BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780342|ref|YP_003064755.1| substrate-binding region of
ABC-type glycine betaine transport system [Candidatus Liberibacter
asiaticus str. psy62]
         (309 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780342|ref|YP_003064755.1| substrate-binding region of ABC-type glycine betaine transport
           system [Candidatus Liberibacter asiaticus str. psy62]
          Length = 309

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/309 (100%), Positives = 309/309 (100%)

Query: 1   MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
           MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK
Sbjct: 1   MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60

Query: 61  LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
           LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG
Sbjct: 61  LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120

Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
           FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF
Sbjct: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180

Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
           SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN
Sbjct: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240

Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
           ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS
Sbjct: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300

Query: 301 RQLERFMNN 309
           RQLERFMNN
Sbjct: 301 RQLERFMNN 309


>gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 28.9 bits (63), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
           +LASF ++  D R ++ +   S +   + S +   YL GG E++G
Sbjct: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136


>gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 392

 Score = 24.3 bits (51), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
           + D++F        H D +KN + G T  DG
Sbjct: 67  ETDKRFYSHIDCPGHADYVKNMITGATQADG 97


>gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 392

 Score = 24.3 bits (51), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
           + D++F        H D +KN + G T  DG
Sbjct: 67  ETDKRFYSHIDCPGHADYVKNMITGATQADG 97


>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 833

 Score = 23.9 bits (50), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 56  KTNIKLLAVPVTFRSLKNKGIDIFMG-YWYPSLEKFIA 92
           + N+KL    ++FR L +K I+  +G   Y S+  FI+
Sbjct: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782


>gi|255764474|ref|YP_003064854.2| glycosyl transferase group 1 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 352

 Score = 23.9 bits (50), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 83  WYPSLEKFIAPYLEEG 98
           WY +L  F+AP L EG
Sbjct: 242 WYRALNIFVAPPLYEG 257


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.138    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,078
Number of Sequences: 1233
Number of extensions: 8298
Number of successful extensions: 21
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 7
length of query: 309
length of database: 328,796
effective HSP length: 74
effective length of query: 235
effective length of database: 237,554
effective search space: 55825190
effective search space used: 55825190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)