HHsearch alignment for GI: 254780345 and conserved domain: PRK09634
>PRK09634 nusB transcription antitermination protein NusB; Provisional.
Probab=99.93 E-value=7.3e-25 Score=169.47 Aligned_cols=94 Identities=27% Similarity=0.365 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 34399999999999998999999999741035763323534899999999998643557810339889999998338772
Q gi|254780345|r 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142 (170)
Q Consensus 63 ~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~ 142 (170)
T Consensus 111 ~~VR~~a~~~i~~v~~~~~eID~~i~~~~-~~W~l~Rl~~iDr~ILRlAv~El~~~-d~P~~VaInEAVELAk~ys~~~s 188 (206)
T PRK09634 111 EEVREYALERVGLVIRNRDEIDELLDEVM-VGWQLKRLPRIDRDILRLAVVEILFL-NTPAAVAINEAVELAKRYSDEQG 188 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999975899999999872-69987775788999999999998035-99951139999999998678861
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 3149999999995233
Q gi|254780345|r 143 PKFINAVLDKVSRKEE 158 (170)
Q Consensus 143 ~~fVNaVL~ki~k~~~ 158 (170)
T Consensus 189 ~~FINGVL~r~~~~~~ 204 (206)
T PRK09634 189 RRFINGVLRRLQDALS 204 (206)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 1449989888987651