Query         gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 154
No_of_seqs    132 out of 756
Neff          4.8 
Searched_HMMs 13730
Date          Wed Jun  1 05:36:25 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780344.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1wpla_ d.96.1.1 (A:) GTP cycl  97.1  0.0029 2.1E-07   37.5   9.7   80   40-119    73-152 (194)
  2 d1a8ra_ d.96.1.1 (A:) GTP cycl  97.1  0.0023 1.7E-07   38.1   9.0   78   41-118    99-176 (221)
  3 d1wura1 d.96.1.1 (A:32-216) GT  97.1  0.0029 2.1E-07   37.5   9.5   77   42-118    67-143 (185)
  4 d1c4oa1 c.37.1.19 (A:2-409) Nu  20.9     9.7 0.00071   16.3   0.0   37  109-146   179-215 (408)
  5 d2b2na1 c.37.1.19 (A:26-333) T  20.6      12  0.0009   15.7   0.5   18   71-88    191-208 (308)
  6 d1egwa_ d.88.1.1 (A:) Myocyte   17.6     6.8  0.0005   17.2  -1.4   40   44-89     30-71  (71)
  7 d2ccwa1 b.6.1.1 (A:1-129) Azur  11.9      40  0.0029   12.6   3.6   46   12-57     66-117 (129)
  8 d2ilxa1 d.61.1.3 (A:1-219) 2',   8.7      52  0.0038   11.9   1.0   49   75-123    18-80  (219)
  9 d1zl0a2 c.23.16.7 (A:3-169) LD   8.4      54  0.0039   11.8   6.3   67   53-124     6-86  (167)
 10 d1t6la1 d.131.1.2 (A:10-135) U   7.5      59  0.0043   11.6   1.5   10   47-57    115-124 (126)

No 1  
>d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=97.09  E-value=0.0029  Score=37.51  Aligned_cols=80  Identities=16%  Similarity=0.207  Sum_probs=70.4

Q ss_pred             EEEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             99996141685268995775899999976986766989999999997304523899999999999986188289999998
Q gi|254780344|r   40 VVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYW  119 (154)
Q Consensus        40 ~i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~f  119 (154)
                      .+....=.|.|+|.-.=+|=+|.+.|-|.|+++++-...|.....-|--.---+|..+..|.+.|.+.++|.-+.|...=
T Consensus        73 ~Vv~~~I~f~S~CEHHllPf~G~~~IaYiP~~~viGlSKl~Riv~~~arRlQ~QErlt~qIa~~l~~~l~~~gv~V~i~A  152 (194)
T d1wpla_          73 MVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEA  152 (194)
T ss_dssp             EEEEEEEEEEEEETTTCCEEEEEEEEEEECSSEECCHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEEE
T ss_pred             EEEEECCEEEEECCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             69981766874237650256137999998489624566799999999873130779999999999986787866999999


No 2  
>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli [TaxId: 562]}
Probab=97.06  E-value=0.0023  Score=38.14  Aligned_cols=78  Identities=22%  Similarity=0.205  Sum_probs=68.7

Q ss_pred             EEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             999614168526899577589999997698676698999999999730452389999999999998618828999999
Q gi|254780344|r   41 VRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAY  118 (154)
Q Consensus        41 i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~  118 (154)
                      +...-=+|.|+|.-.=+|=+|.+.|-|.|+++++-...|.....-|-..---+|..+..|.+.|.+.++|.-+.|...
T Consensus        99 V~v~~I~f~S~CEHHllPf~G~~hVaYiP~~~viGLSKl~RiV~~~arRlQvQErLT~qIA~al~~~l~p~GVaV~ie  176 (221)
T d1a8ra_          99 VTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSID  176 (221)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEECCSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHTCSCEEEEEE
T ss_pred             EEECCCCEEEECCCCCCCEEEEEEEEEEECCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             997275446652534541122589999735823032579999999983720088999999999999849783899999


No 3  
>d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus thermophilus [TaxId: 274]}
Probab=97.06  E-value=0.0029  Score=37.50  Aligned_cols=77  Identities=19%  Similarity=0.325  Sum_probs=69.2

Q ss_pred             EEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             99614168526899577589999997698676698999999999730452389999999999998618828999999
Q gi|254780344|r   42 RFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAY  118 (154)
Q Consensus        42 ~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~  118 (154)
                      ....=.|.|+|.-.=+|=+|.+.|-|.|+++++-...|.....-|--.---+|..++.|.+.|.+.++|.-+.|...
T Consensus        67 vv~~I~f~S~CEHHllPf~G~~~iaYiP~~~vvGlSKl~Riv~~~arRlQ~QErlt~qIa~~l~~~l~~~gv~V~i~  143 (185)
T d1wura1          67 VVKGVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVE  143 (185)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEEEEEEECSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             EECCCEEEEEEHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             96594588650111763046289999648974475779999999995743378999999999999739782899999


No 4  
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=20.87  E-value=9.7  Score=16.29  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=21.0

Q ss_pred             CCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             88289999998517983135040079999765268888
Q gi|254780344|r  109 DPKWLRIGAYWYPRGGIPIDIFWQTSAPPEGVFLPNQD  146 (154)
Q Consensus       109 ~P~~l~V~~~f~~RGGI~i~~~~~~~~~p~~~~~p~~~  146 (154)
                      .-..+.-.|.|..|||| ||+|--+...|--+...+-.
T Consensus       179 r~~~V~~~GefsvRG~I-lDIfp~~~~~P~RIeffgDe  215 (408)
T d1c4oa1         179 RNDIDLSPGRFRAKGEV-LEIFPAYETEPIRVELFGDE  215 (408)
T ss_dssp             --------------------------------------
T ss_pred             ECCEEECCCEEEEECCC-EEECCCCCCCCEEEEEECCC
T ss_conf             14305336605730671-27600245763789994673


No 5  
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=20.64  E-value=12  Score=15.65  Aligned_cols=18  Identities=17%  Similarity=0.593  Sum_probs=7.3

Q ss_pred             CCCCCHHHHHHHHHHHHH
Q ss_conf             676698999999999730
Q gi|254780344|r   71 DWLIESKSLKLFMASFRN   88 (154)
Q Consensus        71 ~~~vEskSLklYL~Sfrn   88 (154)
                      ..+...++++.+...+++
T Consensus       191 E~~~~~~~i~~~~~~~~~  208 (308)
T d2b2na1         191 EFPTDKAAIELFRSQWRD  208 (308)
T ss_dssp             SSCCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             220158999999999999


No 6  
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.63  E-value=6.8  Score=17.22  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=18.6

Q ss_pred             ECCEEEEECCCCCCCEEEEEEEEECCCCCC--CCHHHHHHHHHHHHHC
Q ss_conf             614168526899577589999997698676--6989999999997304
Q gi|254780344|r   44 TIPEFTSLCPVTSQPDFAHMILDYIPKDWL--IESKSLKLFMASFRNH   89 (154)
Q Consensus        44 ~~~EftslCpvtgqPD~a~i~I~y~~~~~~--vEskSLklYL~Sfrn~   89 (154)
                      .+.|++-||.+    +.|.+.+  .++.+.  .-+.++...|..|.+|
T Consensus        30 Ka~ELs~LC~~----~valiv~--s~~gk~~~f~s~~~~~vl~ry~~~   71 (71)
T d1egwa_          30 KAYELSVLCDC----EIALIIF--NSSNKLFQYASTDMDKVLLKYTEY   71 (71)
T ss_dssp             HHHHHHHHTTC----EEEEEEE--CTTCCEEEEESSCHHHHHHHHHHC
T ss_pred             HHHHHHHCCCC----CEEEEEE--CCCCCEEEEECCCHHHHHHHHHCC
T ss_conf             99999610598----1899998--599988886589999999988319


No 7  
>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}
Probab=11.86  E-value=40  Score=12.57  Aligned_cols=46  Identities=9%  Similarity=0.198  Sum_probs=27.1

Q ss_pred             CCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECC------EEEEECCCCCC
Q ss_conf             37655577788986820013777886479999614------16852689957
Q gi|254780344|r   12 LGGKAKPCDDPNEALLERIPSQNKNLNYVVRFTIP------EFTSLCPVTSQ   57 (154)
Q Consensus        12 LG~~t~~p~~p~~~lLe~i~~~~~~~~~~i~~~~~------EftslCpvtgq   57 (154)
                      +|....++..-++.+|-.-+--.++....+.|+++      ++...|.+-|.
T Consensus        66 ~~~~~~~~~~~~~~via~t~~l~pget~~i~f~~p~~~~~G~Y~f~Ct~PGH  117 (129)
T d2ccwa1          66 AGLAQDYVKAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGH  117 (129)
T ss_dssp             HCGGGTTSCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTG
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCH
T ss_conf             3102456897653100122245888457999994366889609999699990


No 8  
>d2ilxa1 d.61.1.3 (A:1-219) 2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.71  E-value=52  Score=11.88  Aligned_cols=49  Identities=24%  Similarity=0.497  Sum_probs=34.0

Q ss_pred             CHHHHH----HHHHHHHHCCCHHHHHHHHHH-------HHHHHHC---CCCEEEEEEEEECCC
Q ss_conf             989999----999997304523899999999-------9999861---882899999985179
Q gi|254780344|r   75 ESKSLK----LFMASFRNHHSFHEDCTIYIA-------RRLVTIL---DPKWLRIGAYWYPRG  123 (154)
Q Consensus        75 EskSLk----lYL~Sfrn~~~fhE~~v~~I~-------~dL~~~~---~P~~l~V~~~f~~RG  123 (154)
                      ++..|+    -.|...-|+.+||++..+-..       .||.+.+   .|.-+..++.|.-=|
T Consensus        18 ~se~l~~~~~~fl~~L~~l~afk~~l~~~~~~~~~~~~~DL~~yF~~~~p~~lHCTtkfc~yG   80 (219)
T d2ilxa1          18 SSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLDLVSYFGKRPPGVLHCTTKFCDYG   80 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHTTHHHHCCCSSSCSCCCHHHHSCCSCTTCCEEEEEECTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCC
T ss_conf             799999889999999775798999888860564554436888862228999746655503566


No 9  
>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.39  E-value=54  Score=11.80  Aligned_cols=67  Identities=22%  Similarity=0.280  Sum_probs=0.0

Q ss_pred             CCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCC---CHHHHH----------HHHHHHHHHHHC-CCCEEEEEEE
Q ss_conf             89957758999999769867669899999999973045---238999----------999999999861-8828999999
Q gi|254780344|r   53 PVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHH---SFHEDC----------TIYIARRLVTIL-DPKWLRIGAY  118 (154)
Q Consensus        53 pvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~---~fhE~~----------v~~I~~dL~~~~-~P~~l~V~~~  118 (154)
                      |.|-||.=.+|.| ..|+..+ +.+.|..=+..++++|   .+.+.+          -+.=..||.+++ +|.   |.+.
T Consensus         6 ~~~~~P~Gd~I~i-iAPS~~~-~~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~dp~---i~aI   80 (167)
T d1zl0a2           6 DQTWQPIDGRVAL-IAPASAI-ATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPD---ITAV   80 (167)
T ss_dssp             CCCCCCCCSEEEE-ECCSBCC-CHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTT---EEEE
T ss_pred             CCCCCCCCCEEEE-EECCCCC-CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC---CCEE
T ss_conf             8888999799999-9579868-999999999999978988987865023467656999999999987531767---8889


Q ss_pred             EECCCC
Q ss_conf             851798
Q gi|254780344|r  119 WYPRGG  124 (154)
Q Consensus       119 f~~RGG  124 (154)
                      |..|||
T Consensus        81 ~~~rGG   86 (167)
T d1zl0a2          81 WCLRGG   86 (167)
T ss_dssp             EESCCS
T ss_pred             EECCCH
T ss_conf             988667


No 10 
>d1t6la1 d.131.1.2 (A:10-135) UL44 {Human cytomegalovirus, HHV-5 [TaxId: 10359]}
Probab=7.54  E-value=59  Score=11.57  Aligned_cols=10  Identities=60%  Similarity=1.026  Sum_probs=0.0

Q ss_pred             EEEEECCCCCC
Q ss_conf             16852689957
Q gi|254780344|r   47 EFTSLCPVTSQ   57 (154)
Q Consensus        47 EftslCpvtgq   57 (154)
                      ||++-| |.||
T Consensus       115 efSs~C-VhgQ  124 (126)
T d1t6la1         115 EFSSAC-VHGQ  124 (126)
T ss_dssp             EEEEEB-CCCC
T ss_pred             HHCCCC-CCCC
T ss_conf             224544-2578


Done!