RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine
reductase [Candidatus Liberibacter asiaticus str. psy62]
         (154 letters)



>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta
           structure, structural genomics, PSI-2; HET: MSE GUN;
           1.53A {Vibrio cholerae o1 biovar eltor str}
          Length = 290

 Score =  125 bits (315), Expect = 4e-30
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%)

Query: 21  DPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLK 80
           + ++ALL+   +Q + ++ V+        S C +T+QPD+  + + Y      +  ++L 
Sbjct: 169 EFDDALLQG-AAQGEEVSEVLHS--HLLKSNCLITNQPDWGSVEIAYHGAK--MNREALL 223

Query: 81  LFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTS--APPE 138
            ++ SFR H+ FHE C   I   ++    P+ L + A +  RGG+ I+ F  +   AP  
Sbjct: 224 RYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNH 283

Query: 139 GVFLPNQ 145
              +  Q
Sbjct: 284 NQRMARQ 290



 Score = 26.4 bits (58), Expect = 2.6
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 21/115 (18%)

Query: 12  LGGKAKPCDDPNEALLERIPSQNKNLNYVVRFTIP----------EFTSL----CPVTSQ 57
           LG K +  +  + +LL+ +P      +  +  T+P          E + L     P  + 
Sbjct: 24  LGKKTEYANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVA- 82

Query: 58  PDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKW 112
                + +     + LIESKS KL++ S+ N   F       +  RLV  L    
Sbjct: 83  --IGEVSIPATSAN-LIESKSFKLYLNSY-NQTRF--ASWDEVQTRLVHDLSACA 131


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 16/84 (19%)

Query: 4   ITLNGLSILGGKAKPCDDPNEALLERIPSQNKNLNYVVRF---TIPEFTS--LCPVTSQP 58
            +L GL++   KAK     +++   RIP   + L +  RF     P F S  L P +   
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQS---RIPFSERKLKFSNRFLPVASP-FHSHLLVPASDL- 438

Query: 59  DFAHMIL-DYIPKDWLIESKSLKL 81
                I  D +  +    +K +++
Sbjct: 439 -----INKDLVKNNVSFNAKDIQI 457


>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex,
           transferase/RNA complex; 3.10A {Escherichia coli} PDB:
           2det_A 2deu_A*
          Length = 380

 Score = 30.8 bits (69), Expect = 0.12
 Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 5/137 (3%)

Query: 20  DDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSL 79
           D   ++ L R    NK+ +Y +     E  +             +        L+ +K  
Sbjct: 146 DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKK 205

Query: 80  KLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIG----AYWYPRG-GIPIDIFWQTS 134
                 F     F E    Y+  +   I+      IG      ++  G    + I     
Sbjct: 206 DSTGICFIGERKFREFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKE 265

Query: 135 APPEGVFLPNQDVPQYR 151
              E  ++ ++DV    
Sbjct: 266 GTEEPWYVVDKDVENNI 282


>1sr4_C CDT C, cytolethal distending toxin protein C; bacterial, virulence,
           DNA damage, genotoxin, cytotoxins, cell cycle,
           apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP:
           b.42.2.1
          Length = 166

 Score = 29.9 bits (67), Expect = 0.25
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 9   LSILGGKAKPCDDPNEALLERIPSQN 34
            + LG     C D +  +   IP+  
Sbjct: 77  FAFLGKGTTDCKDTDHTVFNLIPTNT 102


>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
           sickness, flavoPro redox-active center; HET: FAD WPF;
           1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
           2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
           1bzl_A* 1aog_A*
          Length = 495

 Score = 28.8 bits (64), Expect = 0.50
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 86  FRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAPP 137
           F +  +   D  +    R+    D +   +G    P+GG+ +D F +T+ P 
Sbjct: 273 FESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPN 324


>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
           genomics, NPPSFA; HET: FAD; 2.10A {Thermus thermophilus
           HB8}
          Length = 335

 Score = 27.0 bits (58), Expect = 1.9
 Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 2/78 (2%)

Query: 64  ILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRG 123
           +L       +   + ++  +                +      I     L        + 
Sbjct: 208 VLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKN 267

Query: 124 GIPIDIFWQTSAPPEGVF 141
            I +D    TS P  GV+
Sbjct: 268 KIKVDTTMATSIP--GVY 283


>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus
           actinomycetemcomitans, oligomerization, stability and
           toxic activity; 2.40A {Aggregatibacter
           actinomycetemcomitans} SCOP: b.42.2.1
          Length = 186

 Score = 26.9 bits (59), Expect = 1.9
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 9   LSILGGKAKPCDDPNEALLERIPSQN 34
            +  G     C D +  +   IP+  
Sbjct: 97  FAFPGEGTTDCKDIDHTVFNLIPTNT 122


>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix,
           anti-parrallel beta sheet, double straded anti-parallel
           beta helix, metal binding protein; 2.00A {Mus musculus}
          Length = 404

 Score = 26.4 bits (58), Expect = 2.9
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 12/54 (22%)

Query: 28  ERIPSQNKNLNY------------VVRFTIPEFTSLCPVTSQPDFAHMILDYIP 69
           +R P Q + L               +R  + +F + CP  + P   +M L  IP
Sbjct: 187 DRTPQQAEMLGLQAEAPEEKAEEEDLRNEVLQFNTNCPECNAPAQTNMKLVQIP 240


>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
           disulphide oxidoreductase; HET: FAD; 1.90A {Escherichia
           coli} SCOP: c.3.1.5 c.3.1.5
          Length = 310

 Score = 26.0 bits (56), Expect = 3.3
 Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)

Query: 109 DPKWLRIGAYWYPRGGIPIDIFWQTSAPPEGVF 141
           +  WL         G I ID   +T+    GVF
Sbjct: 243 NTNWLEGAVERNRMGEIIIDAKCETNVK--GVF 273


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.7 bits (55), Expect = 4.1
 Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 20/45 (44%)

Query: 75  ESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILD--PKWLRIGA 117
           E ++LK   AS +     + D             D  P  L I A
Sbjct: 18  EKQALKKLQASLK----LYAD-------------DSAPA-LAIKA 44


>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
           oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
           PDB: 2rab_A*
          Length = 463

 Score = 25.5 bits (55), Expect = 4.8
 Identities = 15/124 (12%), Positives = 28/124 (22%), Gaps = 10/124 (8%)

Query: 35  KNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHE 94
           ++    V     E   L               +          ++       +      +
Sbjct: 186 RSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQ 245

Query: 95  DCTIYIARRLVTI---LDPKWLRIGAYW-----YPRGGIPIDIFWQTSAPPEGVFLPNQD 146
           D T       V       P    +G           G +P D +  T+ P  GV+     
Sbjct: 246 DGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVP--GVYALGDI 303

Query: 147 VPQY 150
             + 
Sbjct: 304 TGRD 307


>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
           {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
           PDB: 1lpf_A*
          Length = 476

 Score = 25.1 bits (54), Expect = 7.3
 Identities = 15/75 (20%), Positives = 24/75 (32%)

Query: 62  HMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYP 121
            ++L        +++K + +         S   D  I    R     D      G     
Sbjct: 237 KILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDE 296

Query: 122 RGGIPIDIFWQTSAP 136
           RG I +D +  TS P
Sbjct: 297 RGFIYVDDYCATSVP 311


>1m5h_A Formylmethanofuran--tetrahydromethanopterin formyltransferase;
           alpha/beta sandwich; 2.00A {Archaeoglobus fulgidus}
           SCOP: d.58.33.1 d.58.33.1
          Length = 297

 Score = 25.0 bits (55), Expect = 7.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 91  SFHEDCTIYIARRLVTILDPKWLRIGAY 118
           +F E   I IAR L+T  D  W  + A 
Sbjct: 11  TFAEAFDIKIARVLITGYDYYWAWVAAN 38


>1aog_A Trypanothione reductase; FAD dependent disulphide oxidoreductase;
           HET: FAD; 2.30A {Trypanosoma cruzi} SCOP: c.3.1.5
           c.3.1.5 d.87.1.1 PDB: 1gxf_A* 1bzl_A* 1nda_A*
          Length = 485

 Score = 24.9 bits (53), Expect = 8.3
 Identities = 4/16 (25%), Positives = 9/16 (56%)

Query: 121 PRGGIPIDIFWQTSAP 136
             GG+ +D + +T+  
Sbjct: 303 KNGGVQVDEYSRTNVS 318


>1ftr_A FTR, formylmethanofuran\:tetrahydromethanopterin formyltransferase;
           methanogenesis, archae, acyltransferase,
           hyperthermophilic, halophilic; 1.70A {Methanopyrus
           kandleri} SCOP: d.58.33.1 d.58.33.1 PDB: 2fhj_A* 2fhk_A*
          Length = 296

 Score = 25.0 bits (55), Expect = 8.3
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 91  SFHEDCTIYIARRLVTILDPKWLRIGAY 118
           +F E     +AR L+T    KW  I   
Sbjct: 11  TFAEAFEAKMARVLITAASHKWAMIAVK 38


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 24.8 bits (53), Expect = 8.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 7    NGLSILGGKAK--PCDDPNEALLER 29
            N L  L  +A+  P +D NE LLER
Sbjct: 1266 NELEALKLEAEEIPSEDQNEFLLER 1290


>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress
          response, sigma factor, periplasm, membrane,
          transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A
          2v43_A 2v42_A
          Length = 295

 Score = 24.7 bits (53), Expect = 9.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 24 EALLERIPSQNKNLNYVVRFT 44
           ALL+++   +++LNY + F 
Sbjct: 5  GALLQQMNLASQSLNYELSFI 25


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.141    0.461 

Gapped
Lambda     K      H
   0.267   0.0514    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,489,814
Number of extensions: 67642
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 21
Length of query: 154
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 70
Effective length of database: 3,656,734
Effective search space: 255971380
Effective search space used: 255971380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)