HHsearch alignment for GI: 254780343 and conserved domain: TIGR01297
>TIGR01297 CDF cation diffusion facilitator family transporter; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells , , however others are implicated in ion uptake . The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016020 membrane.
Probab=96.30 E-value=0.085 Score=30.37 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999999999999--99972--799999999999999999999999999548998668724146779999896
Q gi|254780343|r 11 RMALWGIPISAAITALKIIA--WYVTG--FISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVE 86 (311)
Q Consensus 11 r~~~~~~~~n~~~~~~k~~~--g~~t~--S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~ 86 (311)
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~~ 186 (294)
T TIGR01297 112 IVAGLGLLVNLILALLLLRGHGGHKLGHGSLNLRAAALHVLGDLLGSLGVLIGALLIYFGP-----FGWTWADPIAALLI 186 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHH
T ss_conf 9999999999999999986420221100147899999998888899999999999987402-----55037778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8899998899999999998630022
Q gi|254780343|r 87 GLLMTNIALIILYESWHNMSHSPSN 111 (311)
Q Consensus 87 ~~~l~~~~~~i~~es~~~l~~~~~~ 111 (311)
T Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (294)
T TIGR01297 187 SLLILYTAFRLLKESINVLLDGAPP 211 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999998999999999998510353