BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine
reductase [Candidatus Liberibacter asiaticus str. psy62]
         (154 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 154

 Score =  322 bits (826), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MSEITLNGLSILGGKAKPCDDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDF 60
           MSEITLNGLSILGGKAKPCDDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDF
Sbjct: 1   MSEITLNGLSILGGKAKPCDDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDF 60

Query: 61  AHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWY 120
           AHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWY
Sbjct: 61  AHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWY 120

Query: 121 PRGGIPIDIFWQTSAPPEGVFLPNQDVPQYRGRG 154
           PRGGIPIDIFWQTSAPPEGVFLPNQDVPQYRGRG
Sbjct: 121 PRGGIPIDIFWQTSAPPEGVFLPNQDVPQYRGRG 154


>gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 352

 Score = 25.8 bits (55), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 30  IPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSL 79
           I S     N  +R    +FTS+  ++  PD    ++D I +  LI  KS+
Sbjct: 116 IKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSI 165


>gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator complex subunit SufB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 489

 Score = 23.5 bits (49), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 82  FMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAP 136
           F+++ +N   +  +  +   RR +T+ DP W RI    YP   I  D  +  +AP
Sbjct: 43  FISAKKNEPDWMLEWRLLAYRRWLTMKDPSWARI---RYP--AIDFDDLYYYAAP 92


>gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 205

 Score = 23.5 bits (49), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 27/68 (39%)

Query: 48  FTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTI 107
           F S C     P +  + L YIPK  +I    L   +  +       E  T+ IA  + + 
Sbjct: 90  FFSYCEHHILPIWGKIHLAYIPKKHVIGLSKLVRILEVYSRRLQIQERLTMQIAHAIESS 149

Query: 108 LDPKWLRI 115
            D K + +
Sbjct: 150 TDSKGVAV 157


>gi|254781014|ref|YP_003065427.1| hypothetical protein CLIBASIA_04580 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 116

 Score = 23.1 bits (48), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 5   TLNGLSILGGKAKPCDDPNEALLERIPSQNK 35
           TLNG  I+ G AK   + NE     I S+N+
Sbjct: 77  TLNGAKIVYGFAKSALEKNERESVAIHSKNE 107


>gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 189

 Score = 22.7 bits (47), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 20 DDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQ 57
          D PN A L+ IP Q   +   + F+  +   + P+ S+
Sbjct: 7  DTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASR 44


>gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 395

 Score = 22.3 bits (46), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 48  FTSLCPVTSQPDFAHMILDYIPKDWLIES 76
           F    P   +P    +ILD I K+W + S
Sbjct: 76  FGGGTPSLIEPQNIALILDGIAKNWTVSS 104


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1775

 Score = 22.3 bits (46), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 24   EALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIE 75
            E+L+++   +   L+     T     SL  + S  +FAH I + +  D LI+
Sbjct: 1076 ESLIKKFFGEEIKLSVFDSNTKESNKSLAVINSTLEFAHSIRERVLFDELIQ 1127


>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score = 21.6 bits (44), Expect = 7.7,   Method: Composition-based stats.
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query: 60  FAHMILDYIPKDWLIES 76
           + ++I  Y+P  W+IE+
Sbjct: 127 YQNVISGYVPSPWIIEA 143


>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 753

 Score = 21.2 bits (43), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 63  MILDYIPKDWLIESKSLKLFMASFR 87
           M LD I K+WL   + +    +SFR
Sbjct: 355 MPLDGILKEWLAHRREVLFRRSSFR 379


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.141    0.461 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,491
Number of Sequences: 1233
Number of extensions: 4073
Number of successful extensions: 14
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 10
length of query: 154
length of database: 328,796
effective HSP length: 67
effective length of query: 87
effective length of database: 246,185
effective search space: 21418095
effective search space used: 21418095
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)