HHsearch alignment for GI: 254780345 and conserved domain: PRK00202

>PRK00202 nusB transcription antitermination protein NusB; Reviewed.
Probab=100.00  E-value=3.9e-35  Score=231.43  Aligned_cols=131  Identities=37%  Similarity=0.565  Sum_probs=122.8

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             34699999999999999569998999999998531001322112014434399999999999998999999999741035
Q gi|254780345|r   15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK   94 (170)
Q Consensus        15 ~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~~   94 (170)
T Consensus         2 ~R~~aR~~A~q~Ly~~~~~~~~~~~il~~~~~~-----------~~~~~~d~~~~~~lv~gv~~~~~~iD~~I~~~l-~~   69 (132)
T PRK00202          2 ARRKAREAAVQALYQWELSGNDIAEIEAEFLEE-----------QDGADADVAYFRELVSGVVENQEELDELISPHL-KD   69 (132)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC
T ss_conf             579999999999999985199999999999987-----------456557799999999999996999999999985-59


Q ss_pred             CCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             763323534899999999998643557810339889999998338772314999999999523
Q gi|254780345|r   95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE  157 (170)
Q Consensus        95 w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~  157 (170)
T Consensus        70 w~~~rl~~v~~~ILr~a~yEl~~~~~~p~~v~InE~v~lak~~~~~~~~~fVNgVLd~i~r~l  132 (132)
T PRK00202         70 WTLERLDPVERAILRLAAYELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDKIAKEL  132 (132)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf             996424689999999999999857577547799999999999778972133699999987529