Query gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 154 No_of_seqs 132 out of 756 Neff 4.8 Searched_HMMs 33803 Date Wed Jun 1 12:25:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780344.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3bp1_A NADPH-dependent 7-cyan 100.0 3.9E-43 0 279.8 12.1 134 7-145 154-290 (290) 2 >3bp1_A NADPH-dependent 7-cyan 100.0 1.2E-35 3.4E-40 234.8 8.4 115 8-123 20-149 (290) 3 >1is8_A GTP cyclohydrolase I; 99.8 1.1E-18 3.2E-23 132.7 10.6 108 26-135 4-120 (137) 4 >1wur_A GTP cyclohydrolase I; 97.3 0.0064 1.9E-07 37.8 11.4 88 29-119 8-95 (140) 5 >1a8r_A GTP cyclohydrolase I; 96.8 0.012 3.6E-07 36.1 9.0 89 29-118 9-97 (142) 6 >2a40_B Deoxyribonuclease-1; W 36.7 30 0.00089 15.7 3.4 69 27-124 19-87 (140) 7 >1c4o_A DNA nucleotide excisio 30.2 12 0.00037 18.0 0.0 26 111-137 181-206 (409) 8 >2fue_A PMM 1, PMMH-22, phosph 16.7 16 0.00048 17.3 -1.6 59 61-131 37-96 (105) 9 >2amy_A PMM 2, phosphomannomut 16.6 14 0.00042 17.7 -2.0 59 61-131 36-95 (104) 10 >1egw_A MADS box transcription 16.4 19 0.00055 16.9 -1.4 47 44-94 30-76 (77) No 1 >>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str} (A:) Probab=100.00 E-value=3.9e-43 Score=279.77 Aligned_cols=134 Identities=23% Similarity=0.360 Sum_probs=114.9 Q ss_pred HCCHHCCCC-CCCCCCCCHHHHHCCCCCCCCCCEEEEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHH Q ss_conf 120103765-5577788986820013777886479999614168526899577589999997698676698999999999 Q gi|254780344|r 7 NGLSILGGK-AKPCDDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMAS 85 (154) Q Consensus 7 ~~lt~LG~~-t~~p~~p~~~lLe~i~~~~~~~~~~i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~S 85 (154) .+....+.+ +....+|++++|++++++. +|++.++++||+|+||||||||||+|+|+|.|.+. +.+|||+||+| T Consensus 154 ~G~~id~lDiei~~y~~~~~~Le~~~~~~---~~~~~l~s~ef~s~CPvTgqPD~~ti~I~Y~p~~~--~~esLk~Yl~S 228 (290) T 3bp1_A 154 QGECIDDQDIEIANYEFDDALLQGAAQGE---EVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKX--NREALLRYLVS 228 (290) T ss_dssp SSEECCCCCCCCCCCSCCGGGGTTCEEEE---EEEEEEEEEEEEEC------CEEEEEEEEEEEEEE--CHHHHHHHHHT T ss_pred CCCCCCCCCCEECCCCCCHHHHHCCCCCC---CCCEEEEECCEEECCCCCCCCCCEEEEEEECCCCC--CHHHHHHHHHH T ss_conf 64435533531114557868851354577---63148984463534877799861489999867642--89999999999 Q ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEECCCC--CCCCCCCCC Q ss_conf 730452389999999999998618828999999851798313504007999--976526888 Q gi|254780344|r 86 FRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAP--PEGVFLPNQ 145 (154) Q Consensus 86 frn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~f~~RGGI~i~~~~~~~~~--p~~~~~p~~ 145 (154) ||||++|||+|||+||.||+++|+|+||+|.|+|+|||||+|+|++.++.. |.+..+.+| T Consensus 229 fRn~~~fHE~~v~rI~~Dl~~~~~P~~l~V~a~y~~RGGi~i~p~r~~~~~~~~~~~R~~Rq 290 (290) T 3bp1_A 229 FREHNEFHEQCVERIFTDIXRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRXARQ 290 (290) T ss_dssp TTTCCCCHHHHHHHHHHHHHHHHCCSEEEEEEEECCBTTEEEEEEEESSCCCCSCCCCBTTC T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCC T ss_conf 87126259999999999999854975899999985578730764735898898776542369 No 2 >>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str} (A:) Probab=100.00 E-value=1.2e-35 Score=234.78 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=102.1 Q ss_pred CCHHCCCCCCCCCCCCHHHHHCCCCCCCCCC----------EEEEEECCEEEEECCCCCCCEEEEEEEEECCC-CCCCCH Q ss_conf 2010376555777889868200137778864----------79999614168526899577589999997698-676698 Q gi|254780344|r 8 GLSILGGKAKPCDDPNEALLERIPSQNKNLN----------YVVRFTIPEFTSLCPVTSQPDFAHMILDYIPK-DWLIES 76 (154) Q Consensus 8 ~lt~LG~~t~~p~~p~~~lLe~i~~~~~~~~----------~~i~~~~~EftslCpvtgqPD~a~i~I~y~~~-~~~vEs 76 (154) ..+.||+++.|+++|++++|++|||+.++++ +++.|++|||||||| |||||||+++|.|.++ ++|||| T Consensus 20 ~~~~LGk~t~y~~~ydp~lL~~ipr~~~r~~~~i~~~lPf~G~D~W~~yE~S~L~p-~G~Pd~a~~~i~y~~~s~~iIES 98 (290) T 3bp1_A 20 ASLTLGKKTEYANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQ-KGLPQVAIGEVSIPATSANLIES 98 (290) T ss_dssp ----------CCCCCCGGGCCEEEHHHHHGGGTCCSSCSCEEEEEEEEEEEEEECT-TSCEEEEEEEEEEETTSSEEECH T ss_pred HCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHCCCCCCCCCCCEEECHHHHHHHCCC-CCCCEEEEEEEEEECCCCCHHHH T ss_conf 13899998788777884770336742437544998678836457234222343078-99847999999995799741446 Q ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCC-EEEEEE--EEECCC Q ss_conf 99999999973045-238999999999999861882-899999--985179 Q gi|254780344|r 77 KSLKLFMASFRNHH-SFHEDCTIYIARRLVTILDPK-WLRIGA--YWYPRG 123 (154) Q Consensus 77 kSLklYL~Sfrn~~-~fhE~~v~~I~~dL~~~~~P~-~l~V~~--~f~~RG 123 (154) |||||||+||||++ +|||+++++|.+||+++++|+ |+++.. .|.+|| T Consensus 99 KSlKLYLnSfn~~~~~~~e~~~~~i~~DL~~~~~~~V~v~l~~~~~~~~~~ 149 (290) T 3bp1_A 99 KSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEP 149 (290) T ss_dssp HHHHHHHHTTTTCBCSCHHHHHHHHHHHHHHHHTSCCEEEEEEGGGGTTCB T ss_pred HHHHHHHHHHHCEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC T ss_conf 899998877552350778999999999999985996399997353233344 No 3 >>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} (A:94-230) Probab=99.79 E-value=1.1e-18 Score=132.67 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=94.5 Q ss_pred HHHCCCCCCCCCCEEEEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 82001377788647999961416852689957758999999769867669899999999973045238999999999999 Q gi|254780344|r 26 LLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLV 105 (154) Q Consensus 26 lLe~i~~~~~~~~~~i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~ 105 (154) ++.+|++. +.+..+.....+|+|+||.++|||||++.|.|.|+++++++++|+.|+.+|+++..+||+++++|+++|. T Consensus 4 ~~~~~~~~--~~~~~V~~~~i~f~S~CehhllP~~g~v~I~YiP~~~viglskl~r~v~~~a~R~q~QErlt~~Ia~~l~ 81 (137) T 1is8_A 4 LNDAIFDE--DHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAIT 81 (137) T ss_dssp HSSSCCEE--EECSCEEEEEEEEEEEETTTCCEEEEEEEEEEECSEECCCHHHHHHHHHHHHSSEECHHHHHHHHHHHHH T ss_pred HCCCCCCC--CCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 43656656--7884399951467540133425511499999983895125667999999997384788899999999999 Q ss_pred HHCCCCEEEEEEE---------EECCCCCCCCEEEECCC Q ss_conf 8618828999999---------85179831350400799 Q gi|254780344|r 106 TILDPKWLRIGAY---------WYPRGGIPIDIFWQTSA 135 (154) Q Consensus 106 ~~~~P~~l~V~~~---------f~~RGGI~i~~~~~~~~ 135 (154) ++++|+++.|... +.+|||+.+...+.+|. T Consensus 82 ~~l~p~gv~V~~~a~H~C~~~Rgv~~~~~~~~t~~~~G~ 120 (137) T 1is8_A 82 EALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGV 120 (137) T ss_dssp HHHCCSEEEEEEEEEEHHHHTTC--CTTCEEEEEEEEEH T ss_pred HHCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEE T ss_conf 744878189999889726255688789961899886778 No 4 >>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine, tetrahydrobiopterin, structural genomics; HET: 8DG; 1.82A {Thermus thermophilus} (A:81-220) Probab=97.31 E-value=0.0064 Score=37.76 Aligned_cols=88 Identities=20% Similarity=0.360 Sum_probs=73.3 Q ss_pred CCCCCCCCCCEEEEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC Q ss_conf 01377788647999961416852689957758999999769867669899999999973045238999999999999861 Q gi|254780344|r 29 RIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTIL 108 (154) Q Consensus 29 ~i~~~~~~~~~~i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~ 108 (154) .||+.+.+- ..++ -=.|.|+|.-.=.|=+|.+.|-|.|+.+++-...|.....-|--.---+|..+..|++-|.+.+ T Consensus 8 ~F~~~~~~m-Viv~--~I~f~S~CEHHlLPf~G~~hVaYiP~~~ViGlSKl~Riv~~~a~RlQiQERlt~qIa~al~~~l 84 (140) T 1wur_A 8 VFPAEGSEM-VVVK--GVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVL 84 (140) T ss_dssp EEECSCSSC-EEEE--EEEEEEEETTTCCEEEEEEEEEEECSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCE-EEEC--CCEEEEEEHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 223456744-9975--9535520021275224568999963897567678999999998340127899999999999862 Q ss_pred CCCEEEEEEEE Q ss_conf 88289999998 Q gi|254780344|r 109 DPKWLRIGAYW 119 (154) Q Consensus 109 ~P~~l~V~~~f 119 (154) +|+-+.|...- T Consensus 85 ~p~gVaV~i~a 95 (140) T 1wur_A 85 EPQGVGVVVEG 95 (140) T ss_dssp CCSEEEEEEEE T ss_pred CCCCEEEEEEE T ss_conf 97817999988 No 5 >>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} (A:80-221) Probab=96.82 E-value=0.012 Score=36.11 Aligned_cols=89 Identities=21% Similarity=0.177 Sum_probs=71.8 Q ss_pred CCCCCCCCCCEEEEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC Q ss_conf 01377788647999961416852689957758999999769867669899999999973045238999999999999861 Q gi|254780344|r 29 RIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTIL 108 (154) Q Consensus 29 ~i~~~~~~~~~~i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~ 108 (154) .+++.....+.+ ...-=+|.|.|.-.=.|=+|.+.|-|.|+.+++-...|.....-|--.---+|..+..|++.|.+.+ T Consensus 9 ~f~~~~~~~~mV-iv~~I~f~S~CEHHllPf~G~~hVaYiP~~~viGlSKl~Riv~~~arRlQiQERlt~qIa~~l~~~l 87 (142) T 1a8r_A 9 LIENKMKVDEMV-TVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLL 87 (142) T ss_dssp EEECTTCCCSCE-EEEEEEEEEEETTTTEEEEEEEEEEECCSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHH T ss_pred HCCCCCCCCCEE-EECCCCEEEECCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 111135766349-9727645765243453033468999972684004466999999998374007899999999999972 Q ss_pred CCCEEEEEEE Q ss_conf 8828999999 Q gi|254780344|r 109 DPKWLRIGAY 118 (154) Q Consensus 109 ~P~~l~V~~~ 118 (154) +|+-+.|... T Consensus 88 ~p~gV~V~ie 97 (142) T 1a8r_A 88 GTNNVAVSID 97 (142) T ss_dssp TCSCEEEEEE T ss_pred CCCCEEEEEE T ss_conf 9796799999 No 6 >>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} (B:88-227) Probab=36.71 E-value=30 Score=15.67 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=50.2 Q ss_pred HHCCCCCCCCCCEEEEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 20013777886479999614168526899577589999997698676698999999999730452389999999999998 Q gi|254780344|r 27 LERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVT 106 (154) Q Consensus 27 Le~i~~~~~~~~~~i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~ 106 (154) -+.|.| ..|.++|.+ +.|+..||+-+-++-.|+...-|...|- ..+.++.+ T Consensus 19 ~d~F~R----eP~~v~F~~-------~~~~~~df~lv~~Ht~p~~~~~E~~~L~------------------dV~~~v~~ 69 (140) T 2a40_B 19 NDSFSR----EPAVVKFSS-------HSTKVKEFAIVALHSAPSDAVAEINSLY------------------DVYLDVQQ 69 (140) T ss_dssp HHHCSS----CCEEEEEEC-------TTSSSSEEEEEECCCCGGGHHHHHHHHH------------------HHHHHHHH T ss_pred CCCCCC----CEEEEEEEE-------ECCCCEEEEEEECCCCCCCHHHHHHHHH------------------HHHHHHHH T ss_conf 422220----103688996-------0578728998502333321489999989------------------99998875 Q ss_pred HCCCCEEEEEEEEECCCC Q ss_conf 618828999999851798 Q gi|254780344|r 107 ILDPKWLRIGAYWYPRGG 124 (154) Q Consensus 107 ~~~P~~l~V~~~f~~RGG 124 (154) ..+-.-+.+-|+|+.-.+ T Consensus 70 ~~~~~dviilGDFNa~c~ 87 (140) T 2a40_B 70 KWHLNDVMLMGDFNADCS 87 (140) T ss_dssp HHCCCCEEEEEECCCSTT T ss_pred HCCCCCEEEECCCCCCCC T ss_conf 046787798341256777 No 7 >>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hyperthermostable protein; HET: DNA BOG; 1.50A {Thermus thermophilus} (A:1-409) Probab=30.23 E-value=12 Score=17.98 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=15.4 Q ss_pred CEEEEEEEEECCCCCCCCEEEECCCCC Q ss_conf 289999998517983135040079999 Q gi|254780344|r 111 KWLRIGAYWYPRGGIPIDIFWQTSAPP 137 (154) Q Consensus 111 ~~l~V~~~f~~RGGI~i~~~~~~~~~p 137 (154) ..+.-.|.|..|||| ||+|.-.+..| T Consensus 181 ~~Ve~~GefsvRG~I-iDIfp~~~~~P 206 (409) T 1c4o_A 181 DIDLSPGRFRAKGEV-LEIFPAYETEP 206 (409) T ss_dssp --------------------------- T ss_pred CEEECCCEEEECCCE-EEECCCCCCCC T ss_conf 336416504400997-99841567762 No 8 >>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosylation; HET: MSE M1P; 1.75A {Homo sapiens} (A:98-202) Probab=16.74 E-value=16 Score=17.29 Aligned_cols=59 Identities=20% Similarity=0.315 Sum_probs=31.5 Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEE Q ss_conf 9999997698676698999999999730452389-9999999999986188289999998517983135040 Q gi|254780344|r 61 AHMILDYIPKDWLIESKSLKLFMASFRNHHSFHE-DCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFW 131 (154) Q Consensus 61 a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE-~~v~~I~~dL~~~~~P~~l~V~~~f~~RGGI~i~~~~ 131 (154) +.|.|.+.+..... -++..|.+ +..+.|-+.++++++-++-..-..|.--|-|++|+|- T Consensus 37 gmiNisPiGRncs~------------~ER~eF~~yDk~h~IR~~~v~~L~~~F~~~gL~fSIGGQISfDvFP 96 (105) T 2fue_A 37 GXLNISPIGRSCTL------------EERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGXISFDVFP 96 (105) T ss_dssp SCEEECSSCTTCCH------------HHHHHHHHHHHHHCHHHHHHHHHHHHTTTSCEEEECCSSSCEEEEE T ss_pred HHHCCCCCCCCCCH------------HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC T ss_conf 43202312245535------------5555666530010245779999998750134136532675331023 No 9 >>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, HAD superfamily, jaecken disease; 2.09A {Homo sapiens} (A:90-193) Probab=16.65 E-value=14 Score=17.67 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=31.4 Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEE Q ss_conf 9999997698676698999999999730452389-9999999999986188289999998517983135040 Q gi|254780344|r 61 AHMILDYIPKDWLIESKSLKLFMASFRNHHSFHE-DCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFW 131 (154) Q Consensus 61 a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE-~~v~~I~~dL~~~~~P~~l~V~~~f~~RGGI~i~~~~ 131 (154) +.|.|.+.+... |. -++..|.+ +..+.|-+.++++++-++-..-..|.--|-|++|+|- T Consensus 36 gmiNisPiGRnc---s~---------~ER~eF~~yDk~h~iR~k~v~~L~~~F~~~gL~~SIGGQISfDvFP 95 (104) T 2amy_A 36 GXLNVSPIGRSC---SQ---------EERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFP 95 (104) T ss_dssp TEEEECSSCTTC---CH---------HHHHHHHHHHHHHCHHHHHHHHHHHHTTTSCEEEEEETTTEEEEEE T ss_pred CCCEEEECCCCC---CH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEC T ss_conf 211232112345---42---------3313556542124556899999998743455068853897433314 No 10 >>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} (A:) Probab=16.43 E-value=19 Score=16.94 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=28.4 Q ss_pred ECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHH Q ss_conf 614168526899577589999997698676698999999999730452389 Q gi|254780344|r 44 TIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHE 94 (154) Q Consensus 44 ~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE 94 (154) .+.||+-||.+ +.|.|.....+.....-+-+++--|..|.++..-|| T Consensus 30 Ka~ELs~LCg~----evaliv~s~~gk~~~f~~~~~~~vl~ry~~~~~~~~ 76 (77) T 1egw_A 30 KAYELSVLCDC----EIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHE 76 (77) T ss_dssp HHHHHHHHTTC----EEEEEEECTTCCEEEEESSCHHHHHHHHHHC----- T ss_pred HHHHHHHHCCC----EEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCCC T ss_conf 89999854087----399999869998745559999999999971588678 Done!