HHsearch alignment for GI: 254780343 and conserved domain: TIGR01297
>TIGR01297 CDF cation diffusion facilitator family transporter; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells , , however others are implicated in ion uptake . The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016020 membrane.
Probab=100.00 E-value=2.2e-42 Score=287.73 Aligned_cols=279 Identities=29% Similarity=0.508 Sum_probs=261.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999972799999999999999999999999999548998668724146779999896889
Q gi|254780343|r 10 IRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLL 89 (311)
Q Consensus 10 ~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~ 89 (311)
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~d~~h~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~e~~~~~~~~~~ 81 (294)
T TIGR01297 2 KRALLISLLLNLLLLLVELVGGLLSGSLALLADALHSLSDVLALLIALLALRLSEKPPDERHPFGYGRAEVLAALLNGLF 81 (294)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 31688899999999999999998730478888777889999999999999987415775556653268999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHCCC--CHHHHHHHHHHHHHHHHHH
Q ss_conf 999889999999999863---0022322102678888720124679999987--41033--0577875998665378878
Q gi|254780343|r 90 MTNIALIILYESWHNMSH---SPSNDFSIMGLFIGFMANIISLFWGKWLIYS--GEKNH--SAAFKANGQHFVADVVMSA 162 (311)
Q Consensus 90 l~~~~~~i~~es~~~l~~---~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~--~~~~~--s~~l~a~~~~~~~D~~~s~ 162 (311)
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~ 159 (294)
T TIGR01297 82 LVVVALFILYEAIERLLNGHAPE-EIDG-LALIVAGLGLLVNLILALLLLRGHGGHKLGHGSLNLRAAALHVLGDLLGSL 159 (294)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999875002441-1357-899999999999999999998642022110014789999999888889999
Q ss_pred HHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 888877653027--72246876689999999999899999989974044555-145899999864158883115157647
Q gi|254780343|r 163 GVLCGLLLVLIT--EYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVK-PEHLEKIKNIIALNASGSIGIHDLKIR 239 (311)
Q Consensus 163 ~vii~~~~~~~~--~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~-~~~~~~i~~~i~~~~~~V~~v~~l~~~ 239 (311)
T Consensus 160 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (294)
T TIGR01297 160 GVLIGALLIYFGPFGWTWADPIAALLISLLILYTAFRLLKESINVLLDGAPPELLDLIEVKKVLLLSIPGVKGVHDLHIW 239 (294)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHEEE
T ss_conf 99999999874025503777899999999999989999999999985103530356999999997515641110221023
Q ss_pred EECC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC--CCCEEEEEEECCC
Q ss_conf 5579-0799999998879998999999999999999877--9868999960588
Q gi|254780343|r 240 QAGA-TFFINFHLVVDSHMIVLDAHKICNKLERSLEENI--GQAIITIHIEPAN 290 (311)
Q Consensus 240 ~~G~-~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~--~~~~v~ih~ep~~ 290 (311)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (294)
T TIGR01297 240 RIGPGKLVLDVHVEVDPDLDLKEAHDIALEIEREILKRHPFGIEHVTIHVEPLG 293 (294)
T ss_pred EECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 214672578988875464325678999999999886405665316888740368