HHsearch alignment for GI: 254780345 and conserved domain: PRK00202
>PRK00202 nusB transcription antitermination protein NusB; Reviewed.
Probab=100.00 E-value=3.9e-35 Score=231.43 Aligned_cols=131 Identities=37% Similarity=0.565 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 34699999999999999569998999999998531001322112014434399999999999998999999999741035
Q gi|254780345|r 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94 (170)
Q Consensus 15 ~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~~ 94 (170)
T Consensus 2 ~R~~aR~~A~q~Ly~~~~~~~~~~~il~~~~~~-----------~~~~~~d~~~~~~lv~gv~~~~~~iD~~I~~~l-~~ 69 (132)
T PRK00202 2 ARRKAREAAVQALYQWELSGNDIAEIEAEFLEE-----------QDGADADVAYFRELVSGVVENQEELDELISPHL-KD 69 (132)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC
T ss_conf 579999999999999985199999999999987-----------456557799999999999996999999999985-59
Q ss_pred CCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 763323534899999999998643557810339889999998338772314999999999523
Q gi|254780345|r 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 (170)
Q Consensus 95 w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~ 157 (170)
T Consensus 70 w~~~rl~~v~~~ILr~a~yEl~~~~~~p~~v~InE~v~lak~~~~~~~~~fVNgVLd~i~r~l 132 (132)
T PRK00202 70 WTLERLDPVERAILRLAAYELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDKIAKEL 132 (132)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 996424689999999999999857577547799999999999778972133699999987529