~~~~~~~kl~a~~~~~~~Dvv~~~ 86 (346)
T 2voz_A 27 RRASAQSRTINLYS--SRHYNTDDA----LYD-AFG-EVNLIEASAEELIERIQSEGANSPGDILFTV 86 (346)
T ss_dssp -------CEEEEEE--SCCCTTHHH----HHH-HHS-EEEEEECCHHHHHHHHHHTGGGCCCSEEEEE
T ss_pred CCCCCCCCEEEEEE--CCCCCHHHH----HHH-HCE-EEEEEECCCHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 54104599799986--888322699----985-201-6888987829999999964789996399606
No 103
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=60.16 E-value=7.3 Score=17.47 Aligned_cols=50 Identities=12% Similarity=0.073 Sum_probs=34.7
Q ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHCC
Q ss_conf 83458837994258869999999999999610698489985--6405788885149
Q gi|254780342|r 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNK 74 (309)
Q Consensus 21 ~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~--~~~~~~~~al~~G 74 (309)
+|+-.+|.+||+ -=+.+++..++-+||. +||+|.... +|.+.++.-|..|
T Consensus 151 SaNptkplHvGH---lR~aiiGd~Lanll~~-~G~~V~re~YinD~G~Qi~~l~~s 202 (607)
T 1f7u_A 151 SPNIAKPFHAGH---LRSTIIGGFLANLYEK-LGWEVIRMNYLGDWGKQFGLLAVG 202 (607)
T ss_dssp CCBTTSCCBGGG---HHHHHHHHHHHHHHHH-TTCEEEEEEEEBCCSHHHHHHHHH
T ss_pred CCCCCCCCCHHH---HHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 798998863313---5627999999999998-799188854247554188999999
No 104
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=58.59 E-value=8.2 Score=17.14 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHHH
Q ss_conf 83458837994258869999999999999610698489985--6405788885
Q gi|254780342|r 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSL 71 (309)
Q Consensus 21 ~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~--~~~~~~~~al 71 (309)
+|+-.+|.+||. -=+.+++..++.+||. .||+|.... +|.+.++.-|
T Consensus 38 SpN~~K~lHVGH---lRstiIGdslaRil~~-~G~~V~r~nylgD~G~Q~g~l 86 (464)
T 3fnr_A 38 SANPTGPLHIGH---ARGAVFGDTLTRLARH-LGYKFNTEYYVNDAGNQIYLL 86 (464)
T ss_dssp CCCSSSSCBGGG---HHHHHHHHHHHHHHHH-TTCEEEEEEEECCCHHHHHHH
T ss_pred CCCCCCCCCHHC---CHHHHHHHHHHHHHHH-CCCEEEEEEEECCCHHHHHHH
T ss_conf 999898752520---0416999999999998-699278999878859999999
No 105
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=58.50 E-value=8.3 Score=17.13 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=9.6
Q ss_pred CCEEEEEECCHHHHHHHHHCCCCEEEEE
Q ss_conf 9848998564057888851498139998
Q gi|254780342|r 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMG 81 (309)
Q Consensus 54 Gy~Ve~~~~~~~~~~~al~~G~iD~~~e 81 (309)
|.++++...+....+..+.+++.|++.-
T Consensus 128 Gi~~~~~~~~~~~~~~~~~~~~~d~~~~ 155 (229)
T 3o6p_A 128 GVKVTVSPVPFSVRLDRSNKGDFDAVIG 155 (229)
T ss_dssp TEEEEEEEECHHHHHHHHHHTCCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHCCCCCEEEE
T ss_conf 8525774152014899975578777987
No 106
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginosa PA01,structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=54.41 E-value=9.6 Score=16.70 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=77.0
Q ss_pred CCCEEEEC-CCCC------HH----HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHH
Q ss_conf 88379942-5886------99----9999999999961069848998564057888851498139998404641356666
Q gi|254780342|r 25 CTPVRFAD-TGWT------DI----AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93 (309)
Q Consensus 25 ~~~I~ig~-~~wt------e~----~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~ 93 (309)
.++|+||. .+|+ +. -+...++..+.+ .+|+++++++.+......++.+|++|+.+....-+ ...
T Consensus 14 ~g~l~V~~~~~~pP~~~~~~~g~~~G~~vdl~~~i~~-~~g~~~~~~~~~~~~~~~~~~~g~~d~~~~~~~~t--~~~-- 88 (239)
T 3kbr_A 14 SGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAE-SLGAKLVVVPTSWPNLMRDFADDRFDIAMSGISIN--LER-- 88 (239)
T ss_dssp HTEEEEEECSEETTTEEECTTSCEESHHHHHHHHHHH-HTTCEEEEEECCTTTHHHHHHTTCCSEECSSCBCC--HHH--
T ss_pred CCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCC--HHH--
T ss_conf 9989999878989914899999887707999999988-64971378853668889999859965223336689--777--
Q ss_pred HHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 55304702301356685356786344641234553565555665442013578543200555876640354522100103
Q gi|254780342|r 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173 (309)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 173 (309)
........+.+......+.+... ...+.+.+++.. .+..++...++.. ...++.. +........+
T Consensus 89 ---~~~~~~s~p~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~i~~~~g~~~----~~~~~~~-~~~~~i~~~~ 153 (239)
T 3kbr_A 89 ---QRQAYFSIPYLRDGKTPITLCSE--EARFQTLEQIDQ-----PGVTAIVNPGGTN----EKFARAN-LKKARILVHP 153 (239)
T ss_dssp ---HTTCEECSCSEEECEEEEEEGGG--GGGGSSHHHHSS-----TTCEEEECTTSHH----HHHHHHH-CSSSEEEECC
T ss_pred ---HHHCCCCCCEEECCCEEEEEECC--CCCCCCHHHHHC-----CCCEEEECCCCHH----HHHHHHC-CCCCEEEEEC
T ss_conf ---43225674346425213552025--676565244433-----6870576567539----9999870-8763453302
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCHH
Q ss_conf 665201899999996599369994124223
Q gi|254780342|r 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPI 203 (309)
Q Consensus 174 ~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~ 203 (309)
... ++..++.+|+.+++..-.+...
T Consensus 154 ~~~-----~~l~~L~~grvD~~i~~~~~~~ 178 (239)
T 3kbr_A 154 DNV-----TIFQQIVDGKADLMMTDAIEAR 178 (239)
T ss_dssp CTT-----THHHHHHTTSCSEEEEEHHHHH
T ss_pred CHH-----HHHHHHHCCCCEEEEECHHHHH
T ss_conf 327-----6767863698319995489999
No 107
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus HB8} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=52.53 E-value=10 Score=16.50 Aligned_cols=54 Identities=7% Similarity=-0.128 Sum_probs=40.2
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCEEEEEE
Q ss_conf 837994258869999999999999610--698489985640578888514981399984
Q gi|254780342|r 26 TPVRFADTGWTDIAATTAMTSVILEEI--LGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82 (309)
Q Consensus 26 ~~I~ig~~~wte~~v~a~i~~~iLE~~--lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~ 82 (309)
++|+||.-.-+....+= -.+.+.. .+++.+++.+.-..+-+.+..|++|+.+-.
T Consensus 2 ~~~~ig~sp~~nd~~~f---~~l~~g~v~~~~~~~~~~~~p~~LN~~l~~g~~Dv~~iS 57 (272)
T 2czl_A 2 EALRLGFSPCPNDTFIF---YALVHGRVESPVPLEPVLEDVETLNRWALEGRLPLTKLS 57 (272)
T ss_dssp -CEEEEECSSHHHHHHH---HHHHTTSSCCSSCEEEEECCHHHHHHHHHTTCCSEEEEE
T ss_pred CEEEEEECCCCCHHHHH---HHHHCCCCCCCCCCEEEECCHHHHHHHHHCCCCCEEEHH
T ss_conf 45898855899708999---899809978998516853799999999984999886060
No 108
>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type transport system, PERI component, transport protein; HET: GDS; 1.85A {Haemophilus parasuis}
Probab=51.44 E-value=11 Score=16.39 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=18.9
Q ss_pred EEEEEE-CCHHHHHHHHHCCCCEEEEEE
Q ss_conf 489985-640578888514981399984
Q gi|254780342|r 56 KTNIKL-LAVPVTFRSLKNKGIDIFMGY 82 (309)
Q Consensus 56 ~Ve~~~-~~~~~~~~al~~G~iD~~~e~ 82 (309)
++.+.. .+....+.++.+|++|+....
T Consensus 215 ~i~~~~~~~~~~~~~~~~~G~~D~~~~~ 242 (522)
T 3m8u_A 215 RLIFEIVPDATARYAKLQAGACDLIDFP 242 (522)
T ss_dssp EEEEEECCCHHHHHHHHHHTSCSEESSC
T ss_pred CCEEEEECCHHHHHHHHHCCCCCEECCC
T ss_conf 5147980887999999985998653266
No 109
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide transport/peptide), peptide transport; 1.20A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A 1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A 1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A 1b7h_A ...
Probab=51.41 E-value=11 Score=16.39 Aligned_cols=26 Identities=8% Similarity=0.008 Sum_probs=17.8
Q ss_pred EEEEE-CCHHHHHHHHHCCCCEEEEEE
Q ss_conf 89985-640578888514981399984
Q gi|254780342|r 57 TNIKL-LAVPVTFRSLKNKGIDIFMGY 82 (309)
Q Consensus 57 Ve~~~-~~~~~~~~al~~G~iD~~~e~ 82 (309)
+.+.. .+....+.++.+|++|+....
T Consensus 221 i~~~~~~d~~~~~~al~~Ge~D~~~~~ 247 (517)
T 1jet_A 221 VTYLPISSEVTDVNRYRSGEIDMTYNN 247 (517)
T ss_dssp EEEECCCCHHHHHHHHHTTSCSBCCSC
T ss_pred CEEEEECCHHHHHHHHHCCCCCCCCCC
T ss_conf 315640568999999977996330466
No 110
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=51.18 E-value=11 Score=16.42 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=30.8
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHHH
Q ss_conf 3458837994258869999999999999610698489985--6405788885
Q gi|254780342|r 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSL 71 (309)
Q Consensus 22 ~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~--~~~~~~~~al 71 (309)
|+-.+|.+||+ -=+.++++.++-+||. .||+|.... +|.+.++.-+
T Consensus 128 pNptkplHVGH---lRsaiiGd~larlle~-~G~~V~r~~yvnD~G~Qi~~l 175 (629)
T 2zue_A 128 VNPTKPLHMGH---ARNAILGDVMARILRF-LGYEVEVQNYIDDLGIQFAQV 175 (629)
T ss_dssp CCTTSCCBHHH---HHHHHHHHHHHHHHHH-TTCEEEEEEEECTTSHHHHHH
T ss_pred CCCCCCCCCCH---HHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCHHHHHH
T ss_conf 98999865000---4747888999999997-699687988558875567898
No 111
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=49.23 E-value=12 Score=16.17 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECC-------------HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECC
Q ss_conf 9999999999961069848998564-------------057888851498139998404641356666553047023013
Q gi|254780342|r 39 AATTAMTSVILEEILGYKTNIKLLA-------------VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105 (309)
Q Consensus 39 ~v~a~i~~~iLE~~lGy~Ve~~~~~-------------~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~ 105 (309)
-+--.+++.+.++ +|++++++... -..++.++.+|++|+.+..+.-+ .+. . .....+.
T Consensus 34 G~~vDl~~~ia~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~t~t-~eR--~-----~~~~FS~ 104 (263)
T 1mqi_A 34 GYCVDLAAEIAKH-CGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTIT-LVR--E-----EVIDFSK 104 (263)
T ss_dssp SHHHHHHHHHHHH-HTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECSSCBCC-HHH--H-----TTEEECS
T ss_pred EEHHHHHHHHHHH-HCCCEEEEECCCCCCCEECCCCCCHHHHHHHHHHCCCCEEEECCEEC-HHH--H-----HHCCCCC
T ss_conf 8689999999998-59977999877876321313567778999865402328898754606-767--5-----2045457
Q ss_pred CCCCCEEEEEEEHHHHHCCCCCHHHHHH
Q ss_conf 5668535678634464123455356555
Q gi|254780342|r 106 NLQGAKYMLAVNDVGFALGIKSYQDIAK 133 (309)
Q Consensus 106 ~~~~~~~~~~v~~~~~~~~i~~~~dl~~ 133 (309)
.+......+.+.+. ..+.++.++.+
T Consensus 105 py~~~~~~~~~~~~---~~~~~~~dl~~ 129 (263)
T 1mqi_A 105 PFMSLGISIMIKKG---TPIESAEDLSK 129 (263)
T ss_dssp CSEEECEEEEEETT---CSCCSHHHHHT
T ss_pred CEECCCEEEEEECC---CCCCCHHHHHC
T ss_conf 64526528986315---53234777606
No 112
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=48.34 E-value=12 Score=16.08 Aligned_cols=58 Identities=14% Similarity=0.007 Sum_probs=41.1
Q ss_pred CCCEEEECCCCCH---------------HHHHHHHHHHHHHHCCCCEEEEEE------------CCHHHHHHHHHCCCCE
Q ss_conf 8837994258869---------------999999999999610698489985------------6405788885149813
Q gi|254780342|r 25 CTPVRFADTGWTD---------------IAATTAMTSVILEEILGYKTNIKL------------LAVPVTFRSLKNKGID 77 (309)
Q Consensus 25 ~~~I~ig~~~wte---------------~~v~a~i~~~iLE~~lGy~Ve~~~------------~~~~~~~~al~~G~iD 77 (309)
+.+++|++.+++= .-+--.++.++.++ ||++++++. ++-..+..++.+|++|
T Consensus 2 ~~~lrV~~~~~pP~~~~~~~~~g~~~~~~G~~vdl~~~ia~~-lg~~~e~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~D 80 (265)
T 2v3u_A 2 GVVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNY-LGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRAD 80 (265)
T ss_dssp CCEEEEEECCBTTTBEEECCSTTCCCEEESHHHHHHHHHHHH-HTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTSCS
T ss_pred CCEEEEEECCCCCCEEECCCCCCCCCCEEEEHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCEE
T ss_conf 968999985559977980677899997888099999999998-3996799984675314312688889987776068543
Q ss_pred EEEEEE
Q ss_conf 999840
Q gi|254780342|r 78 IFMGYW 83 (309)
Q Consensus 78 ~~~e~w 83 (309)
+.....
T Consensus 81 ~~~~~~ 86 (265)
T 2v3u_A 81 IGISAL 86 (265)
T ss_dssp EECSSC
T ss_pred EEECCC
T ss_conf 660446
No 113
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=47.91 E-value=11 Score=16.36 Aligned_cols=46 Identities=9% Similarity=-0.064 Sum_probs=32.8
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE--CCHHHHHH
Q ss_conf 583458837994258869999999999999610698489985--64057888
Q gi|254780342|r 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFR 69 (309)
Q Consensus 20 ~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~--~~~~~~~~ 69 (309)
++|+-.+|.+||+ -=+.+++..++-+||. +||+|.... ++.+.++.
T Consensus 110 ~SpNp~k~lHvGH---lRstiiGd~laril~~-~G~~V~r~nyigD~G~Qi~ 157 (592)
T 1iq0_A 110 TSVNPNKELHVGH---LRNIALGDAIARILAY-AGREVLVLNYIDDTGRQAA 157 (592)
T ss_dssp CCCCTTSCCBHHH---HHHHHHHHHHHHHHHH-TTEEEEEEEEECTTSHHHH
T ss_pred CCCCCCCCCCCHH---HHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCHHHH
T ss_conf 5898999864012---7878988999999970-7998768875288733537
No 114
>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2; solute-binding protein; 1.45A {Streptomyces clavuligerus} PDB: 2wok_A 2wop_A*
Probab=46.63 E-value=13 Score=15.91 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=17.8
Q ss_pred EEEEEE-CCHHHHHHHHHCCCCEEEEEEE
Q ss_conf 489985-6405788885149813999840
Q gi|254780342|r 56 KTNIKL-LAVPVTFRSLKNKGIDIFMGYW 83 (309)
Q Consensus 56 ~Ve~~~-~~~~~~~~al~~G~iD~~~e~w 83 (309)
.|++.. .+......++.+|++|+....-
T Consensus 248 ~i~~~~~~d~~~~~~al~~Ge~D~~~~~~ 276 (562)
T 2wol_A 248 RVELTIGLDVDVLDARLIAGEFDINLEGR 276 (562)
T ss_dssp EEEEEECCCHHHHHHHHHTTSSSEESSCC
T ss_pred EEEEEECCCHHHHHHHHHCCCCEEECCCC
T ss_conf 79986058758888777537720641567
No 115
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A
Probab=45.67 E-value=9.7 Score=16.67 Aligned_cols=42 Identities=17% Similarity=0.021 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEC----CCCCHHHHHHHHHHH
Q ss_conf 999999999863035834588379942----588699999999999
Q gi|254780342|r 6 AVCLFLTTFSISYARDADSCTPVRFAD----TGWTDIAATTAMTSV 47 (309)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~I~ig~----~~wte~~v~a~i~~~ 47 (309)
++++++.+.+.+.+..+...+++.||+ ..++|+++.+-..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~lIIaHRG~~~~~PENTl~Af~~A~ 55 (356)
T 1ydy_A 10 MAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAY 55 (356)
T ss_dssp -------------------CCCEEEETTTTTTTSSTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999985450221168993799788988999731899999999
No 116
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=42.70 E-value=15 Score=15.53 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99899999999985
Q gi|254780342|r 267 QDRQFVGRTMLRTH 280 (309)
Q Consensus 267 ~~~~~vA~~wL~~n 280 (309)
.+|.+||+.||..|
T Consensus 39 dnp~~~A~kFl~~n 52 (80)
T 2k89_A 39 DDPWLTAYNFLQKN 52 (80)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC
T ss_conf 99899999999981
No 117
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=38.78 E-value=17 Score=15.14 Aligned_cols=39 Identities=13% Similarity=0.264 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89989999999999845999899999999985999998754
Q gi|254780342|r 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289 (309)
Q Consensus 249 ~ls~~~~~~l~~~v~~~g~~~~~vA~~wL~~n~~~~~~Wl~ 289 (309)
++|.+.=.++...+ ..|++..+||+++ .=++.++..|++
T Consensus 22 ~~t~e~K~~iv~~~-e~G~s~~~vAre~-gi~~stl~~W~k 60 (87)
T 2elh_A 22 SLTPRDKIHAIQRI-HDGESKASVARDI-GVPESTLRGWCK 60 (87)
T ss_dssp SCCHHHHHHHHHHH-HHTCCHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHH-CCCHHHHHHHHH
T ss_conf 18999999999999-8799999999997-979989999999
No 118
>2p3y_A Hypothetical protein VPA0735; structural genomics, PSI-2, protein structure initiative; 1.80A {Vibrio parahaemolyticus rimd 2210633} SCOP: e.65.1.1
Probab=36.38 E-value=0.98 Score=23.16 Aligned_cols=17 Identities=12% Similarity=0.049 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 95799999999999863
Q gi|254780342|r 1 MYKILAVCLFLTTFSIS 17 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~ 17 (309)
|||.++++++.++++++
T Consensus 1 mkk~~l~~a~~~~~ls~ 17 (491)
T 2p3y_A 1 MKKRILAVAVTSMLLSA 17 (491)
T ss_dssp -----------------
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 91789999999997522
No 119
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=36.17 E-value=18 Score=14.87 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=34.0
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH----HCCCCEEEEEE
Q ss_conf 8379942588699999999999996106984899856405788885----14981399984
Q gi|254780342|r 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL----KNKGIDIFMGY 82 (309)
Q Consensus 26 ~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al----~~G~iD~~~e~ 82 (309)
+.|+|-+ |.+..++..|+.. .|+++|++|++..+++..+ .-+ .++..|++...
T Consensus 6 ~el~vYs--~~~~~~~~~li~~-Fek~tGIkV~~~~~~~~~~-~kl~ae~~~~~~DV~~~~ 62 (323)
T 1y9u_A 6 DEVSLYT--TREPKLIQPLLDA-FAKDSGIKVNTVFVKDGLL-ERVRAEGDKSPADVLMTV 62 (323)
T ss_dssp CEEEEEE--SSCGGGTHHHHHH-HHHHHCCEEEEEECSSCHH-HHHHHHGGGCCCCEEEEE
T ss_pred CEEEEEE--CCCHHHHHHHHHH-HHHHHCCEEEEEECCHHHH-HHHHHCCCCCCCCEEEEC
T ss_conf 8369997--9887689999999-9986698799997988999-999974589998789978
No 120
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidases, MCSG, PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis MC58}
Probab=35.32 E-value=18 Score=15.00 Aligned_cols=71 Identities=8% Similarity=0.056 Sum_probs=46.9
Q ss_pred CHHHHHHHHH-CC--CC-HHHHHHHHHHHHHCCCCHHHH----HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 8899999874-08--99-899999999998459998999----9999998599999875475456771379999987449
Q gi|254780342|r 238 CPNISRLLKN-IK--FS-VALENEMMKLILNNKQDRQFV----GRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309 (309)
Q Consensus 238 ~P~~~~~L~~-~~--ls-~~~~~~l~~~v~~~g~~~~~v----A~~wL~~n~~~~~~Wl~~~~~~~~~~~~~~~~~~~~~ 309 (309)
.+++..+..+ +. -+ |+.+++|...+..+....+++ -.+| ++++-.+++|++-..+....+..+.||+-+++
T Consensus 691 ~~~~~~~a~~q~~~A~nMTd~~aAL~aL~~~~~~~r~~~l~~Fy~~w-k~~~lv~dkWf~~qa~~~~~~~~~~v~~L~~h 769 (867)
T 2gtq_A 691 PAHIETVAEKYGEMAQNMTHEWGILSAVNGNESDTRNRLLAQFADKF-SDDALVMDKYFALVGSSRRSDTLQQVRTALQH 769 (867)
T ss_dssp TTHHHHHHHTHHHHCSSHHHHHHHHHHHTTCCSHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHCCSTTHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCC
T ss_conf 56799999999765888889999999987179579999999999986-79951567778987348884889999998549
No 121
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=34.75 E-value=19 Score=14.73 Aligned_cols=66 Identities=9% Similarity=0.022 Sum_probs=46.6
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHCCCCEEEE-EEECCCCHHH
Q ss_conf 588379942588699999999999996106984899856--405788885149813999-8404641356
Q gi|254780342|r 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPVTFRSLKNKGIDIFM-GYWYPSLEKF 90 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~--~~~~~~~al~~G~iD~~~-e~w~p~~~~~ 90 (309)
.+++|.++...-....+-..|++.+|+.. ||+|..--. ...-+.++...-+.|+.. +...+.....
T Consensus 2 ~k~kVvi~~~~~D~H~lG~~~va~~l~~~-G~~V~~LG~~~p~e~iv~~~~~~~~d~V~iS~~~~~~~~~ 70 (137)
T 1ccw_A 2 EKKTIVLGVIGSDCHAVGNKILDHAFTNA-GFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEID 70 (137)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHHHHT-TCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 99879999469874589999999999987-9879977866699999999998399878876113445577
No 122
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=32.46 E-value=11 Score=16.42 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 9579999999999986
Q gi|254780342|r 1 MYKILAVCLFLTTFSI 16 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~ 16 (309)
|||++++++++++++.
T Consensus 1 mkk~l~~~~~~~~~~~ 16 (130)
T 2a3m_A 1 MRKSLFAVMVLALVAA 16 (130)
T ss_dssp ----------------
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 9049999999999999
No 123
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=32.35 E-value=21 Score=14.48 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=35.3
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 58837994258869999999999999610698489985640578888514
Q gi|254780342|r 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~ 73 (309)
.++||.||...|.++.-+-.-++.||+. +.-.-++..-+...+...|..
T Consensus 3 ~akPV~lG~~~F~s~~~~~~~~r~iL~~-y~~g~~L~~~d~~~l~~lL~~ 51 (104)
T 2k0m_A 3 KAQPIEIAGHEFARKADALAFMKVMLNR-YRPGDIVSTVDGAFLVEALKR 51 (104)
T ss_dssp CCCCEEETTEEESSHHHHHHHHHHHHHH-SCTTEECCHHHHHHHHHHHHT
T ss_pred CCCCEEECCEECCCHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHH
T ss_conf 8888688998228999999999999985-899698688899999999986
No 124
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=32.22 E-value=21 Score=14.47 Aligned_cols=26 Identities=4% Similarity=-0.095 Sum_probs=18.2
Q ss_pred EEEEEE-CCHHHHHHHHHCCCCEEEEE
Q ss_conf 489985-64057888851498139998
Q gi|254780342|r 56 KTNIKL-LAVPVTFRSLKNKGIDIFMG 81 (309)
Q Consensus 56 ~Ve~~~-~~~~~~~~al~~G~iD~~~e 81 (309)
++.+.. .+......++.+|++|+...
T Consensus 214 ~i~~~~~~d~~~~~~~~~~g~~D~~~~ 240 (509)
T 1uqw_A 214 SITWRPVADNNTRAAMLQTGEAQFAFP 240 (509)
T ss_dssp EEEEEECCCHHHHHHHHHHTSCSEECS
T ss_pred EEEEEECCCHHHHHHHHHCCCCEEECC
T ss_conf 599998089899999875587225305
No 125
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: LYS; 2.62A {Wolinella succinogenes}
Probab=30.22 E-value=23 Score=14.25 Aligned_cols=189 Identities=13% Similarity=0.062 Sum_probs=90.3
Q ss_pred CCCEEEEC-CCCC-------HH---HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHH
Q ss_conf 88379942-5886-------99---9999999999961069848998564057888851498139998404641356666
Q gi|254780342|r 25 CTPVRFAD-TGWT-------DI---AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93 (309)
Q Consensus 25 ~~~I~ig~-~~wt-------e~---~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~ 93 (309)
..+|+||. .+|+ .+ -+.-.++..+.+ .+|++++++..........+..|.+|+.......+. ...
T Consensus 4 rg~lrvgv~~~~pP~~~~d~~g~~~G~~~Dl~~~i~~-~lg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~r~-- 79 (245)
T 3k4u_A 4 RGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAK-AMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQ-ERN-- 79 (245)
T ss_dssp CSEEEEEECTTSTTTCEEETTTEEESHHHHHHHHHHH-HHTCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCH-HHH--
T ss_pred CCEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHH-HHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCH-HHH--
T ss_conf 8789999828988936899999888729999999999-949966997337088899986699778986785687-777--
Q ss_pred HHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 55304702301356685356786344641234553565555665442013578543200555876640354522100103
Q gi|254780342|r 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173 (309)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 173 (309)
..+....+.+. ....+.+.... .....++.++.. +...++...+. .....++...... ......
T Consensus 80 ----~~~~~s~p~~~-~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~-~i~~~~ 143 (245)
T 3k4u_A 80 ----LRVNFVEPYIV-VGQSLLVKKGL-EKGVKSYKDLDK-----PELTLVTKFGV----SAEYAAKRLFKNA-KLKTYD 143 (245)
T ss_dssp ----TTSEECSCSEE-ECEEEEEETTT-TTTCCSGGGGCC-----SSCEEEEETTS----HHHHHHHHHCSSS-EEEEES
T ss_pred ----HHCCCCCCEEC-CCCCCHHCCCC-CCCCCCHHHHCC-----CCCCCCCCCCC----HHHHHHHHHCCCC-EEEEEE
T ss_conf ----53346786120-44110001465-444678778514-----55421347772----3789999737786-289984
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCHH--HHC---CCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHH
Q ss_conf 665201899999996599369994124223--201---58514007865467786583544277778748899999874
Q gi|254780342|r 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPI--NSD---LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247 (309)
Q Consensus 174 ~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~--~~~---~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~ 247 (309)
+ ..+...++.+|+.+++.+..+... +.. ..++.+..|- .......++++ .+|++.+.+++
T Consensus 144 -~----~~~~l~~L~~GrvD~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~k----~~~~l~~~in~ 208 (245)
T 3k4u_A 144 -T----EAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSL-----TYEPLGWAIKK----GDPDFLNWLNH 208 (245)
T ss_dssp -S----HHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCC-----SCEEECCEECT----TCHHHHHHHHH
T ss_pred -C----CHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCEEECCC-----CCCEEEEEEEC----CCHHHHHHHHH
T ss_conf -2----178999997799659997327777999864876642122147-----77618999969----99999999999
No 126
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=30.04 E-value=23 Score=14.23 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=60.1
Q ss_pred HHCCCCCCCCCEEEEC-CCCCH---HHHHHHHHHHHHHHCCCCEEEEEEC--CHH----HHHHHHHCCCC-EEEEEE--E
Q ss_conf 3035834588379942-58869---9999999999996106984899856--405----78888514981-399984--0
Q gi|254780342|r 17 SYARDADSCTPVRFAD-TGWTD---IAATTAMTSVILEEILGYKTNIKLL--AVP----VTFRSLKNKGI-DIFMGY--W 83 (309)
Q Consensus 17 ~~~~~~~~~~~I~ig~-~~wte---~~v~a~i~~~iLE~~lGy~Ve~~~~--~~~----~~~~al~~G~i-D~~~e~--w 83 (309)
+......++++|+|-. ..|++ ...+-+|++..-+++-|++|+++.. +.. -+-.++.+|+. |++.-. |
T Consensus 5 g~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~i~~F~k~~p~i~V~~~~~~~~~~d~~~kl~~~~~ag~~pDi~~~~~~~ 84 (412)
T 2z8f_A 5 GDTKTTDDGGVVNITYMHRLPDSEGMTLVNDIVAKWNKQHPDIQVKATKFDGKASDMIKKLETDVKSGEAPDLAQVGYAE 84 (412)
T ss_dssp ------CCCSCEEEEEEECCCCCTTSCCHHHHHHHHHHHCTTEEEEEEECSSCGGGHHHHHHHHHHHTCCCSEEEEEGGG
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECHHH
T ss_conf 88887789998899998568994168999999999998883928999982797789999999998679988699989188
Q ss_pred CCC---------CHHHHHHHH------------HCCCEEEECCCCCCCEEEEEEEHHH-HHCCC----CCHHHHHHHHHH
Q ss_conf 464---------135666655------------3047023013566853567863446-41234----553565555665
Q gi|254780342|r 84 YPS---------LEKFIAPYL------------EEGSIKLVAENLQGAKYMLAVNDVG-FALGI----KSYQDIAKYKKE 137 (309)
Q Consensus 84 ~p~---------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~i----~~~~dl~~~~~~ 137 (309)
.+. ...+..+.. .+|. ..+........++++.+.. .+.++ ++|.++.+....
T Consensus 85 ~~~~~~~g~l~dL~~~~~~~~~~~~~~~~~~~~~dGk--~y~iP~~~~~~~~~ynkd~~~~~G~~~~P~Twde~~~~~~~ 162 (412)
T 2z8f_A 85 LPEVFTKGLLQDVTQYAEQYKNDFASGPYSLVQVGGK--AYGLPQDTGPLVYFYNKAEFEKLGITEIPQTADEFIAAAKT 162 (412)
T ss_dssp HHHHHHTTCBCCCHHHHHHHGGGBCHHHHHTTEETTE--ECEEECBCCBEEEEEEHHHHHHTTCCSCCCBHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHEEECCE--EEEEEEECCCCEEEEECHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 9999987995538154666576457998975089999--99999743760699971137765887898739999999999
Q ss_pred HHH
Q ss_conf 442
Q gi|254780342|r 138 LGA 140 (309)
Q Consensus 138 ~~~ 140 (309)
++.
T Consensus 163 ~~~ 165 (412)
T 2z8f_A 163 AAA 165 (412)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 985
No 127
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=29.43 E-value=24 Score=14.16 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=39.9
Q ss_pred CCCCEEEECCCCCH-----------------HHHHHHHHHHHHHHCCCCEEEEEEC-------------CHHHHHHHHHC
Q ss_conf 58837994258869-----------------9999999999996106984899856-------------40578888514
Q gi|254780342|r 24 SCTPVRFADTGWTD-----------------IAATTAMTSVILEEILGYKTNIKLL-------------AVPVTFRSLKN 73 (309)
Q Consensus 24 ~~~~I~ig~~~wte-----------------~~v~a~i~~~iLE~~lGy~Ve~~~~-------------~~~~~~~al~~ 73 (309)
+.++++|++..|+= .-+--.|++++-+ .||+++++... +-..+..+|.+
T Consensus 11 ~~~t~~v~t~~~pP~~~~~~~~~~~~~n~~~~Gf~vDl~~~ia~-~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 89 (312)
T 1yae_A 11 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELST-ILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELID 89 (312)
T ss_dssp CSCEEEEEECCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHH-HHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHHHT
T ss_pred CCCEEEEEECCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 68889999824599678816998767898668878999999999-82997799990577545323367888998743224
Q ss_pred CCCEEEEEEE
Q ss_conf 9813999840
Q gi|254780342|r 74 KGIDIFMGYW 83 (309)
Q Consensus 74 G~iD~~~e~w 83 (309)
|++|+.....
T Consensus 90 g~~Di~i~~~ 99 (312)
T 1yae_A 90 HKADLAVAPL 99 (312)
T ss_dssp TSCSEECSSC
T ss_pred CEEEEEEECC
T ss_conf 4065998645
No 128
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=29.27 E-value=9.3 Score=16.79 Aligned_cols=22 Identities=23% Similarity=0.009 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9579999999999986303583
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDA 22 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~ 22 (309)
|||+++.+.+++++++++.+.+
T Consensus 1 Mkk~~~~l~~~~l~~~~~~a~a 22 (191)
T 1y0g_A 1 MKKSLLGLTFASLMFSAGSAVA 22 (191)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHHHHHHHHCCCCC
T ss_conf 9336999999999976022036
No 129
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=28.31 E-value=24 Score=14.15 Aligned_cols=49 Identities=20% Similarity=0.092 Sum_probs=35.5
Q ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHH
Q ss_conf 99999961069848998564057888851498139998404641356666
Q gi|254780342|r 44 MTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93 (309)
Q Consensus 44 i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~ 93 (309)
++.++.|+. ||++-++=|..-...-+....|||+.++...+.....+.+
T Consensus 1 ~i~~~~~~~-g~~~ylVGG~VRD~llg~~~~DiD~~~~~~~~~~~~~~~~ 49 (390)
T 1vfg_A 1 MVGQIAKEM-GLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELAR 49 (390)
T ss_dssp CHHHHHHHT-TCCEEEETHHHHHHHTTCCCSEEEEEESSCHHHHHHHHHH
T ss_pred CHHHHHHHC-CCEEEEECHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHH
T ss_conf 957999976-9969997309999877997989899970987999999987
No 130
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=27.42 E-value=5.7 Score=18.20 Aligned_cols=33 Identities=30% Similarity=0.216 Sum_probs=25.6
Q ss_pred EEECCCCCHHHHHHHHHHHHHHH---CCCCEEEEEE
Q ss_conf 99425886999999999999961---0698489985
Q gi|254780342|r 29 RFADTGWTDIAATTAMTSVILEE---ILGYKTNIKL 61 (309)
Q Consensus 29 ~ig~~~wte~~v~a~i~~~iLE~---~lGy~Ve~~~ 61 (309)
-++...-+.+.+.++|.++.||+ .+||++.+-.
T Consensus 8 ivaVTaCptGIAHTymAAeaLe~aA~~~G~~ikVEt 43 (111)
T 2kyr_A 8 LIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIET 43 (111)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHHHTSSEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999952885087899999999999998799699996
No 131
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=26.35 E-value=27 Score=13.82 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=20.7
Q ss_pred HHHCHHHHHHHHHCC--CCHHHHHHHH-HHHHHCCCC
Q ss_conf 874889999987408--9989999999-999845999
Q gi|254780342|r 235 LDKCPNISRLLKNIK--FSVALENEMM-KLILNNKQD 268 (309)
Q Consensus 235 ~~~~P~~~~~L~~~~--ls~~~~~~l~-~~v~~~g~~ 268 (309)
.+++|++++||+++- -.+..+++.. ..++.-|.+
T Consensus 33 kedypqifdflenvprgtktahirealrryieeigen 69 (70)
T 2q2k_A 33 KEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGEN 69 (70)
T ss_dssp TTTSHHHHHHHTTSCTTCHHHHHHHHHHHHHHHCC--
T ss_pred HHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 1004699999973887763089999999999985569
No 132
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, alternative splicing, calcium, cell junction, coiled coil, glycoprotein, ION transport; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=25.98 E-value=27 Score=13.77 Aligned_cols=41 Identities=5% Similarity=0.058 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEEC-----------CHHHHHHHHHCCCCEEEEEE
Q ss_conf 9999999996106984899856-----------40578888514981399984
Q gi|254780342|r 41 TTAMTSVILEEILGYKTNIKLL-----------AVPVTFRSLKNKGIDIFMGY 82 (309)
Q Consensus 41 ~a~i~~~iLE~~lGy~Ve~~~~-----------~~~~~~~al~~G~iD~~~e~ 82 (309)
--.++..+-+ .||+++++... .-+.+..+|.+|++|+....
T Consensus 72 ~iDL~~~ia~-~lg~~~e~~~v~d~~~~~~~~~~w~~~i~~l~~g~~Di~i~~ 123 (294)
T 2rc8_A 72 CIDLLEQLAE-DMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTS 123 (294)
T ss_dssp HHHHHHHHHH-HHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSS
T ss_pred HHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEC
T ss_conf 8999999999-819967999806886345367888999999977996599530
No 133
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport, transport protein; 1.55A {Bacillus subtilis} SCOP: c.94.1.1
Probab=25.94 E-value=27 Score=13.77 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=15.5
Q ss_pred EEEEEC-CHHHHHHHHHCCCCEEEEE
Q ss_conf 899856-4057888851498139998
Q gi|254780342|r 57 TNIKLL-AVPVTFRSLKNKGIDIFMG 81 (309)
Q Consensus 57 Ve~~~~-~~~~~~~al~~G~iD~~~e 81 (309)
|.+... +....+.++.+|++|+...
T Consensus 217 i~~~~~~~~~~~~~~~~~g~~D~~~~ 242 (520)
T 1xoc_A 217 VTYKVIPDANAAEAQLQAGDINFFNV 242 (520)
T ss_dssp EEEEECSCHHHHHHHHHHTSCCBEEC
T ss_pred EEEEEECCHHHHHHHHHCCCCCCCCC
T ss_conf 34588277589999997589742347
No 134
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, RHH motif, structural genomics; 1.49A {Mycobacterium tuberculosis}
Probab=25.54 E-value=28 Score=13.72 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=30.0
Q ss_pred HHCHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 427777874889999987408998999999999984599989999999
Q gi|254780342|r 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276 (309)
Q Consensus 229 vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l~~~v~~~g~~~~~vA~~w 276 (309)
+.|++|+++|-+-...=..-+.|.+++..+..++..-| +|+..++.|
T Consensus 26 lSRnE~L~r~le~~a~~~~~~vTaadl~R~a~a~~dLg-dPevM~~AW 72 (73)
T 3h87_C 26 LSRTEYIRRRLAQDAQTARVTVTAADLRRLRGAVAGLG-DPELMRQAW 72 (73)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCCHHHHHHHHHHSGGGG-CHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_conf 76889999998876227788246999999999986048-879999861
No 135
>3mr8_P 30S ribosomal protein S16; ribosome, termination, RF1, amber, STOP UAG; 3.62A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* 1i95_P* 1i96_P* 1i97_P* 1ibk_P* ...
Probab=25.30 E-value=19 Score=14.79 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=10.0
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 5999998754754567713799999874
Q gi|254780342|r 280 HPDLLKNWLIGVTTFDGQDPSRQLERFM 307 (309)
Q Consensus 280 n~~~~~~Wl~~~~~~~~~~~~~~~~~~~ 307 (309)
|.+.+..||+ .|+++++.|++.+
T Consensus 52 ~~eRi~~WL~-----~GAqpS~~V~~Ll 74 (83)
T 3mr8_P 52 DVERARYWLS-----VGAQPTDTARRLL 74 (83)
T ss_dssp CHHHHHHHHH-----TCCCCCHHHHHHH
T ss_pred CHHHHHHHHH-----CCCCCCHHHHHHH
T ss_conf 6999999998-----7890678999999
No 136
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=23.58 E-value=30 Score=13.48 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEE-EEEEECCCCHHH
Q ss_conf 99999999999961069848998564057888851498139-998404641356
Q gi|254780342|r 38 IAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI-FMGYWYPSLEKF 90 (309)
Q Consensus 38 ~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~-~~e~w~p~~~~~ 90 (309)
......+++.+|+.. ||+|.. ..+.....+.+.+...|+ .++...|.....
T Consensus 12 d~~~~~~l~~~L~~~-g~~v~~-a~~g~~al~~l~~~~~dlvl~D~~mP~~~G~ 63 (136)
T 1mvo_A 12 EESIVTLLQYNLERS-GYDVIT-ASDGEEALKKAETEKPDLIVLDVMLPKLDGI 63 (136)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEE-ESSHHHHHHHHHHHCCSEEEEESSCSSSCHH
T ss_pred CHHHHHHHHHHHHHC-CCEEEE-ECCHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 999999999999988-999999-8999999999884599899826999999889
No 137
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, cytoplasm, metal-binding, metalloprotease, protease, zinc, hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A*
Probab=23.54 E-value=30 Score=13.48 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHH---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 9989999999999845999899999999---9859999987547545677137999998744
Q gi|254780342|r 250 FSVALENEMMKLILNNKQDRQFVGRTML---RTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308 (309)
Q Consensus 250 ls~~~~~~l~~~v~~~g~~~~~vA~~wL---~~n~~~~~~Wl~~~~~~~~~~~~~~~~~~~~ 308 (309)
-.++.+.+|......+ ...++-++|. ++|+-.+++|++-..+...-|..+.|++-++
T Consensus 730 nmTd~l~AL~~l~~~~--~~~~~l~~fy~~w~~~~lv~dkWf~~qa~~~~~~~~~~v~~L~~ 789 (889)
T 3ebh_A 730 YPSNWLTSLSVSAYFD--KYFELYDKTYKLSKDDELLLQEWLKTVSRSDRKDIYEILKKLEN 789 (889)
T ss_dssp CHHHHHHHHHHGGGST--THHHHHHHHHHHHTTSHHHHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCC--CHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHC
T ss_conf 7899999999760787--39999999999867996789999999737898689999999856
No 138
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=23.19 E-value=31 Score=13.43 Aligned_cols=58 Identities=12% Similarity=0.034 Sum_probs=35.7
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHHHHCCCC-EEEEE
Q ss_conf 345883799425886999999999999961069848998564057----8888514981-39998
Q gi|254780342|r 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPV----TFRSLKNKGI-DIFMG 81 (309)
Q Consensus 22 ~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~----~~~al~~G~i-D~~~e 81 (309)
..+.++|++-. +........++++.. |+..|++|++...+... +-.++.+|+. |++.-
T Consensus 31 ~~~~~~it~~~-~~~~~~~~~~~~~~F-ek~~gi~V~~~~~~~~~~~~kl~~~~~sg~~pDi~~~ 93 (416)
T 2xd3_A 31 SSEVKELTVYV-DEGYKSYIEEVAKAY-EKEAGVKVTLKTGDALGGLDKLSLDNQNGNVPDVMMA 93 (416)
T ss_dssp -----CCEEEE-CGGGHHHHHHHHHHH-HHHSSCCCEEEECCHHHHHHTHHHHHHHSCCCSEEEE
T ss_pred CCCCEEEEEEE-CCCCHHHHHHHHHHH-HHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 88872899997-898259999999998-7541957999979937999999999867998839998
No 139
>2b6d_A Lactotransferrin; complex, drugs, lactoferrin; HET: NAG MAN BMA DIF; 1.40A {Bos taurus} SCOP: c.94.1.2 PDB: 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* 2ds9_A* 2dsf_A* 2dvc_A* 2dwa_A* 2dwh_A* 2dwi_A* 2dwj_A* 2dxr_A* 2dxy_A* 2dyx_A* 2e0s_A* 2e1s_A* 2fa7_A* 2g5j_A* 2g93_A* 2h4i_A* ...
Probab=22.87 E-value=31 Score=13.40 Aligned_cols=34 Identities=6% Similarity=-0.115 Sum_probs=27.2
Q ss_pred HHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEE
Q ss_conf 996106984899856-4057888851498139998
Q gi|254780342|r 48 ILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMG 81 (309)
Q Consensus 48 iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e 81 (309)
.|.+.+|++|+.+.+ ++..+.++|++|+.|+..=
T Consensus 19 ~ls~~~~~~v~Cv~~~s~~~Ci~~I~~g~ADi~~l 53 (345)
T 2b6d_A 19 QWSQQSGQNVTCATASTTDDCIVLVLKGEADALNL 53 (345)
T ss_dssp HHHHHTTTSEEEEEESSHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEE
T ss_conf 99996399869996799999999997699878997
No 140
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B
Probab=22.82 E-value=22 Score=14.38 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHHHCC-----CCCCCCC--EEEEC-CCCCHHHHHH
Q ss_conf 95799999999999863035-----8345883--79942-5886999999
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYAR-----DADSCTP--VRFAD-TGWTDIAATT 42 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~-----~~~~~~~--I~ig~-~~wte~~v~a 42 (309)
|||++.+++++++++|...+ .+..++| |.+-. -+..-+.+.+
T Consensus 3 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~p~NIi~il~DD~g~~dl~~ 52 (375)
T 2w5v_A 3 LKKIVFTLIALGLFSCKTTSVLVKNEPQLKTPKNVILLISDGAGLSQISS 52 (375)
T ss_dssp ---------------------------CCCCCSEEEEEEETTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHH
T ss_conf 15999999999999986403444227766899879999858999899998
No 141
>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=22.18 E-value=32 Score=13.31 Aligned_cols=71 Identities=20% Similarity=0.113 Sum_probs=45.5
Q ss_pred HCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEE-EEEEECCCCHHHH
Q ss_conf 0358345883799425886999999999999961069848998564057888851498139-9984046413566
Q gi|254780342|r 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI-FMGYWYPSLEKFI 91 (309)
Q Consensus 18 ~~~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~-~~e~w~p~~~~~~ 91 (309)
.++.+....|+||-..+ ...+...++..+|+.. ||+|--...+..-..+.+.....|+ ..+...|....+-
T Consensus 4 p~~~~~~~~P~rILIVD--Dd~~~r~~l~~~L~~~-G~~vv~~a~~g~eal~~~~~~~pDlillDi~MP~mdGle 75 (205)
T 1s8n_A 4 PTTDADAAVPRRVLIAE--DEALIRMDLAEMLREE-GYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGID 75 (205)
T ss_dssp -------CCCCEEEEEC--SSHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHH
T ss_pred CCCCCCCCCCCEEEEEC--CCHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 99999888788899982--9899999999999986-997999989999999999837999999964045860799
No 142
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=21.57 E-value=17 Score=15.09 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 957999999999998
Q gi|254780342|r 1 MYKILAVCLFLTTFS 15 (309)
Q Consensus 1 mkk~~~~~~~~~~~~ 15 (309)
|||+++.+++++.+.
T Consensus 1 Mk~~~~~~~~~l~~~ 15 (103)
T 2zzs_A 1 MKRVMIGAVAALTML 15 (103)
T ss_dssp ---------------
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 927999999999998
No 143
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_A 1v29_A
Probab=20.92 E-value=34 Score=13.14 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=10.9
Q ss_pred HHCCCCCCCCCCCCHHHHH
Q ss_conf 4201357854320055587
Q gi|254780342|r 139 GAKIYGIEPGNEGNQRILD 157 (309)
Q Consensus 139 ~~~~~g~~~~~~~~~~~~~ 157 (309)
...++|.+|.|........
T Consensus 123 P~~~LGlpP~Wykd~ayR~ 141 (216)
T 3hht_A 123 PWPLLGLPPSWYKEPAYRA 141 (216)
T ss_dssp CHHHHCSCCGGGGSHHHHH
T ss_pred CHHHCCCCCHHHCCHHHHH
T ss_conf 6664189974534868999
No 144
>2r48_A Phosphotransferase system (PTS) mannose-specific enzyme iibca component; PTS system, fructose specific IIB subunit, PFAM02379, PSI-2; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=20.43 E-value=7.7 Score=17.31 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=24.0
Q ss_pred EECCCCCHHHHHHHHHHHHHHH---CCCCEEEEE
Q ss_conf 9425886999999999999961---069848998
Q gi|254780342|r 30 FADTGWTDIAATTAMTSVILEE---ILGYKTNIK 60 (309)
Q Consensus 30 ig~~~wte~~v~a~i~~~iLE~---~lGy~Ve~~ 60 (309)
+|...-+.+.+.++|.++.||+ .+|+++++-
T Consensus 6 vaVTaCptGiAHTymAAeaLe~aA~~~g~~ikVE 39 (106)
T 2r48_A 6 LAITSCPNGIAHTYMAAENLQKAADRLGVSIKVE 39 (106)
T ss_dssp EEEEECSSCSHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9995598528799999999999999879969999
No 145
>2r4q_A Phosphotransferase system (PTS) fructose- specific enzyme iiabc component; fructose specific IIB subunit, PFAM02379, structural genomics; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=20.36 E-value=5 Score=18.54 Aligned_cols=32 Identities=28% Similarity=0.240 Sum_probs=23.7
Q ss_pred EECCCCCHHHHHHHHHHHHHHH---CCCCEEEEEE
Q ss_conf 9425886999999999999961---0698489985
Q gi|254780342|r 30 FADTGWTDIAATTAMTSVILEE---ILGYKTNIKL 61 (309)
Q Consensus 30 ig~~~wte~~v~a~i~~~iLE~---~lGy~Ve~~~ 61 (309)
++...-+.+.+.++|.++.||+ .+||++.+-.
T Consensus 6 vaVTaCptGiAHTymAAeaLekaA~~~G~~ikVEt 40 (106)
T 2r4q_A 6 LAVTACPTGIAHTFMAADALKEKAKELGVEIKVET 40 (106)
T ss_dssp EEEEECSCC--CHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99964897186899999999999998799599994
Done!