HHsearch results for GI: 254780345 and protein with PDBid: 3d3b_A
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermination; HET: NHE; 1.30A {Escherichia coli K12} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=100.00 E-value=2.4e-34 Score=225.32 Aligned_cols=138 Identities=28% Similarity=0.363 Sum_probs=125.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98132346999999999999995699989999999985310013221120144343999999999999989999999997
Q gi|254780345|r 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 (170)
Q Consensus 10 ~~~~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~ 89 (170)
|++ ..|+.||+.|+|+||++++++.+.++++.+|... ......|..|+++++.|+.++...+|.+|.+
T Consensus 3 m~~-~~R~~aR~~a~q~Ly~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~~~~~~lv~gv~~~~~~ld~~I~~ 70 (141)
T 3d3b_A 3 MEP-AARRRARECAVQALYSWQLSQNDIADVEYQFLAE-----------QDVKDVDVLYFRELLAGVATNTAYLDGLMKP 70 (141)
T ss_dssp CCC-HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------SCCTTSCHHHHHHHHHHHHHTHHHHHHHHGG
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998-4799999999999999984699999999999884-----------4444357999999999899739999999999
Q ss_pred HHCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 410357633235348999999999986435578103398899999983387723149999999995233320
Q gi|254780345|r 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 (170)
Q Consensus 90 ~l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~ 161 (170)
++ +|+++|+++++++|||+|+||+++.+++|++|+|||||+|||.|++++++||||||||+++|+.+.++
T Consensus 71 ~l--~~~~~rl~~~~~~ILrla~~El~~~~~~p~~vvInE~VelAK~~~~~~~~~fVNaVL~~i~k~~r~~e 140 (141)
T 3d3b_A 71 YL--SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 140 (141)
T ss_dssp GG--TTCSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHCTTC
T ss_pred HH--HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 76--75598637989999999999998665899702199999999996899720338999999999847357