RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine
reductase [Candidatus Liberibacter asiaticus str. psy62]
         (154 letters)



>gnl|CDD|31123 COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General
           function prediction only].
          Length = 149

 Score =  164 bits (417), Expect = 9e-42
 Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 4/148 (2%)

Query: 1   MSEITLNGLSILGGKAKPCD--DPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQP 58
               TL G++I G      D  +   A+LE  P+ +   + +V+   PEF SLCP+T QP
Sbjct: 1   QPIETLEGVTIDGQ-DITIDEYEFTNAILEAFPNPHPGRDVLVKLVSPEFKSLCPITGQP 59

Query: 59  DFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAY 118
           DFA + ++YIP    +ESKSLKL++ SFRNH  FHE C   I   L  +L P++L +   
Sbjct: 60  DFATIYIEYIPDKACVESKSLKLYLFSFRNHGIFHEQCANRIFNDLKALLKPEYLEVYGK 119

Query: 119 WYPRGGIPIDIFWQTSAP-PEGVFLPNQ 145
           + PRGGI ID F ++  P P    L  Q
Sbjct: 120 FTPRGGIDIDPFRESGKPGPPYETLREQ 147


>gnl|CDD|144718 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I.  This family
           includes GTP cyclohydrolase enzymes and a family of
           related bacterial proteins.
          Length = 86

 Score = 89.9 bits (224), Expect = 3e-19
 Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 58  PDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGA 117
           P F    + YIP   +I    L  ++ SF       E  T  IA  LV  L PK + +  
Sbjct: 1   PFFGKAHIAYIPNGKVIGLSKLARYVDSFARRLQVQERLTNQIADALVEALKPKGVAVVI 60

Query: 118 Y-----WYPRGGIPIDIFWQTSAPP 137
                    RG         TSA  
Sbjct: 61  EAEHLCMTMRGVRKPGSKTVTSALR 85


>gnl|CDD|29763 cd00642, GTP_cyclohydro1, GTP cyclohydrolase I (GTP-CH-I) catalyzes
           the conversion of GTP into dihydroneopterin
           triphosphate.  The enzyme product is the precursor of
           tetrahydrofolate in eubacteria, fungi, and plants and of
           the folate analogs in methanogenic bacteria.  In
           vertebrates and insects it is the biosynthtic precursor
           of tetrahydrobiopterin (BH4) which is involved in the
           formation of catacholamines, nitric oxide, and the
           stimulation of T lymphocytes. The biosynthetic reaction
           of BH4 is controlled by a regulatory protein GFRP which
           mediates feedback inhibition of GTP-CH-I by BH4.  This
           inhibition is reversed by phenylalanine. The decameric
           GTP-CH-I forms a complex with two pentameric GFRP in the
           presence of phenylalanine or a combination of GTP and
           BH4, respectively..
          Length = 185

 Score = 32.9 bits (75), Expect = 0.037
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 20  DDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSL 79
              N+     I  ++ +   +V+       S+C     P +  + + YIPKD +I    L
Sbjct: 46  QALNDPKNTAIFDEDHDEMVIVKDI--TLFSMCEHHLVPFYGKVHIAYIPKDKVIGLSKL 103

Query: 80  KLFMASFRNHHSFHEDCTIYIARRLVTILDPK 111
              +  F       E  T  IA  +  IL P+
Sbjct: 104 ARIVEFFSRRLQVQERLTKQIAVAIQEILGPQ 135


>gnl|CDD|32220 COG2037, Ftr, Formylmethanofuran:tetrahydromethanopterin
           formyltransferase [Energy production and conversion].
          Length = 297

 Score = 28.7 bits (64), Expect = 0.68
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 91  SFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAPPEGVFLPNQDVPQY 150
           +F E      AR L+T  D KW +I A      G    +    +      +LP ++ P  
Sbjct: 11  TFAEAFDGKYARVLITAADKKWAKIAA--TEATGFGTSVIGCPAEAGIEKYLPPEETPDG 68

Query: 151 R 151
           R
Sbjct: 69  R 69


>gnl|CDD|32728 COG2904, COG2904, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 137

 Score = 28.4 bits (63), Expect = 0.90
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 67  YIPKD--WLIESKSLKLFMASFRN 88
           YIP D   LIESKS KL++ SF  
Sbjct: 78  YIPADSPNLIESKSFKLYLNSFNQ 101


>gnl|CDD|145908 pfam03008, DUF234, Archaea bacterial proteins of unknown function. 
          Length = 97

 Score = 26.8 bits (60), Expect = 2.2
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 73  LIESKSLKLFMASFRNH------HSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIP 126
           LIE  + +  +   +          F E C   +         P++ +IG +W+   G  
Sbjct: 11  LIEEGNYEEVLEKIKEDLNEYLGFVFEELCRELLRELNKLGKLPRFTKIGRWWH--KGEE 68

Query: 127 IDI 129
           IDI
Sbjct: 69  IDI 71


>gnl|CDD|39470 KOG4269, KOG4269, KOG4269, Rac GTPase-activating protein BCR/ABR
           [Signal transduction mechanisms].
          Length = 1112

 Score = 26.6 bits (58), Expect = 3.0
 Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 7/42 (16%)

Query: 32  SQNKNLNYVVRFTIPEF-------TSLCPVTSQPDFAHMILD 66
              KN  Y  ++ IP          +     S  D     LD
Sbjct: 590 KDGKNQQYDCKWYIPLKDLQVNRYNANEASPSIIDPPDEELD 631


>gnl|CDD|145206 pfam01913, FTR, lobe.  This enzyme EC:2.3.1.101 is involved in
           archaebacteria in the formation of methane from carbon
           dioxide. N-terminal distal lobe of alpha+beta
           ferredoxin-like fold. SCOP reports fold duplication with
           C-terminal proximal lobe.
          Length = 144

 Score = 26.4 bits (59), Expect = 3.2
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 91  SFHEDCTIYIARRLVTILDPKWLRIGAY 118
           +F E   + + R L+T    +W R  A 
Sbjct: 11  TFAEAFPMKVTRVLITAATERWAREAAT 38


>gnl|CDD|30416 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport
           and metabolism].
          Length = 371

 Score = 26.0 bits (57), Expect = 4.3
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 68  IPKDWLIESKSLKLFMASFRNHHSFHE------DCTIYIARRLVTILDPKWLRIGAYWYP 121
            P+ W++ +       A + +H +  E      D           ILD   LR   YW  
Sbjct: 299 GPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPADIVFTDGSEEGAILDRNGLRPARYWIT 358

Query: 122 RGGIPI 127
           + G  +
Sbjct: 359 KDGEVV 364


>gnl|CDD|99731 cd06410, PB1_UP2, Uncharacterized protein 2. The PB1 domain is a
          modular domain mediating specific protein-protein
          interaction which play a role in many critical cell
          processes such as osteoclastogenesis, angiogenesis,
          early cardiovascular development, and cell polarity. A
          canonical PB1-PB1 interaction, which involves
          heterodimerization of two PB1 domains, is required for
          the formation of macromolecular signaling complexes
          ensuring specificity and fidelity during cellular
          signaling. The interaction between two PB1 domain
          depends on the type of PB1. There are three types of
          PB1 domains: type I which contains an OPCA motif,
          acidic aminoacid cluster, type II which contains a
          basic cluster, and type I/II which contains both an
          OPCA motif and a basic cluster.  Interactions of PB1
          domains with other protein domains have been described
          as noncanonical PB1-interactions..
          Length = 97

 Score = 26.0 bits (58), Expect = 4.4
 Identities = 6/36 (16%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 34 NKNLNYVVRFTIP--EFTSLCPVTSQPDFAHMILDY 67
             +   +++ +P  +  +L  V++  D  +M+ +Y
Sbjct: 47 GAGVVVTLKYQLPDEDLDALISVSNDEDLKNMMEEY 82


>gnl|CDD|37065 KOG1854, KOG1854, KOG1854, Mitochondrial inner membrane protein
           (mitofilin) [Cell wall/membrane/envelope biogenesis].
          Length = 657

 Score = 25.8 bits (56), Expect = 4.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 50  SLCPVTSQPDFAHMILDYIPK 70
           +L  VT   +     LD IPK
Sbjct: 502 ALKEVTKDDELVAAALDSIPK 522


>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
           closely related to the oligosaccharide phosphorylase
           domain family and other unidentified sequences.
           Oligosaccharide phosphorylase catalyzes the breakdown of
           oligosaccharides into glucose-1-phosphate units. They
           are important allosteric enzymes in carbohydrate
           metabolism. The members of this family are found in
           bacteria and Archaea..
          Length = 778

 Score = 26.0 bits (58), Expect = 4.8
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 47/95 (49%)

Query: 11  ILGGKAKPCDDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPK 70
           I  GKA P D+P + L++ I          V F           + +P+F   I+     
Sbjct: 517 IFAGKAHPADEPGKELIQEI----------VEF-----------SRRPEFRGRIV----- 550

Query: 71  DWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLV 105
                                F ED  + +AR LV
Sbjct: 551 ---------------------FLEDYDMALARHLV 564


>gnl|CDD|36550 KOG1336, KOG1336, KOG1336, Monodehydroascorbate/ferredoxin
           reductase [General function prediction only].
          Length = 478

 Score = 25.6 bits (56), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 113 LRIGAYWYPRGGIPIDIFWQTSAPPEGVF 141
           L  G     +GGI +D F+QTS P   V+
Sbjct: 318 LEKGILLDSKGGIKVDEFFQTSVP--NVY 344


>gnl|CDD|31658 COG1469, COG1469, Uncharacterized conserved protein [Function
           unknown].
          Length = 289

 Score = 25.3 bits (55), Expect = 8.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)

Query: 92  FHEDCTIYIARRLVTILDPKWLRI 115
           F ED    IARRLV         +
Sbjct: 240 FVEDVVREIARRLVEDFPDAAFTV 263


>gnl|CDD|30685 COG0337, AroB, 3-dehydroquinate synthetase [Amino acid transport
           and metabolism].
          Length = 360

 Score = 24.8 bits (54), Expect = 9.8
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 18  PCDDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDW 72
           P +   E LLE +    K L   +RF + +      +    D   ++LD + +  
Sbjct: 305 PDELDAEKLLEAMARDKKVLGGKIRFVLLKEIGKAEIAEGVDE-ELLLDALEEVH 358


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.141    0.461 

Gapped
Lambda     K      H
   0.267   0.0764    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,117,967
Number of extensions: 110108
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 19
Length of query: 154
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 68
Effective length of database: 4,405,363
Effective search space: 299564684
Effective search space used: 299564684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)