Query         gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 154
No_of_seqs    132 out of 756
Neff          4.8 
Searched_HMMs 33803
Date          Wed Jun  1 12:25:42 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780344.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3bp1_A NADPH-dependent 7-cyan 100.0 3.9E-43       0  279.8  12.1  134    7-145   154-290 (290)
  2 >3bp1_A NADPH-dependent 7-cyan 100.0 1.2E-35 3.4E-40  234.8   8.4  115    8-123    20-149 (290)
  3 >1is8_A GTP cyclohydrolase I;   99.8 1.1E-18 3.2E-23  132.7  10.6  108   26-135     4-120 (137)
  4 >1wur_A GTP cyclohydrolase I;   97.3  0.0064 1.9E-07   37.8  11.4   88   29-119     8-95  (140)
  5 >1a8r_A GTP cyclohydrolase I;   96.8   0.012 3.6E-07   36.1   9.0   89   29-118     9-97  (142)
  6 >2a40_B Deoxyribonuclease-1; W  36.7      30 0.00089   15.7   3.4   69   27-124    19-87  (140)
  7 >1c4o_A DNA nucleotide excisio  30.2      12 0.00037   18.0   0.0   26  111-137   181-206 (409)
  8 >2fue_A PMM 1, PMMH-22, phosph  16.7      16 0.00048   17.3  -1.6   59   61-131    37-96  (105)
  9 >2amy_A PMM 2, phosphomannomut  16.6      14 0.00042   17.7  -2.0   59   61-131    36-95  (104)
 10 >1egw_A MADS box transcription  16.4      19 0.00055   16.9  -1.4   47   44-94     30-76  (77)

No 1  
>>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str} (A:)
Probab=100.00  E-value=3.9e-43  Score=279.77  Aligned_cols=134  Identities=23%  Similarity=0.360  Sum_probs=114.9

Q ss_pred             HCCHHCCCC-CCCCCCCCHHHHHCCCCCCCCCCEEEEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             120103765-5577788986820013777886479999614168526899577589999997698676698999999999
Q gi|254780344|r    7 NGLSILGGK-AKPCDDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMAS   85 (154)
Q Consensus         7 ~~lt~LG~~-t~~p~~p~~~lLe~i~~~~~~~~~~i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~S   85 (154)
                      .+....+.+ +....+|++++|++++++.   +|++.++++||+|+||||||||||+|+|+|.|.+.  +.+|||+||+|
T Consensus       154 ~G~~id~lDiei~~y~~~~~~Le~~~~~~---~~~~~l~s~ef~s~CPvTgqPD~~ti~I~Y~p~~~--~~esLk~Yl~S  228 (290)
T 3bp1_A          154 QGECIDDQDIEIANYEFDDALLQGAAQGE---EVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKX--NREALLRYLVS  228 (290)
T ss_dssp             SSEECCCCCCCCCCCSCCGGGGTTCEEEE---EEEEEEEEEEEEEC------CEEEEEEEEEEEEEE--CHHHHHHHHHT
T ss_pred             CCCCCCCCCCEECCCCCCHHHHHCCCCCC---CCCEEEEECCEEECCCCCCCCCCEEEEEEECCCCC--CHHHHHHHHHH
T ss_conf             64435533531114557868851354577---63148984463534877799861489999867642--89999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEECCCC--CCCCCCCCC
Q ss_conf             730452389999999999998618828999999851798313504007999--976526888
Q gi|254780344|r   86 FRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAP--PEGVFLPNQ  145 (154)
Q Consensus        86 frn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~f~~RGGI~i~~~~~~~~~--p~~~~~p~~  145 (154)
                      ||||++|||+|||+||.||+++|+|+||+|.|+|+|||||+|+|++.++..  |.+..+.+|
T Consensus       229 fRn~~~fHE~~v~rI~~Dl~~~~~P~~l~V~a~y~~RGGi~i~p~r~~~~~~~~~~~R~~Rq  290 (290)
T 3bp1_A          229 FREHNEFHEQCVERIFTDIXRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRXARQ  290 (290)
T ss_dssp             TTTCCCCHHHHHHHHHHHHHHHHCCSEEEEEEEECCBTTEEEEEEEESSCCCCSCCCCBTTC
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf             87126259999999999999854975899999985578730764735898898776542369


No 2  
>>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str} (A:)
Probab=100.00  E-value=1.2e-35  Score=234.78  Aligned_cols=115  Identities=18%  Similarity=0.222  Sum_probs=102.1

Q ss_pred             CCHHCCCCCCCCCCCCHHHHHCCCCCCCCCC----------EEEEEECCEEEEECCCCCCCEEEEEEEEECCC-CCCCCH
Q ss_conf             2010376555777889868200137778864----------79999614168526899577589999997698-676698
Q gi|254780344|r    8 GLSILGGKAKPCDDPNEALLERIPSQNKNLN----------YVVRFTIPEFTSLCPVTSQPDFAHMILDYIPK-DWLIES   76 (154)
Q Consensus         8 ~lt~LG~~t~~p~~p~~~lLe~i~~~~~~~~----------~~i~~~~~EftslCpvtgqPD~a~i~I~y~~~-~~~vEs   76 (154)
                      ..+.||+++.|+++|++++|++|||+.++++          +++.|++|||||||| |||||||+++|.|.++ ++||||
T Consensus        20 ~~~~LGk~t~y~~~ydp~lL~~ipr~~~r~~~~i~~~lPf~G~D~W~~yE~S~L~p-~G~Pd~a~~~i~y~~~s~~iIES   98 (290)
T 3bp1_A           20 ASLTLGKKTEYANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQ-KGLPQVAIGEVSIPATSANLIES   98 (290)
T ss_dssp             ----------CCCCCCGGGCCEEEHHHHHGGGTCCSSCSCEEEEEEEEEEEEEECT-TSCEEEEEEEEEEETTSSEEECH
T ss_pred             HCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHCCCCCCCCCCCEEECHHHHHHHCCC-CCCCEEEEEEEEEECCCCCHHHH
T ss_conf             13899998788777884770336742437544998678836457234222343078-99847999999995799741446


Q ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCC-EEEEEE--EEECCC
Q ss_conf             99999999973045-238999999999999861882-899999--985179
Q gi|254780344|r   77 KSLKLFMASFRNHH-SFHEDCTIYIARRLVTILDPK-WLRIGA--YWYPRG  123 (154)
Q Consensus        77 kSLklYL~Sfrn~~-~fhE~~v~~I~~dL~~~~~P~-~l~V~~--~f~~RG  123 (154)
                      |||||||+||||++ +|||+++++|.+||+++++|+ |+++..  .|.+||
T Consensus        99 KSlKLYLnSfn~~~~~~~e~~~~~i~~DL~~~~~~~V~v~l~~~~~~~~~~  149 (290)
T 3bp1_A           99 KSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEP  149 (290)
T ss_dssp             HHHHHHHHTTTTCBCSCHHHHHHHHHHHHHHHHTSCCEEEEEEGGGGTTCB
T ss_pred             HHHHHHHHHHHCEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
T ss_conf             899998877552350778999999999999985996399997353233344


No 3  
>>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} (A:94-230)
Probab=99.79  E-value=1.1e-18  Score=132.67  Aligned_cols=108  Identities=14%  Similarity=0.119  Sum_probs=94.5

Q ss_pred             HHHCCCCCCCCCCEEEEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             82001377788647999961416852689957758999999769867669899999999973045238999999999999
Q gi|254780344|r   26 LLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLV  105 (154)
Q Consensus        26 lLe~i~~~~~~~~~~i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~  105 (154)
                      ++.+|++.  +.+..+.....+|+|+||.++|||||++.|.|.|+++++++++|+.|+.+|+++..+||+++++|+++|.
T Consensus         4 ~~~~~~~~--~~~~~V~~~~i~f~S~CehhllP~~g~v~I~YiP~~~viglskl~r~v~~~a~R~q~QErlt~~Ia~~l~   81 (137)
T 1is8_A            4 LNDAIFDE--DHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAIT   81 (137)
T ss_dssp             HSSSCCEE--EECSCEEEEEEEEEEEETTTCCEEEEEEEEEEECSEECCCHHHHHHHHHHHHSSEECHHHHHHHHHHHHH
T ss_pred             HCCCCCCC--CCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             43656656--7884399951467540133425511499999983895125667999999997384788899999999999


Q ss_pred             HHCCCCEEEEEEE---------EECCCCCCCCEEEECCC
Q ss_conf             8618828999999---------85179831350400799
Q gi|254780344|r  106 TILDPKWLRIGAY---------WYPRGGIPIDIFWQTSA  135 (154)
Q Consensus       106 ~~~~P~~l~V~~~---------f~~RGGI~i~~~~~~~~  135 (154)
                      ++++|+++.|...         +.+|||+.+...+.+|.
T Consensus        82 ~~l~p~gv~V~~~a~H~C~~~Rgv~~~~~~~~t~~~~G~  120 (137)
T 1is8_A           82 EALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGV  120 (137)
T ss_dssp             HHHCCSEEEEEEEEEEHHHHTTC--CTTCEEEEEEEEEH
T ss_pred             HHCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEE
T ss_conf             744878189999889726255688789961899886778


No 4  
>>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine, tetrahydrobiopterin, structural genomics; HET: 8DG; 1.82A {Thermus thermophilus} (A:81-220)
Probab=97.31  E-value=0.0064  Score=37.76  Aligned_cols=88  Identities=20%  Similarity=0.360  Sum_probs=73.3

Q ss_pred             CCCCCCCCCCEEEEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
Q ss_conf             01377788647999961416852689957758999999769867669899999999973045238999999999999861
Q gi|254780344|r   29 RIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTIL  108 (154)
Q Consensus        29 ~i~~~~~~~~~~i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~  108 (154)
                      .||+.+.+- ..++  -=.|.|+|.-.=.|=+|.+.|-|.|+.+++-...|.....-|--.---+|..+..|++-|.+.+
T Consensus         8 ~F~~~~~~m-Viv~--~I~f~S~CEHHlLPf~G~~hVaYiP~~~ViGlSKl~Riv~~~a~RlQiQERlt~qIa~al~~~l   84 (140)
T 1wur_A            8 VFPAEGSEM-VVVK--GVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVL   84 (140)
T ss_dssp             EEECSCSSC-EEEE--EEEEEEEETTTCCEEEEEEEEEEECSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCE-EEEC--CCEEEEEEHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             223456744-9975--9535520021275224568999963897567678999999998340127899999999999862


Q ss_pred             CCCEEEEEEEE
Q ss_conf             88289999998
Q gi|254780344|r  109 DPKWLRIGAYW  119 (154)
Q Consensus       109 ~P~~l~V~~~f  119 (154)
                      +|+-+.|...-
T Consensus        85 ~p~gVaV~i~a   95 (140)
T 1wur_A           85 EPQGVGVVVEG   95 (140)
T ss_dssp             CCSEEEEEEEE
T ss_pred             CCCCEEEEEEE
T ss_conf             97817999988


No 5  
>>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} (A:80-221)
Probab=96.82  E-value=0.012  Score=36.11  Aligned_cols=89  Identities=21%  Similarity=0.177  Sum_probs=71.8

Q ss_pred             CCCCCCCCCCEEEEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
Q ss_conf             01377788647999961416852689957758999999769867669899999999973045238999999999999861
Q gi|254780344|r   29 RIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTIL  108 (154)
Q Consensus        29 ~i~~~~~~~~~~i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~  108 (154)
                      .+++.....+.+ ...-=+|.|.|.-.=.|=+|.+.|-|.|+.+++-...|.....-|--.---+|..+..|++.|.+.+
T Consensus         9 ~f~~~~~~~~mV-iv~~I~f~S~CEHHllPf~G~~hVaYiP~~~viGlSKl~Riv~~~arRlQiQERlt~qIa~~l~~~l   87 (142)
T 1a8r_A            9 LIENKMKVDEMV-TVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLL   87 (142)
T ss_dssp             EEECTTCCCSCE-EEEEEEEEEEETTTTEEEEEEEEEEECCSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCCCEE-EECCCCEEEECCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             111135766349-9727645765243453033468999972684004466999999998374007899999999999972


Q ss_pred             CCCEEEEEEE
Q ss_conf             8828999999
Q gi|254780344|r  109 DPKWLRIGAY  118 (154)
Q Consensus       109 ~P~~l~V~~~  118 (154)
                      +|+-+.|...
T Consensus        88 ~p~gV~V~ie   97 (142)
T 1a8r_A           88 GTNNVAVSID   97 (142)
T ss_dssp             TCSCEEEEEE
T ss_pred             CCCCEEEEEE
T ss_conf             9796799999


No 6  
>>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} (B:88-227)
Probab=36.71  E-value=30  Score=15.67  Aligned_cols=69  Identities=17%  Similarity=0.112  Sum_probs=50.2

Q ss_pred             HHCCCCCCCCCCEEEEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             20013777886479999614168526899577589999997698676698999999999730452389999999999998
Q gi|254780344|r   27 LERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVT  106 (154)
Q Consensus        27 Le~i~~~~~~~~~~i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~  106 (154)
                      -+.|.|    ..|.++|.+       +.|+..||+-+-++-.|+...-|...|-                  ..+.++.+
T Consensus        19 ~d~F~R----eP~~v~F~~-------~~~~~~df~lv~~Ht~p~~~~~E~~~L~------------------dV~~~v~~   69 (140)
T 2a40_B           19 NDSFSR----EPAVVKFSS-------HSTKVKEFAIVALHSAPSDAVAEINSLY------------------DVYLDVQQ   69 (140)
T ss_dssp             HHHCSS----CCEEEEEEC-------TTSSSSEEEEEECCCCGGGHHHHHHHHH------------------HHHHHHHH
T ss_pred             CCCCCC----CEEEEEEEE-------ECCCCEEEEEEECCCCCCCHHHHHHHHH------------------HHHHHHHH
T ss_conf             422220----103688996-------0578728998502333321489999989------------------99998875


Q ss_pred             HCCCCEEEEEEEEECCCC
Q ss_conf             618828999999851798
Q gi|254780344|r  107 ILDPKWLRIGAYWYPRGG  124 (154)
Q Consensus       107 ~~~P~~l~V~~~f~~RGG  124 (154)
                      ..+-.-+.+-|+|+.-.+
T Consensus        70 ~~~~~dviilGDFNa~c~   87 (140)
T 2a40_B           70 KWHLNDVMLMGDFNADCS   87 (140)
T ss_dssp             HHCCCCEEEEEECCCSTT
T ss_pred             HCCCCCEEEECCCCCCCC
T ss_conf             046787798341256777


No 7  
>>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hyperthermostable protein; HET: DNA BOG; 1.50A {Thermus thermophilus} (A:1-409)
Probab=30.23  E-value=12  Score=17.98  Aligned_cols=26  Identities=15%  Similarity=0.243  Sum_probs=15.4

Q ss_pred             CEEEEEEEEECCCCCCCCEEEECCCCC
Q ss_conf             289999998517983135040079999
Q gi|254780344|r  111 KWLRIGAYWYPRGGIPIDIFWQTSAPP  137 (154)
Q Consensus       111 ~~l~V~~~f~~RGGI~i~~~~~~~~~p  137 (154)
                      ..+.-.|.|..|||| ||+|.-.+..|
T Consensus       181 ~~Ve~~GefsvRG~I-iDIfp~~~~~P  206 (409)
T 1c4o_A          181 DIDLSPGRFRAKGEV-LEIFPAYETEP  206 (409)
T ss_dssp             ---------------------------
T ss_pred             CEEECCCEEEECCCE-EEECCCCCCCC
T ss_conf             336416504400997-99841567762


No 8  
>>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosylation; HET: MSE M1P; 1.75A {Homo sapiens} (A:98-202)
Probab=16.74  E-value=16  Score=17.29  Aligned_cols=59  Identities=20%  Similarity=0.315  Sum_probs=31.5

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEE
Q ss_conf             9999997698676698999999999730452389-9999999999986188289999998517983135040
Q gi|254780344|r   61 AHMILDYIPKDWLIESKSLKLFMASFRNHHSFHE-DCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFW  131 (154)
Q Consensus        61 a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE-~~v~~I~~dL~~~~~P~~l~V~~~f~~RGGI~i~~~~  131 (154)
                      +.|.|.+.+.....            -++..|.+ +..+.|-+.++++++-++-..-..|.--|-|++|+|-
T Consensus        37 gmiNisPiGRncs~------------~ER~eF~~yDk~h~IR~~~v~~L~~~F~~~gL~fSIGGQISfDvFP   96 (105)
T 2fue_A           37 GXLNISPIGRSCTL------------EERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGXISFDVFP   96 (105)
T ss_dssp             SCEEECSSCTTCCH------------HHHHHHHHHHHHHCHHHHHHHHHHHHTTTSCEEEECCSSSCEEEEE
T ss_pred             HHHCCCCCCCCCCH------------HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf             43202312245535------------5555666530010245779999998750134136532675331023


No 9  
>>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, HAD superfamily, jaecken disease; 2.09A {Homo sapiens} (A:90-193)
Probab=16.65  E-value=14  Score=17.67  Aligned_cols=59  Identities=22%  Similarity=0.284  Sum_probs=31.4

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEE
Q ss_conf             9999997698676698999999999730452389-9999999999986188289999998517983135040
Q gi|254780344|r   61 AHMILDYIPKDWLIESKSLKLFMASFRNHHSFHE-DCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFW  131 (154)
Q Consensus        61 a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE-~~v~~I~~dL~~~~~P~~l~V~~~f~~RGGI~i~~~~  131 (154)
                      +.|.|.+.+...   |.         -++..|.+ +..+.|-+.++++++-++-..-..|.--|-|++|+|-
T Consensus        36 gmiNisPiGRnc---s~---------~ER~eF~~yDk~h~iR~k~v~~L~~~F~~~gL~~SIGGQISfDvFP   95 (104)
T 2amy_A           36 GXLNVSPIGRSC---SQ---------EERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFP   95 (104)
T ss_dssp             TEEEECSSCTTC---CH---------HHHHHHHHHHHHHCHHHHHHHHHHHHTTTSCEEEEEETTTEEEEEE
T ss_pred             CCCEEEECCCCC---CH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEC
T ss_conf             211232112345---42---------3313556542124556899999998743455068853897433314


No 10 
>>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} (A:)
Probab=16.43  E-value=19  Score=16.94  Aligned_cols=47  Identities=19%  Similarity=0.317  Sum_probs=28.4

Q ss_pred             ECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             614168526899577589999997698676698999999999730452389
Q gi|254780344|r   44 TIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHE   94 (154)
Q Consensus        44 ~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE   94 (154)
                      .+.||+-||.+    +.|.|.....+.....-+-+++--|..|.++..-||
T Consensus        30 Ka~ELs~LCg~----evaliv~s~~gk~~~f~~~~~~~vl~ry~~~~~~~~   76 (77)
T 1egw_A           30 KAYELSVLCDC----EIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHE   76 (77)
T ss_dssp             HHHHHHHHTTC----EEEEEEECTTCCEEEEESSCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHCCC----EEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf             89999854087----399999869998745559999999999971588678


Done!