RPSBLAST alignment of GI: 254780342 and protein with PDBid: 3o66
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} Length = 282
Score = 86.2 bits (212), Expect = 8e-18
Identities = 26/280 (9%), Positives = 69/280 (24%), Gaps = 27/280 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL----AVPVTFRSLKNKGID 77
+ V+ ++ + M +++E K L+ + + +L N +
Sbjct: 5 KSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDAN 64
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA----------KYMLAVNDVGFAL---- 123
I + + K Q N F +
Sbjct: 65 ISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKET 124
Query: 124 -GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ ++ K G++ + ++
Sbjct: 125 AKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFD----FGTVRPMQIGL 180
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ V L + + ++ L ++ F + V ++ L + P +
Sbjct: 181 VYDALNTEKLDVALGYSTDGRIAAYDLKVLKDDKQF--FPPYAASAVATNELLRQHPELK 238
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + K S + + ++ V L+ H
Sbjct: 239 TTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 278