HHsearch alignment for GI: 254780345 and conserved domain: PRK09634

>PRK09634 nusB transcription antitermination protein NusB; Provisional.
Probab=99.93  E-value=7.3e-25  Score=169.47  Aligned_cols=94  Identities=27%  Similarity=0.365  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             34399999999999998999999999741035763323534899999999998643557810339889999998338772
Q gi|254780345|r   63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE  142 (170)
Q Consensus        63 ~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~  142 (170)
T Consensus       111 ~~VR~~a~~~i~~v~~~~~eID~~i~~~~-~~W~l~Rl~~iDr~ILRlAv~El~~~-d~P~~VaInEAVELAk~ys~~~s  188 (206)
T PRK09634        111 EEVREYALERVGLVIRNRDEIDELLDEVM-VGWQLKRLPRIDRDILRLAVVEILFL-NTPAAVAINEAVELAKRYSDEQG  188 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999999975899999999872-69987775788999999999998035-99951139999999998678861


Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             3149999999995233
Q gi|254780345|r  143 PKFINAVLDKVSRKEE  158 (170)
Q Consensus       143 ~~fVNaVL~ki~k~~~  158 (170)
T Consensus       189 ~~FINGVL~r~~~~~~  204 (206)
T PRK09634        189 RRFINGVLRRLQDALS  204 (206)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             1449989888987651