Query gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 154 No_of_seqs 132 out of 756 Neff 4.8 Searched_HMMs 13730 Date Wed Jun 1 05:36:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780344.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1wpla_ d.96.1.1 (A:) GTP cycl 97.1 0.0029 2.1E-07 37.5 9.7 80 40-119 73-152 (194) 2 d1a8ra_ d.96.1.1 (A:) GTP cycl 97.1 0.0023 1.7E-07 38.1 9.0 78 41-118 99-176 (221) 3 d1wura1 d.96.1.1 (A:32-216) GT 97.1 0.0029 2.1E-07 37.5 9.5 77 42-118 67-143 (185) 4 d1c4oa1 c.37.1.19 (A:2-409) Nu 20.9 9.7 0.00071 16.3 0.0 37 109-146 179-215 (408) 5 d2b2na1 c.37.1.19 (A:26-333) T 20.6 12 0.0009 15.7 0.5 18 71-88 191-208 (308) 6 d1egwa_ d.88.1.1 (A:) Myocyte 17.6 6.8 0.0005 17.2 -1.4 40 44-89 30-71 (71) 7 d2ccwa1 b.6.1.1 (A:1-129) Azur 11.9 40 0.0029 12.6 3.6 46 12-57 66-117 (129) 8 d2ilxa1 d.61.1.3 (A:1-219) 2', 8.7 52 0.0038 11.9 1.0 49 75-123 18-80 (219) 9 d1zl0a2 c.23.16.7 (A:3-169) LD 8.4 54 0.0039 11.8 6.3 67 53-124 6-86 (167) 10 d1t6la1 d.131.1.2 (A:10-135) U 7.5 59 0.0043 11.6 1.5 10 47-57 115-124 (126) No 1 >d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=97.09 E-value=0.0029 Score=37.51 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=70.4 Q ss_pred EEEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 99996141685268995775899999976986766989999999997304523899999999999986188289999998 Q gi|254780344|r 40 VVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYW 119 (154) Q Consensus 40 ~i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~f 119 (154) .+....=.|.|+|.-.=+|=+|.+.|-|.|+++++-...|.....-|--.---+|..+..|.+.|.+.++|.-+.|...= T Consensus 73 ~Vv~~~I~f~S~CEHHllPf~G~~~IaYiP~~~viGlSKl~Riv~~~arRlQ~QErlt~qIa~~l~~~l~~~gv~V~i~A 152 (194) T d1wpla_ 73 MVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEA 152 (194) T ss_dssp EEEEEEEEEEEEETTTCCEEEEEEEEEEECSSEECCHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEEE T ss_pred EEEEECCEEEEECCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 69981766874237650256137999998489624566799999999873130779999999999986787866999999 No 2 >d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli [TaxId: 562]} Probab=97.06 E-value=0.0023 Score=38.14 Aligned_cols=78 Identities=22% Similarity=0.205 Sum_probs=68.7 Q ss_pred EEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 999614168526899577589999997698676698999999999730452389999999999998618828999999 Q gi|254780344|r 41 VRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAY 118 (154) Q Consensus 41 i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~ 118 (154) +...-=+|.|+|.-.=+|=+|.+.|-|.|+++++-...|.....-|-..---+|..+..|.+.|.+.++|.-+.|... T Consensus 99 V~v~~I~f~S~CEHHllPf~G~~hVaYiP~~~viGLSKl~RiV~~~arRlQvQErLT~qIA~al~~~l~p~GVaV~ie 176 (221) T d1a8ra_ 99 VTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSID 176 (221) T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEECCSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHTCSCEEEEEE T ss_pred EEECCCCEEEECCCCCCCEEEEEEEEEEECCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 997275446652534541122589999735823032579999999983720088999999999999849783899999 No 3 >d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus thermophilus [TaxId: 274]} Probab=97.06 E-value=0.0029 Score=37.50 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=69.2 Q ss_pred EEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 99614168526899577589999997698676698999999999730452389999999999998618828999999 Q gi|254780344|r 42 RFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAY 118 (154) Q Consensus 42 ~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~ 118 (154) ....=.|.|+|.-.=+|=+|.+.|-|.|+++++-...|.....-|--.---+|..++.|.+.|.+.++|.-+.|... T Consensus 67 vv~~I~f~S~CEHHllPf~G~~~iaYiP~~~vvGlSKl~Riv~~~arRlQ~QErlt~qIa~~l~~~l~~~gv~V~i~ 143 (185) T d1wura1 67 VVKGVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVE 143 (185) T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEECSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEE T ss_pred EECCCEEEEEEHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 96594588650111763046289999648974475779999999995743378999999999999739782899999 No 4 >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Probab=20.87 E-value=9.7 Score=16.29 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=21.0 Q ss_pred CCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCC Q ss_conf 88289999998517983135040079999765268888 Q gi|254780344|r 109 DPKWLRIGAYWYPRGGIPIDIFWQTSAPPEGVFLPNQD 146 (154) Q Consensus 109 ~P~~l~V~~~f~~RGGI~i~~~~~~~~~p~~~~~p~~~ 146 (154) .-..+.-.|.|..|||| ||+|--+...|--+...+-. T Consensus 179 r~~~V~~~GefsvRG~I-lDIfp~~~~~P~RIeffgDe 215 (408) T d1c4oa1 179 RNDIDLSPGRFRAKGEV-LEIFPAYETEPIRVELFGDE 215 (408) T ss_dssp -------------------------------------- T ss_pred ECCEEECCCEEEEECCC-EEECCCCCCCCEEEEEECCC T ss_conf 14305336605730671-27600245763789994673 No 5 >d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Probab=20.64 E-value=12 Score=15.65 Aligned_cols=18 Identities=17% Similarity=0.593 Sum_probs=7.3 Q ss_pred CCCCCHHHHHHHHHHHHH Q ss_conf 676698999999999730 Q gi|254780344|r 71 DWLIESKSLKLFMASFRN 88 (154) Q Consensus 71 ~~~vEskSLklYL~Sfrn 88 (154) ..+...++++.+...+++ T Consensus 191 E~~~~~~~i~~~~~~~~~ 208 (308) T d2b2na1 191 EFPTDKAAIELFRSQWRD 208 (308) T ss_dssp SSCCSHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 220158999999999999 No 6 >d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Probab=17.63 E-value=6.8 Score=17.22 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=18.6 Q ss_pred ECCEEEEECCCCCCCEEEEEEEEECCCCCC--CCHHHHHHHHHHHHHC Q ss_conf 614168526899577589999997698676--6989999999997304 Q gi|254780344|r 44 TIPEFTSLCPVTSQPDFAHMILDYIPKDWL--IESKSLKLFMASFRNH 89 (154) Q Consensus 44 ~~~EftslCpvtgqPD~a~i~I~y~~~~~~--vEskSLklYL~Sfrn~ 89 (154) .+.|++-||.+ +.|.+.+ .++.+. .-+.++...|..|.+| T Consensus 30 Ka~ELs~LC~~----~valiv~--s~~gk~~~f~s~~~~~vl~ry~~~ 71 (71) T d1egwa_ 30 KAYELSVLCDC----EIALIIF--NSSNKLFQYASTDMDKVLLKYTEY 71 (71) T ss_dssp HHHHHHHHTTC----EEEEEEE--CTTCCEEEEESSCHHHHHHHHHHC T ss_pred HHHHHHHCCCC----CEEEEEE--CCCCCEEEEECCCHHHHHHHHHCC T ss_conf 99999610598----1899998--599988886589999999988319 No 7 >d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} Probab=11.86 E-value=40 Score=12.57 Aligned_cols=46 Identities=9% Similarity=0.198 Sum_probs=27.1 Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECC------EEEEECCCCCC Q ss_conf 37655577788986820013777886479999614------16852689957 Q gi|254780344|r 12 LGGKAKPCDDPNEALLERIPSQNKNLNYVVRFTIP------EFTSLCPVTSQ 57 (154) Q Consensus 12 LG~~t~~p~~p~~~lLe~i~~~~~~~~~~i~~~~~------EftslCpvtgq 57 (154) +|....++..-++.+|-.-+--.++....+.|+++ ++...|.+-|. T Consensus 66 ~~~~~~~~~~~~~~via~t~~l~pget~~i~f~~p~~~~~G~Y~f~Ct~PGH 117 (129) T d2ccwa1 66 AGLAQDYVKAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGH 117 (129) T ss_dssp HCGGGTTSCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTG T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCH T ss_conf 3102456897653100122245888457999994366889609999699990 No 8 >d2ilxa1 d.61.1.3 (A:1-219) 2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=8.71 E-value=52 Score=11.88 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=34.0 Q ss_pred CHHHHH----HHHHHHHHCCCHHHHHHHHHH-------HHHHHHC---CCCEEEEEEEEECCC Q ss_conf 989999----999997304523899999999-------9999861---882899999985179 Q gi|254780344|r 75 ESKSLK----LFMASFRNHHSFHEDCTIYIA-------RRLVTIL---DPKWLRIGAYWYPRG 123 (154) Q Consensus 75 EskSLk----lYL~Sfrn~~~fhE~~v~~I~-------~dL~~~~---~P~~l~V~~~f~~RG 123 (154) ++..|+ -.|...-|+.+||++..+-.. .||.+.+ .|.-+..++.|.-=| T Consensus 18 ~se~l~~~~~~fl~~L~~l~afk~~l~~~~~~~~~~~~~DL~~yF~~~~p~~lHCTtkfc~yG 80 (219) T d2ilxa1 18 SSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLDLVSYFGKRPPGVLHCTTKFCDYG 80 (219) T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHTTHHHHCCCSSSCSCCCHHHHSCCSCTTCCEEEEEECTTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCC T ss_conf 799999889999999775798999888860564554436888862228999746655503566 No 9 >d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Probab=8.39 E-value=54 Score=11.80 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=0.0 Q ss_pred CCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCC---CHHHHH----------HHHHHHHHHHHC-CCCEEEEEEE Q ss_conf 89957758999999769867669899999999973045---238999----------999999999861-8828999999 Q gi|254780344|r 53 PVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHH---SFHEDC----------TIYIARRLVTIL-DPKWLRIGAY 118 (154) Q Consensus 53 pvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~---~fhE~~----------v~~I~~dL~~~~-~P~~l~V~~~ 118 (154) |.|-||.=.+|.| ..|+..+ +.+.|..=+..++++| .+.+.+ -+.=..||.+++ +|. |.+. T Consensus 6 ~~~~~P~Gd~I~i-iAPS~~~-~~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~dp~---i~aI 80 (167) T d1zl0a2 6 DQTWQPIDGRVAL-IAPASAI-ATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPD---ITAV 80 (167) T ss_dssp CCCCCCCCSEEEE-ECCSBCC-CHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTT---EEEE T ss_pred CCCCCCCCCEEEE-EECCCCC-CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC---CCEE T ss_conf 8888999799999-9579868-999999999999978988987865023467656999999999987531767---8889 Q ss_pred EECCCC Q ss_conf 851798 Q gi|254780344|r 119 WYPRGG 124 (154) Q Consensus 119 f~~RGG 124 (154) |..||| T Consensus 81 ~~~rGG 86 (167) T d1zl0a2 81 WCLRGG 86 (167) T ss_dssp EESCCS T ss_pred EECCCH T ss_conf 988667 No 10 >d1t6la1 d.131.1.2 (A:10-135) UL44 {Human cytomegalovirus, HHV-5 [TaxId: 10359]} Probab=7.54 E-value=59 Score=11.57 Aligned_cols=10 Identities=60% Similarity=1.026 Sum_probs=0.0 Q ss_pred EEEEECCCCCC Q ss_conf 16852689957 Q gi|254780344|r 47 EFTSLCPVTSQ 57 (154) Q Consensus 47 EftslCpvtgq 57 (154) ||++-| |.|| T Consensus 115 efSs~C-VhgQ 124 (126) T d1t6la1 115 EFSSAC-VHGQ 124 (126) T ss_dssp EEEEEB-CCCC T ss_pred HHCCCC-CCCC T ss_conf 224544-2578 Done!