HHSEARCH alignment of GI: 254780345 and SCOP domain: d1ey1a_

Alignment

Probab=100.00  E-value=1.3e-33  Score=219.45  Aligned_cols=135  Identities=28%  Similarity=0.366  Sum_probs=123.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             23469999999999999956999899999999853100132211201443439999999999999899999999974103
Q gi|254780345|r   14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE   93 (170)
Q Consensus        14 ~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~   93 (170)
                      .+|+.||+.|+|+||++++++.++++++.+|...           ..+...|+.|+++++.|+.++...+|.+|.+++  
T Consensus         4 ~~R~~aR~~a~q~Ly~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~~~~~~l~~gv~~~~~~id~~I~~~l--   70 (139)
T d1ey1a_           4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE-----------QDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL--   70 (139)
T ss_dssp             TCCCSHHHHHHHHHHHHHHHCCCSHHHHHHHHHT-----------TTSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf             4789999999999999983699999999999883-----------454314589999999999983788999999988--


Q ss_pred             CCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             57633235348999999999986435578103398899999983387723149999999995233320
Q gi|254780345|r   94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR  161 (170)
Q Consensus        94 ~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~  161 (170)
                      +|+++|+++++++|||+|+||+++.+++|++|+|||||+|||.|++++++||||||||+++|+.+.++
T Consensus        71 ~~~~~r~~~~~~~ILr~a~~El~~~~~~p~~viInE~Velak~~~~~~~~~fVNgVL~~i~k~~r~~e  138 (139)
T d1ey1a_          71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK  138 (139)
T ss_dssp             CSCTTTSCHHHHHHHHHHHHHHHSCSSCCSHHHHHHHHHHTTTTTCSSSSHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             86487537678999999999999713777612599999999996898743117999999999847357

SCOP domain information

class: All alpha proteins
fold: NusB-like
superfamily: NusB-like
family: Antitermination factor NusB
domain: Antitermination factor NusB
species: Escherichia coli [TaxId: 562]